BAC Information

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BAC

Clone NameB6Ng01-006K22
Chromosome5 (Build37)
Map Location 128,258,771 - 128,385,340
singlet/doubletdoublet
Overlap geneTmem132d
Upstream geneLOC100040327, Tmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K22.bB6Ng01-006K22.g
ACCDH843474DH843475
length9881,035
definitionDH843474|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K22, 5' end.DH843475|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,258,771 - 128,259,766)(128,384,299 - 128,385,340)
sequence
gaattcacagttctgagctttcccagagggaaacacacatacacacacac
atatttactggctcacacttccagggtgccctagtacagcttcatttgta
aagtgggtgtgaaatgacgaaatgagggtgtagaaaaagctttgggggct
gagactttcctcgaaaccccaggggactgcctgagcctgagccccaaaac
acaagccagtcctggtagtagtttctagaaactttggagcaaaggctgac
gacaacatgggttgaactacaaacttcataacaggacggttcaataccag
tgctggagtgtgaccatgttttaaatagaaatgtgtctccaggtactcag
gtaatctgaggtcacactggactaaataaaaccgaatcctataagtagat
gtctttatagggaactttggtcacctgagagagacctaaagagaagatag
aagcagatagaaggtgatttggggggaggagtataccagggatcaaaccg
agggcctggcacataccgctgagctataccccagcctcaaggcactgttg
taagagcaaaggacaccaaagatcaccagcaaactgccagggaagacctt
cttgcttcaaaattcttagaaggagtgggccccaccaacacttttacccc
agaaggtcctgccctccagagatgagaaacagtgtagtgttcaaagttcc
tggtttgcaaaatcctcatggctggatgcctagaagtgacctgggaggga
aagaacctctggatgtgatgctgaggagatggtaatggcggcctcaggga
tgctcttcccaacatgtaggaagctcttttgctctctgtcaatcatgggt
ggtctaatgagctaacaggtcaagtttgagcaagagggcatagttttcta
tacctggaatgattttgttgttgtttgttgtttttcatccaaactttggg
tggagttgctcaatctagaccttgttatcccaagatac
gaattctatgatgtggtccatttgtcagacacacagacactggcaggatg
gacagtgagccttagcaccaactatgagcttccataataggaatgagtca
caacagactttgggattgggatgggttggtatgtgtatccatgtgtgcgg
gtacacgtgtatgtacactgaattcgtccaaagacaatattagttaataa
tagtgaaggtgttaatagtgacttccaatctgaagcaagctatgtgccac
atctaaaatgggaggctcaggactttactaaggaacaacaccatgtttga
tgagcacagaccactctcaatgggcatttgaattgatggttaagaagcct
cattctgtccttctggatggagtggaggcctcatgtgttcccagaagcag
cagaacaaaagcctgcttcttaacaaccagcatgaaggtctcctatggtt
gtactttgggcacagaaagcagacttggctgatgcagcctcttggttttt
cttctcttctagttccgctcctgcatccaatttctccatccttacctcta
gactgaggaagcctcatgcaacaagtaccctctgactcgtggtacacatg
ggtcactttccttgtcttccatccctgtctctgcctcctcctagctctct
aacacttggcaaaggaacttttcctttacaagagagtgttctgattccaa
gctgaaacctgagtcagcttccccttttgtttatgcaagaaaacaaaacc
aatcaaaattcggacatccaaatggttaattaacatcccaaggtgtgcca
ttaatagaagcaattacttaagagatgcgttccatctgctgtaagataaa
ctcaataaaaaatttaatcaagaacatttgctattttataacggggcttt
tatatccttcgctcatacgaaaggaaggcccattaaagaatctaatttac
ttcacattatactcacttacaagaatgaaatcaaatctggcaggattagt
ttaaaacctggagaatagaatggaaaaacagcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128258771_128259766
seq2: B6Ng01-006K22.b_47_1034

seq1  GAATTCACAGTTCTGAGCTTTCCCAGAGGGAAACACACATACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTCTGAGCTTTCCCAGAGGGAAACACACATACACACACAC  50

seq1  ATATTTACTGGCTCACACTTCCAGGGTGCCCTAGTACAGCTTCATTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTGGCTCACACTTCCAGGGTGCCCTAGTACAGCTTCATTTGTA  100

seq1  AAGTGGGTGTGAAATGACGAAATGAGGGTGTAGAAAAAGCTTTGGGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTGTGAAATGACGAAATGAGGGTGTAGAAAAAGCTTTGGGGGCT  150

seq1  GAGACTTTCCTCGAAACCCCAGGGGACTGCCTGAGCCTGAGCCCCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCCTCGAAACCCCAGGGGACTGCCTGAGCCTGAGCCCCAAAAC  200

seq1  ACAAGCCAGTCCTGGTAGTAGTTTCTAGAAACTTTGGAGCAAAGGCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGTCCTGGTAGTAGTTTCTAGAAACTTTGGAGCAAAGGCTGAC  250

seq1  GACAACATGGGTTGAACTACAAACTTCATAACAGGACGGTTCAATACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATGGGTTGAACTACAAACTTCATAACAGGACGGTTCAATACCAG  300

seq1  TGCTGGAGTGTGACCATGTTTTAAATAGAAATGTGTCTCCAGGTACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGTGTGACCATGTTTTAAATAGAAATGTGTCTCCAGGTACTCAG  350

seq1  GTAATCTGAGGTCACACTGGACTAAATAAAACCGAATCCTATAAGTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTGAGGTCACACTGGACTAAATAAAACCGAATCCTATAAGTAGAT  400

seq1  GTCTTTATAGGGAACTTTGGTCACCTGAGAGAGACCTAAAGAGAAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATAGGGAACTTTGGTCACCTGAGAGAGACCTAAAGAGAAGATAG  450

seq1  AAGCAGATAGAAGGTGATTTGGGGGGAGGAGTATACCAGGGATCAAACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATAGAAGGTGATTTGGGGGGAGGAGTATACCAGGGATCAAACCG  500

seq1  AGGGCCTGGCACATACCGCTGAGCTATACCCCAGCCTCAAGGCACTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTGGCACATACCGCTGAGCTATACCCCAGCCTCAAGGCACTGTTG  550

seq1  TAAGAGCAAAGGACACCAAAGATCACCAGCAAACTGCCAGGGAAGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAAAGGACACCAAAGATCACCAGCAAACTGCCAGGGAAGACCTT  600

seq1  CTTGCTTCAAAATTCTTAGAAGGAGTGGGCCCCACCAACACTTTTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCAAAATTCTTAGAAGGAGTGGGCCCCACCAACACTTTTACCCC  650

seq1  AGAAGGTCCTGCCCTCCAGAGATGAGAAACAGTGTAGTGTTCAAAGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTCCTGCCCTCCAGAGATGAGAAACAGTGTAGTGTTCAAAGTTCC  700

seq1  TGGTTTGCAAAATCCTCATGGCTGGATGCCTAGAAGTGACCTGGGAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCAAAATCCTCATGGCTGGATGCCTAGAAGTGACCTGGGAGGGA  750

seq1  AAGAACCTCTGGATGTGATGCTGAGGAGATGGTAATGGCGGCCTCAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTCTGGATGTGATGCTGAGGAGATGGTAATGGCGGCCTCAGGGA  800

seq1  TGCTCTTCCCAACATGTAGGAAGCTC-TTTGCTCTCTGTCAATCATGGGT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCTCTTCCCAACATGTAGGAAGCTCTTTTGCTCTCTGTCAATCATGGGT  850

seq1  GGTCTAATGAGCATACAGGTCAGGTTTGAGCAAGAGGGCATAGCTTTCTA  899
      ||||||||||||  |||||||| |||||||||||||||||||| ||||||
seq2  GGTCTAATGAGCTAACAGGTCAAGTTTGAGCAAGAGGGCATAGTTTTCTA  900

seq1  TACCTGGTAATGATTTTGTTTGTTTGTTTGTTTGTTTTTTCATCCAGACT  949
      ||||||| ||||||||||||   |||||||||   ||||||||||| |||
seq2  TACCTGG-AATGATTTTGTT--GTTGTTTGTT--GTTTTTCATCCAAACT  945

seq1  TTGGGTGGTAGTTGCTCAAATTCTAGACCTTGTGTATCCCAAGATAC  996
      |||||||| ||||||||||  |||||||||||| |||||||||||||
seq2  TTGGGTGG-AGTTGCTCAA--TCTAGACCTTGT-TATCCCAAGATAC  988

seq1: chr5_128384299_128385340
seq2: B6Ng01-006K22.g_66_1100 (reverse)

seq1  CAGGCTGTTTCTCCATTCTTAATTCTCCAGGTTTTAAACTAATACCTGCC  50
      |||||||||| ||||||||  |||||||||||||||||||||| ||||||
seq2  CAGGCTGTTTTTCCATTCT--ATTCTCCAGGTTTTAAACTAAT-CCTGCC  47

seq1  AAGATTTGATTTCAATTCTTGTAAAGGTGAGTATAATGTGAAGTAAATTA  100
       |||||||||||| ||||||||||  ||||||||||||||||||||||||
seq2  -AGATTTGATTTC-ATTCTTGTAA--GTGAGTATAATGTGAAGTAAATTA  93

seq1  GATTCTTTAATGGGCTTTCCTTTCGTATGAGCGAGGGATATAAAAGGCCC  150
      ||||||||||||||| |||||||||||||||||| ||||||||||| |||
seq2  GATTCTTTAATGGGCCTTCCTTTCGTATGAGCGAAGGATATAAAAGCCCC  143

seq1  GATATGAAATAGCAAATTGTTCTTGATTAAATTTTTTA-TGGGTTTATCT  199
      | ||| |||||||||| ||||||||||||||||||||| || ||||||||
seq2  GTTATAAAATAGCAAA-TGTTCTTGATTAAATTTTTTATTGAGTTTATCT  192

seq1  AACAGCAGATGGAACGCATCTCTTAGGTAATTGCTTCTATTAATGGCACA  249
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACAGCAGATGGAACGCATCTCTTAAGTAATTGCTTCTATTAATGGCACA  242

seq1  CCTTGGGATGTTAATTAACCATTTGGATGTCCGAATTTTGATTGGTTTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGATGTTAATTAACCATTTGGATGTCCGAATTTTGATTGGTTTTG  292

seq1  TTTTCTTGCATAAACAAAAGGGGAAGCTGACTCAGGTTTCAGCTTGGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCATAAACAAAAGGGGAAGCTGACTCAGGTTTCAGCTTGGAAT  342

seq1  CAGAACACTCTCTTGTAAAGGAAAAGTTCCTTTGCCAAGTGTTAGAGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTCTCTTGTAAAGGAAAAGTTCCTTTGCCAAGTGTTAGAGAGC  392

seq1  TAGGAGGAGGCAGAGACAGGGATGGAAGACAAGGAAAGTGACCCATGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAGGCAGAGACAGGGATGGAAGACAAGGAAAGTGACCCATGTGT  442

seq1  ACCACGAGTCAGAGGGTACTTGTTGCATGAGGCTTCCTCAGTCTAGAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGAGTCAGAGGGTACTTGTTGCATGAGGCTTCCTCAGTCTAGAGGT  492

seq1  AAGGATGGAGAAATTGGATGCAGGAGCGGAACTAGAAGAGAAGAAAAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGAGAAATTGGATGCAGGAGCGGAACTAGAAGAGAAGAAAAACC  542

seq1  AAGAGGCTGCATCAGCCAAGTCTGCTTTCTGTGCCCAAAGTACAACCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGCATCAGCCAAGTCTGCTTTCTGTGCCCAAAGTACAACCATA  592

seq1  GGAGACCTTCATGCTGGTTGTTAAGAAGCAGGCTTTTGTTCTGCTGCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTTCATGCTGGTTGTTAAGAAGCAGGCTTTTGTTCTGCTGCTTC  642

seq1  TGGGAACACATGAGGCCTCCACTCCATCCAGAAGGACAGAATGAGGCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACACATGAGGCCTCCACTCCATCCAGAAGGACAGAATGAGGCTTC  692

seq1  TTAACCATCAATTCAAATGCCCATTGAGAGTGGTCTGTGCTCATCAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATCAATTCAAATGCCCATTGAGAGTGGTCTGTGCTCATCAAACA  742

seq1  TGGTGTTGTTCCTTAGTAAAGTCCTGAGCCTCCCATTTTAGATGTGGCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGTTCCTTAGTAAAGTCCTGAGCCTCCCATTTTAGATGTGGCAC  792

seq1  ATAGCTTGCTTCAGATTGGAAGTCACTATTAACACCTTCACTATTATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGCTTCAGATTGGAAGTCACTATTAACACCTTCACTATTATTAA  842

seq1  CTAATATTGTCTTTGGACGAATTCAGTGTACATACACGTGTACCCGCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTGTCTTTGGACGAATTCAGTGTACATACACGTGTACCCGCACA  892

seq1  CATGGATACACATACCAACCCATCCCAATCCCAAAGTCTGTTGTGACTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATACACATACCAACCCATCCCAATCCCAAAGTCTGTTGTGACTCA  942

seq1  TTCCTATTATGGAAGCTCATAGTTGGTGCTAAGGCTCACTGTCCATCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTATGGAAGCTCATAGTTGGTGCTAAGGCTCACTGTCCATCCTG  992

seq1  CCAGTGTCTGTGTGTCTGACAAATGGACCACATCATAGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCTGTGTGTCTGACAAATGGACCACATCATAGAATTC  1035