BAC Information

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BAC

Clone NameB6Ng01-006K01
Chromosome5 (Build37)
Map Location 47,318,637 - 47,485,692
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K01.bB6Ng01-006K01.g
ACCDH843434DH843435
length1,0131,103
definitionDH843434|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K01, 5' end.DH843435|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,484,673 - 47,485,692)(47,318,637 - 47,319,748)
sequence
gaattcttttgagaaccattgttctctatgttctctggcctatttggata
caggagacagtagagcttaagaaagaggcagaaagaaatttttagagtta
tgaatagaaacaagaaagatggttttatagaatcaaaaacaatacatacc
tcaagaaagcaaacgttgccagtcaaataagaaaggaaagttgagaacaa
ctgatctagagaacaagattattagagagattatgcactagtaatttatt
ttctaaatgaagcaaaacatacttaactctctgcttgatagtaacttaag
agtattggatattcattatggaaaaaaaattaagggtcaatggattagcc
ctattcataaaaacaggaattttttgtcactatggaagtagttggaatag
taacatttagtgatcagaaactggtgtttggggatgaagcttcggtgttc
attttcaagctcttataaaattctgctttaaattatacagacaataataa
agaaggaaaatatcaaaatagttcacaaatgaagtgaaataaacagagga
agcctagggttggttataggtgaatctaatgaatttgagtgaggaaggaa
atgatgacaggtacagtcccaaaagtcaggtagagttgccaagatgacct
tggaaagatcaacaattatcatcaggtcatctgagagaggaaagaatatt
ctcttccagagcctatagaaagaaaatatagggaagttagagaaaatgct
cccaaggaaagagacagaattgtgatttttgctccatagcaaacataata
aatgtttaaagataattgagataattcagaaataaagtcatatcaaaaaa
aaaaatcaagccagaagcacaaagaaaagaacagaccaagacatatacac
ggaataaggtcaattatacagattttacacaaccaaatcaacaatgtgat
ttctggactacataagaggcattttagtagatcatcataagcgcctaaga
tgtctgaggatga
gaattctcagaaatgtgtttcctagtgcttaatgtcttagtctagaataa
ctcctctctgtaacctcatctgaaaatcttgaaggtctcaaagtaattca
aaaagcttaactgtcccctaaatcaaaataaaatactatttttcaaggaa
atgagaaatatcgtggggagaacaatcaagatattataattccagcaccc
aataagaatcgccaggcatgtaaagagatgaggtaaagaaatctatagca
aagaactgaaataaatgatgggatgagagggcatgtacattgtgatgtct
gctctgtaatgctgccggtgttcaccaggagaaatggaaatatggccatg
gtggagaggaagtatgactatgtactaatgacattccaggagaaattata
ggaagaaagagaaaatattaagagaacaagcacatactggagtggtgaca
agcaagtccatgtactgaaatgacccaattagcctaaagacatatctaca
taaactattcaaaatgtagaagtcaaaggagggatcaagacttgtgagtc
taactagagttatcactatgatacaaacaatatgtgtaataagcaacaga
aatggaactgaggcagaaaaaagaaacatttagaagtgccaatgaacata
gtaaaagaactgtagaaaataaggaatgaatatcatatgttcttattaat
acaatgagtacagtctggtacattaaacagagaagaataaactaagggca
gtgatatctggtcataaaaatatgcaagatagtagaaaatgaaacatcac
cttaaatatgcatacctacatttaaatatttatatattctgatacacttc
tatatctatatgcatgttactataattgctggtggtgtaccaatattttt
tctacctttaagtaatcaaatgataacttaaaattgtgcacataaccgag
aaaacccactgctcggcggagactcccatctagaagtgatgagagggttg
tagagggctaggcatttaactgtgcagcatttgtaatctaaagagaaaat
gagttgctgaattttgcttaaatacatgtgttctgtaaggtaaaattata
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47484673_47485692
seq2: B6Ng01-006K01.b_40_1052 (reverse)

seq1  TCATCCTCAGAACATCTTAGGCGCTTATGATGATCTACTAAAAATGCCTC  50
      |||||||||| |||||||||||||||||||||||||||| ||||||||| 
seq2  TCATCCTCAG-ACATCTTAGGCGCTTATGATGATCTACT-AAAATGCCT-  47

seq1  CTTATGTAGTCCAGAAATCACATTGTTGATTTGGTTGTGTAAAATCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAGTCCAGAAATCACATTGTTGATTTGGTTGTGTAAAATCTGTA  97

seq1  TAATTGACCTTATTCCGTGTATATGTCTTGGTCTTGTTCTTTTCTTTGTG  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATTGACCTTATTCCGTGTATATGTCTTGGTC-TGTTCTTTTCTTTGTG  146

seq1  CCTTCTGGCTTGATTTTTTTTTTTTGATATTGACTTTATTTCTGAATTAT  200
       |||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  -CTTCTGGCTTGA-TTTTTTTTTTTGATA-TGACTTTATTTCTGAATTAT  193

seq1  CTCAATTATCTTTAAACATTTATTATGTTTGCTATGGAGCAAAAATCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTATCTTTAAACATTTATTATGTTTGCTATGGAGCAAAAATCACA  243

seq1  ATTCTGTCTCTTTCCTTGGGAGCATTTTCTCTAACTTCCCTATATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCTCTTTCCTTGGGAGCATTTTCTCTAACTTCCCTATATTTTCT  293

seq1  TTCTATAGGCTCTGGAAGAGAATATTCTTTCCTCTCTCAGATGACCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGGCTCTGGAAGAGAATATTCTTTCCTCTCTCAGATGACCTGAT  343

seq1  GATAATTGTTGATCTTTCCAAGGTCATCTTGGCAACTCTACCTGACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTGTTGATCTTTCCAAGGTCATCTTGGCAACTCTACCTGACTTTT  393

seq1  GGGACTGTACCTGTCATCATTTCCTTCCTCACTCAAATTCATTAGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTACCTGTCATCATTTCCTTCCTCACTCAAATTCATTAGATTCA  443

seq1  CCTATAACCAACCCTAGGCTTCCTCTGTTTATTTCACTTCATTTGTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACCAACCCTAGGCTTCCTCTGTTTATTTCACTTCATTTGTGAAC  493

seq1  TATTTTGATATTTTCCTTCTTTATTATTGTCTGTATAATTTAAAGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATATTTTCCTTCTTTATTATTGTCTGTATAATTTAAAGCAGAA  543

seq1  TTTTATAAGAGCTTGAAAATGAACACCGAAGCTTCATCCCCAAACACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGAGCTTGAAAATGAACACCGAAGCTTCATCCCCAAACACCAG  593

seq1  TTTCTGATCACTAAATGTTACTATTCCAACTACTTCCATAGTGACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATCACTAAATGTTACTATTCCAACTACTTCCATAGTGACAAAAA  643

seq1  ATTCCTGTTTTTATGAATAGGGCTAATCCATTGACCCTTAATTTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTTTTTATGAATAGGGCTAATCCATTGACCCTTAATTTTTTTTC  693

seq1  CATAATGAATATCCAATACTCTTAAGTTACTATCAAGCAGAGAGTTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAATATCCAATACTCTTAAGTTACTATCAAGCAGAGAGTTAAGT  743

seq1  ATGTTTTGCTTCATTTAGAAAATAAATTACTAGTGCATAATCTCTCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCTTCATTTAGAAAATAAATTACTAGTGCATAATCTCTCTAAT  793

seq1  AATCTTGTTCTCTAGATCAGTTGTTCTCAACTTTCCTTTCTTATTTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTCTCTAGATCAGTTGTTCTCAACTTTCCTTTCTTATTTGACT  843

seq1  GGCAACGTTTGCTTTCTTGAGGTATGTATTGTTTTTGATTCTATAAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGTTTGCTTTCTTGAGGTATGTATTGTTTTTGATTCTATAAAACC  893

seq1  ATCTTTCTTGTTTCTATTCATAACTCTAAAAATTTCTTTCTGCCTCTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTGTTTCTATTCATAACTCTAAAAATTTCTTTCTGCCTCTTTC  943

seq1  TTAAGCTCTACTGTCTCCTGTATCCAAATAGGCCAGAGAACATAGAGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTACTGTCTCCTGTATCCAAATAGGCCAGAGAACATAGAGAAC  993

seq1  AATGGTTCTCAAAAGAATTC  1020
      ||||||||||||||||||||
seq2  AATGGTTCTCAAAAGAATTC  1013

seq1: chr5_47318637_47319748
seq2: B6Ng01-006K01.g_65_1167

seq1  GAATTCTCAGAAATGTGTTTCCTAGTGCTTAATGTCTTAGTCTAGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAATGTGTTTCCTAGTGCTTAATGTCTTAGTCTAGAATAA  50

seq1  CTCCTCTCTGTAACCTCATCTGAAAATCTTGAAGGTCTCAAAGTAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCTGTAACCTCATCTGAAAATCTTGAAGGTCTCAAAGTAATTCA  100

seq1  AAAAGCTTAACTGTCCCCTAAATCAAAATAAAATACTATTTTTCAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTAACTGTCCCCTAAATCAAAATAAAATACTATTTTTCAAGGAA  150

seq1  ATGAGAAATATCGTGGGGAGAACAATCAAGATATTATAATTCCAGCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATATCGTGGGGAGAACAATCAAGATATTATAATTCCAGCACCC  200

seq1  AATAAGAATCGCCAGGCATGTAAAGAGATGAGGTAAAGAAATCTATAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATCGCCAGGCATGTAAAGAGATGAGGTAAAGAAATCTATAGCA  250

seq1  AAGAACTGAAATAAATGATGGGATGAGAGGGCATGTACATTGTGATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGAAATAAATGATGGGATGAGAGGGCATGTACATTGTGATGTCT  300

seq1  GCTCTGTAATGCTGCCGGTGTTCACCAGGAGAAATGGAAATATGGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAATGCTGCCGGTGTTCACCAGGAGAAATGGAAATATGGCCATG  350

seq1  GTGGAGAGGAAGTATGACTATGTACTAATGACATTCCAGGAGAAATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGGAAGTATGACTATGTACTAATGACATTCCAGGAGAAATTATA  400

seq1  GGAAGAAAGAGAAAATATTAAGAGAACAAGCACATACTGGAGTGGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAGAAAATATTAAGAGAACAAGCACATACTGGAGTGGTGACA  450

seq1  AGCAAGTCCATGTACTGAAATGACCCAATTAGCCTAAAGACATATCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCCATGTACTGAAATGACCCAATTAGCCTAAAGACATATCTACA  500

seq1  TAAACTATTCAAAATGTAGAAGTCAAAGGAGGGATCAAGACTTGTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTCAAAATGTAGAAGTCAAAGGAGGGATCAAGACTTGTGAGTC  550

seq1  TAACTAGAGTTATCACTATGATACAAACAATATGTGTAATAAGCAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGAGTTATCACTATGATACAAACAATATGTGTAATAAGCAACAGA  600

seq1  AATGGAACTGAGGCAGAAAAAAGAAACATTTAGAAGTGCCAATGAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACTGAGGCAGAAAAAAGAAACATTTAGAAGTGCCAATGAACATA  650

seq1  GTAAAAGAACTGTAGAAAATAAGGAATGAATATCATATGTTCTTATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAACTGTAGAAAATAAGGAATGAATATCATATGTTCTTATTAAT  700

seq1  ACAATGAGTACAGTCTGGTACATTAAACAGAGAAGAATAAACTAAGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGTACAGTCTGGTACATTAAACAGAGAAGAATAAACTAAGGGCA  750

seq1  GTGATATCTGGTCATAAAAATATGCAAGATAGTAGAAAATGAAACATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCTGGTCATAAAAATATGCAAGATAGTAGAAAATGAAACATCAC  800

seq1  CTTAAATATGCATACCTACATTTAAATATTTATATATTCTGATACACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATGCATACCTACATTTAAATATTTATATATTCTGATACACTTC  850

seq1  TATATCTATATGCATGTTACTATAATTGCTGGTGGTGTACCAATA-TTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATATCTATATGCATGTTACTATAATTGCTGGTGGTGTACCAATATTTTT  900

seq1  TCTACCTTTAAGTAATCAAAATGATAACTTAAAATTGTGGCACATAAACC  949
      ||||||||||||||||| |||||||||||||||||||| |||||| ||||
seq2  TCTACCTTTAAGTAATC-AAATGATAACTTAAAATTGT-GCACAT-AACC  947

seq1  GAGAAAACCCACTGCTCGGCGGAGACTCCCATCTAAGAAGTGATGAGAGG  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGAAAACCCACTGCTCGGCGGAGACTCCCATCT-AGAAGTGATGAGAGG  996

seq1  GTTGTTAGAGGGCTAGGCATTTAAACTGTGCAGCAATTTGT-ATCTATAG  1048
      |||| ||||||||||||||||| ||||||||||| |||||| ||||| ||
seq2  GTTG-TAGAGGGCTAGGCATTT-AACTGTGCAGC-ATTTGTAATCTAAAG  1043

seq1  AGAGAAATGAAGGTTGCTGAA-TATGC-TAAATACATGTGTCTGGTAAAA  1096
      ||| ||||||  ||||||||| | ||| |||||||||||||   ||  ||
seq2  AGA-AAATGA--GTTGCTGAATTTTGCTTAAATACATGTGTTCTGT--AA  1088

seq1  GGTAAAATATATAAAA  1112
      |||||||| |||||||
seq2  GGTAAAAT-TATAAAA  1103