BAC Information

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BAC

Clone NameB6Ng01-006J13
Chromosome5 (Build37)
Map Location 49,444,212 - 49,606,574
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J13.bB6Ng01-006J13.g
ACCDH843410DH843411
length5241,046
definitionDH843410|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J13, 5' end.DH843411|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,606,045 - 49,606,574)(49,444,212 - 49,445,264)
sequence
ccaaaatacatctttttttttttttttttttttttggtttttcgagatag
ggtttccctgtatagccctggctgtcctagaactcactctgtagaccagg
ctggcctcaaactcaggaaatactttttaacatgcactgacatgcttccc
ctcaggcccagattaccgggataaatgttttgcacctcccctccctatta
catgttgaacattctgcactttgcatcatcccgtttaatgagaacacttg
tttgcatgttactgcccagataaaagcacagtgactcagacagttaaaac
tacaaattcaaggtgacactaatatatatactcagcatctgatcccaaag
ttgcaatctgccttacatgtttcattataatcaatgatttgaaaaagtaa
tcatgctgatcaatgatttttaaaaacttttcgagaggcccattggactt
gcaaactttatatgccccagtacaggggaacaccagggccaaaaaggggg
agtgggtgggcaggggagtggggg
gaattctgtttaatgatggaaattcaatgtggtagccacaggcagcgagg
agacttttctcagatgtgtaatagcagcaagtggttcttcctaacctgaa
gctagttttcatcctgtactcattgtcatttctgactaatgagaagcaag
ttcgtgttcccatctggcctcctgttgctaagaatagcagtagcataagg
tgaaatgtcaatggaaagagacagtggttcatgccatttgtaaaatctaa
tcacagaaccctacatccacaggagcctaatatccccccaaaatattctc
aagcgtgattatcccattccataaaatagttcaaagagattaaagatagg
aaagtatttttaagtcataaatccaataaataattgtcaccataaattaa
cctctgccttctagattatatttataggatagaagtaaacatgaaagtct
actttgtaagttactggtgtgaagagtcaaaagcatgtgcatcgtgctat
tcagaaggcggcgactatgcctggaacaaagacaactgaatgatgctttg
atgaccacagtgacaaatgaaattggtaatgaagtcacatcacacagcca
gaagcatcactgaacatatcggtgatgtggtaacagtaatcaaaaccaca
aaaaaaggtcaaatctcaaagatttgacacaaaacttaaaaggaaagctt
tgtgaaaatgtatttgttgataacaatgtacctgtgtgtgtgtagatcaa
gtaagggcaggacgaagagggaacaagcaaagcacaattcttatgacatc
tgagtgttggagatgataggacttactcctagaagcactagaaaaatact
ttgatcagaaactgataattaaagtaatagtttttatatttttgacagcc
acattttagaaaagtaagcaacttgtattacaaatgaaaccacgttctta
cttcacttactttttgggagcagctggcaaggagatcagtctcctaacta
cttgacttaacatgggcgtttacattctgaggtttctcaagagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49606045_49606574
seq2: B6Ng01-006J13.b_44_573 (reverse)

seq1  CCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCC  50

seq1  TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCGAAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCGAAAAGTT  100

seq1  TTTAAAAATCATTGATCAGCATGATTACTTTTTCAAATCATTGATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCATTGATCAGCATGATTACTTTTTCAAATCATTGATTATAA  150

seq1  TGAAACATGTAAGGCAGATTGCAACTTTGGGATCAGATGCTGAGTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATGTAAGGCAGATTGCAACTTTGGGATCAGATGCTGAGTATATA  200

seq1  TATTAGTGTCACCTTGAATTTGTAGTTTTAACTGTCTGAGTCACTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGTCACCTTGAATTTGTAGTTTTAACTGTCTGAGTCACTGTGCT  250

seq1  TTTATCTGGGCAGTAACATGCAAACAAGTGTTCTCATTAAACGGGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGGGCAGTAACATGCAAACAAGTGTTCTCATTAAACGGGATGAT  300

seq1  GCAAAGTGCAGAATGTTCAACATGTAATAGGGAGGGGAGGTGCAAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGCAGAATGTTCAACATGTAATAGGGAGGGGAGGTGCAAAACAT  350

seq1  TTATCCCGGTAATCTGGGCCTGAGGGGAAGCATGTCAGTGCATGTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCGGTAATCTGGGCCTGAGGGGAAGCATGTCAGTGCATGTTAAAA  400

seq1  AGTATTTCCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGA  450

seq1  CAGCCAGGGCTATACAGGGAAACCCTATCTCGAAAAACCAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTATACAGGGAAACCCTATCTCGAAAAACCAAAAAAAAAAA  500

seq1  AAAAAAAAAAAAGATGTATTTTGGGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGATGTATTTTGGGAATTC  530

seq1: chr5_49444212_49445264
seq2: B6Ng01-006J13.g_67_1112

seq1  GAATTCTGTTTAATGATGGAAATTCAATGTGGTAGCCACAGGCAGCGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAATGATGGAAATTCAATGTGGTAGCCACAGGCAGCGAGG  50

seq1  AGACTTTTCTCAGATGTGTAATAGCAGCAAGTGGTTCTTCCTAACCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCTCAGATGTGTAATAGCAGCAAGTGGTTCTTCCTAACCTGAA  100

seq1  GCTAGTTTTCATCCTGTACTCATTGTCATTTCTGACTAATGAGAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTTCATCCTGTACTCATTGTCATTTCTGACTAATGAGAAGCAAG  150

seq1  TTCGTGTTCCCATCTGGCCTCCTGTTGCTAAGAATAGCAGTAGCATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGTTCCCATCTGGCCTCCTGTTGCTAAGAATAGCAGTAGCATAAGG  200

seq1  TGAAATGTCAATGGAAAGAGACAGTGGTTCATGCCATTTGTAAAATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTCAATGGAAAGAGACAGTGGTTCATGCCATTTGTAAAATCTAA  250

seq1  TCACAGAACCCTACATCCACAGGAGCCTAATATCCCCCCAAAATATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACCCTACATCCACAGGAGCCTAATATCCCCCCAAAATATTCTC  300

seq1  AAGCGTGATTATCCCATTCCATAAAATAGTTCAAAGAGATTAAAGATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGATTATCCCATTCCATAAAATAGTTCAAAGAGATTAAAGATAGG  350

seq1  AAAGTATTTTTAAGTCATAAATCCAATAAATAATTGTCACCATAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTTTAAGTCATAAATCCAATAAATAATTGTCACCATAAATTAA  400

seq1  CCTCTGCCTTCTAGATTATATTTATAGGATAGAAGTAAACATGAAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTCTAGATTATATTTATAGGATAGAAGTAAACATGAAAGTCT  450

seq1  ACTTTGTAAGTTACTGGTGTGAAGAGTCAAAAGCATGTGCATCGTGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAAGTTACTGGTGTGAAGAGTCAAAAGCATGTGCATCGTGCTAT  500

seq1  TCAGAAGGCGGCGACTATGCCTGGAACAAAGACAACTGAATGATGCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGCGGCGACTATGCCTGGAACAAAGACAACTGAATGATGCTTTG  550

seq1  ATGACCACAGTGACAAATGAAATTGGTAATGAAGTCACATCACACAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACAGTGACAAATGAAATTGGTAATGAAGTCACATCACACAGCCA  600

seq1  GAAGCATCACTGAACATATCGGTGATGTGGTAACAGTAATCAAAACCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCACTGAACATATCGGTGATGTGGTAACAGTAATCAAAACCACA  650

seq1  AAAAAAGGTCAAATCTCAAAGATTTGACACAAAACTTAAAAGGAAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTCAAATCTCAAAGATTTGACACAAAACTTAAAAGGAAAGCTT  700

seq1  TGTGAAAATGTATTTGTTGATAACAATGTACCTGTGTGTGTGTAGATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATGTATTTGTTGATAACAATGTACCTGTGTGTGTGTAGATCAA  750

seq1  GTAAGGGCAGGACGAAGAGGGAACAAGCAAAGCACAATTCTTATGACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCAGGACGAAGAGGGAACAAGCAAAGCACAATTCTTATGACATC  800

seq1  TGAGTGTTGGAGATGATAGGACTTACTCCTAGAAGCACTAG-AAAATACT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGTGTTGGAGATGATAGGACTTACTCCTAGAAGCACTAGAAAAATACT  850

seq1  TTGATCAGAAACTGATAATTAAAGTAATAGTTTTTATA-TTTTGACAGCC  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGATCAGAAACTGATAATTAAAGTAATAGTTTTTATATTTTTGACAGCC  900

seq1  ACATTTTAGAAAAGTAAGCAAACTTGTATTACAAATGAAACAAGGTTC-T  947
      ||||||||||||||||||| ||||||||||||||||||||| | |||| |
seq2  ACATTTTAGAAAAGTAAGC-AACTTGTATTACAAATGAAACCACGTTCTT  949

seq1  ACTTCACTTAACTTTTTGGGAAGCAGCTGGCAAGGAGAATCAGTCTCCCT  997
      ||||||||| |||||||||| |||||||||||||||| |||||||| |||
seq2  ACTTCACTT-ACTTTTTGGG-AGCAGCTGGCAAGGAG-ATCAGTCT-CCT  995

seq1  AACTACTTGACTTAAACCATGGGGCGTTTACATCCTGAGGGTATCTCAAA  1047
      |||||||||||||||  ||| |||||||||||| |||| ||| |||| ||
seq2  AACTACTTGACTTAA--CAT-GGGCGTTTACATTCTGA-GGTTTCTC-AA  1040

seq1  GAGCTA  1053
      ||||||
seq2  GAGCTA  1046