BAC Information

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BAC

Clone NameB6Ng01-006K20
Chromosome5 (Build37)
Map Location 13,826,858 - 13,827,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067
Downstream geneLOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K20.bB6Ng01-006K20.g
ACCDH843470DH843471
length1,009221
definitionDH843470|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K20, 5' end.DH843471|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtactttctaggtgggtacttatggggtgtggagctggagg
aaatttgtaggtttccaaaaactactcagtaggtagtcaggatcctcaaa
caaggtaaaagaaaagaaagccatgctggtaaagggagtcctccattttg
tgctgagctcatggtagactgcaaccttaatcagcaggatttccccacaa
tatgtaagtttcagattaaattgcagagcctgttggatttagtgataggc
tgctcttagcttaaactgcaattattaagactgttctactgtcatgagtc
agaactattcaaaccatacaaaaccagtgtgttttgtatacagtagaagc
ccaagcctccatggatacttttgtttccaaaatagaggctataaattcta
ttttccagtggaaaagcacacattgtgcttaaagaatactatagatggta
ctgagcacagacgggaggtgtctttaattagaatcaatgccccaactagg
tcttgatgctcttcatactctttcctacctagttcccctcccttaaacca
cctctgatgactattttgtttcccatgctgaatgagattcaaacatcctc
ccttgggccctgcttattacttagttcctttggttctatggattatagca
tggctatcctgtattttatggctaatgtccatttataaatgagtacatac
cctgcctgtccttctggctctgggttacctcactgaagatattatcttct
agttctgtctatttgcctgcaaaattcataatgtctttgttttttaatgg
ctgaatactgttccatggtataacatttactttatccattctttaattga
cagacatctagttttgtctggttataatgcctaaactaccattgaacaca
gctaagcaagtgtctttgtggggcatcttttgcctatatgtccaagagta
gtatagctaggtctggggtagaacttattttcaaattttctgagaaacta
caataatgg
agctgttctgactcaaacccctctacaggcttactgatcagtctggcttc
tcagttatcctgaatcctccacttgacctcaaactaactctataatctat
tctgatcttctggctccttctcattttctggcctgttatctctctgcatc
ttgtctctgtacaactgtccaggtaaaactatcttctctctccctctcct
ctccctccccctcccctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13826858_13827866
seq2: B6Ng01-006K20.b_46_1054

seq1  GAATTCCAGGTACTTTCTAGGTGGGTACTTATGGGGTGTGGAGCTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTACTTTCTAGGTGGGTACTTATGGGGTGTGGAGCTGGAGG  50

seq1  AAATTTGTAGGTTTCCAAAAACTACTCAGTAGGTAGTCAGGATCCTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTAGGTTTCCAAAAACTACTCAGTAGGTAGTCAGGATCCTCAAA  100

seq1  CAAGGTAAAAGAAAAGAAAGCCATGCTGGTAAAGGGAGTCCTCCATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAAAGAAAAGAAAGCCATGCTGGTAAAGGGAGTCCTCCATTTTG  150

seq1  TGCTGAGCTCATGGTAGACTGCAACCTTAATCAGCAGGATTTCCCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTCATGGTAGACTGCAACCTTAATCAGCAGGATTTCCCCACAA  200

seq1  TATGTAAGTTTCAGATTAAATTGCAGAGCCTGTTGGATTTAGTGATAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGTTTCAGATTAAATTGCAGAGCCTGTTGGATTTAGTGATAGGC  250

seq1  TGCTCTTAGCTTAAACTGCAATTATTAAGACTGTTCTACTGTCATGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAGCTTAAACTGCAATTATTAAGACTGTTCTACTGTCATGAGTC  300

seq1  AGAACTATTCAAACCATACAAAACCAGTGTGTTTTGTATACAGTAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATTCAAACCATACAAAACCAGTGTGTTTTGTATACAGTAGAAGC  350

seq1  CCAAGCCTCCATGGATACTTTTGTTTCCAAAATAGAGGCTATAAATTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTCCATGGATACTTTTGTTTCCAAAATAGAGGCTATAAATTCTA  400

seq1  TTTTCCAGTGGAAAAGCACACATTGTGCTTAAAGAATACTATAGATGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGTGGAAAAGCACACATTGTGCTTAAAGAATACTATAGATGGTA  450

seq1  CTGAGCACAGACGGGAGGTGTCTTTAATTAGAATCAATGCCCCAACTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACAGACGGGAGGTGTCTTTAATTAGAATCAATGCCCCAACTAGG  500

seq1  TCTTGATGCTCTTCATACTCTTTCCTACCTAGTTCCCCTCCCTTAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGCTCTTCATACTCTTTCCTACCTAGTTCCCCTCCCTTAAACCA  550

seq1  CCTCTGATGACTATTTTGTTTCCCATGCTGAATGAGATTCAAACATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATGACTATTTTGTTTCCCATGCTGAATGAGATTCAAACATCCTC  600

seq1  CCTTGGGCCCTGCTTATTACTTAGTTCCTTTGGTTCTATGGATTATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCCCTGCTTATTACTTAGTTCCTTTGGTTCTATGGATTATAGCA  650

seq1  TGGCTATCCTGTATTTTATGGCTAATGTCCATTTATAAATGAGTACATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCCTGTATTTTATGGCTAATGTCCATTTATAAATGAGTACATAC  700

seq1  CCTGCCTGTCCTTCTGGCTCTGGGTTACCTCACTGAAGATATTATCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTCCTTCTGGCTCTGGGTTACCTCACTGAAGATATTATCTTCT  750

seq1  AGTTCTGTCTATTTGCCTGCAAAATTCATAATGTCTTTGTTTTTTAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTCTATTTGCCTGCAAAATTCATAATGTCTTTGTTTTTTAATGG  800

seq1  CTGAATACTGTTCCATGGTATAACATTTACTTTATCCATTCTTTAATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATACTGTTCCATGGTATAACATTTACTTTATCCATTCTTTAATTGA  850

seq1  CAGACATCTAGTTTTGTCTGGTTATAATGCCTAAAACTACCATTGAACAC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGACATCTAGTTTTGTCTGGTTATAATGCCT-AAACTACCATTGAACAC  899

seq1  AGCTAAGCAAGTGTCTTTGTGGGGCATCTTTTGCCTATATGCCCAAGAGT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCTAAGCAAGTGTCTTTGTGGGGCATCTTTTGCCTATATGTCCAAGAGT  949

seq1  AGTATAGCTAGGTCTTGGGGTAGAACT--ATTTCCAATTTTCTGAGAAAC  998
      |||||||||||||| ||||||||||||   |||| |||||||||||||||
seq2  AGTATAGCTAGGTC-TGGGGTAGAACTTATTTTCAAATTTTCTGAGAAAC  998

seq1  TACAATAATGG  1009
      |||||||||||
seq2  TACAATAATGG  1009