BAC Information

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BAC

Clone NameB6Ng01-007A22
Chromosome5 (Build37)
Map Location 67,681,075 - 67,854,351
singlet/doubletdoublet
Overlap geneTmem33, Slc30a9, EG666938
Upstream geneNsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
Downstream geneC330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007A22.bB6Ng01-007A22.g
ACCDH843744DH843745
length1,133420
definitionDH843744|Mus musculus domesticus DNA, BAC clone: B6Ng01-007A22, 5' end.DH843745|Mus musculus domesticus DNA, BAC clone: B6Ng01-007A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,681,075 - 67,682,209)(67,853,926 - 67,854,351)
sequence
gaattccctggatcagggaagttcaacactggcaatgtgttggtgtagct
caacaggcactacatagctttggaagcccggagttgtttctcagcagctc
cttaatgcacatggtctttcatagtttgactgcaaagccattcttggagc
tggtgtctatcaaagatatcaaaggagctgctgggaatttgaaaggtttc
ctgtaattagttaatcagtgtgaattttgtgatttttgagatggcactta
ggtggcccattcagaatggatggaatctcgggtaaaggcttctctctgtg
gccttctctttgtgatgcgcatgccatgtacccagcccacactgagtgtg
agtcagtagtgacagacagcatgcagtaagtattctctgtatctcaagtg
gctctttcttagaaaaccataggaaaaagattattgatagctgtgtttgc
tagagtcttttaacgacgctattggctattgtaggagaaagaagggcaca
agagtcataccctaccttttccttccttccctccttccttccttccatcc
atccatccatccatccatccccctgagacggggtttctctttgtagacct
ttgaacccagggatcctcctgtctctgcctcccatctttcctagtttttt
aaaggtacattaaaaaaaataggctcagcattttttaaactaacgttgtt
cataacatttaattccaaacgtttactattttttgttactttaaggacaa
ttccttttggcactagtttttgtctacaagtatctgtaagttgagaccaa
aagagcaaactcttagccaggcaacacttacattgtgtatatattggaac
aaatatacaaggcttgcagagattagcaatactcataggaactgtttgat
tttataactgcatcgcttctggtgcttgatacaatgggatctattgagct
aaaaaaaattgtatatacagtacgtcagcacttcttacgtctctgaatcc
attttaatatattgtatagggttgggggagttatatttaactcttcgagc
cattattattctggctaaaatttgtaaattaaatggaaaatttatcccct
ctcctgattccagacaaggcaaatatgctaatg
acatgagtagaaaagtaagattagaggctggagagacggctccccggtta
agagcgctggctgctttttcagaactcctgagttccattccaggatctag
tggcttacagccatctgtgatgggacctgatgccctctttggggcacagg
tgtacatacagacagagcattcaaatacataaaataaataaataaatctt
taaaaagaagaaaagaaaattcttttcttctttatgttaaaaaaagtgat
gactgctgttggggaaagatcagggtccttttagaggtttgacaatgaag
acagacattggagcaactgctaaaaaaagattggctaacaggaggtgttt
gaggggtgacaggtagggaagggtgaagcttaggtaacaggggacaggat
gatgtagaagaggggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67681075_67682209
seq2: B6Ng01-007A22.b_46_1178

seq1  GAATTCCCTGGATCAGGGAAGTTCAACACTGGCAATGTGTTGGTGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGATCAGGGAAGTTCAACACTGGCAATGTGTTGGTGTAGCT  50

seq1  CAACAGGCACTACATAGCTTTGGAAGCCCGGAGTTGTTTCTCAGCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCACTACATAGCTTTGGAAGCCCGGAGTTGTTTCTCAGCAGCTC  100

seq1  CTTAATGCACATGGTCTTTCATAGTTTGACTGCAAAGCCATTCTTGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGCACATGGTCTTTCATAGTTTGACTGCAAAGCCATTCTTGGAGC  150

seq1  TGGTGTCTATCAAAGATATCAAAGGAGCTGCTGGGAATTTGAAAGGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTATCAAAGATATCAAAGGAGCTGCTGGGAATTTGAAAGGTTTC  200

seq1  CTGTAATTAGTTAATCAGTGTGAATTTTGTGATTTTTGAGATGGCACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTAGTTAATCAGTGTGAATTTTGTGATTTTTGAGATGGCACTTA  250

seq1  GGTGGCCCATTCAGAATGGATGGAATCTCGGGTAAAGGCTTCTCTCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCATTCAGAATGGATGGAATCTCGGGTAAAGGCTTCTCTCTGTG  300

seq1  GCCTTCTCTTTGTGATGCGCATGCCATGTACCCAGCCCACACTGAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCTTTGTGATGCGCATGCCATGTACCCAGCCCACACTGAGTGTG  350

seq1  AGTCAGTAGTGACAGACAGCATGCAGTAAGTATTCTCTGTATCTCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTAGTGACAGACAGCATGCAGTAAGTATTCTCTGTATCTCAAGTG  400

seq1  GCTCTTTCTTAGAAAACCATAGGAAAAAGATTATTGATAGCTGTGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTTAGAAAACCATAGGAAAAAGATTATTGATAGCTGTGTTTGC  450

seq1  TAGAGTCTTTTAACGACGCTATTGGCTATTGTAGGAGAAAGAAGGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTTTTAACGACGCTATTGGCTATTGTAGGAGAAAGAAGGGCACA  500

seq1  AGAGTCATACCCTACCTTTTCCTTCCTTCCCTCCTTCCTTCCTTCCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATACCCTACCTTTTCCTTCCTTCCCTCCTTCCTTCCTTCCATCC  550

seq1  ATCCATCCATCCATCCATCCCCCTGAGACGGGGTTTCTCTTTGTAGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATCCATCCATCCCCCTGAGACGGGGTTTCTCTTTGTAGACCT  600

seq1  TTGAACCCAGGGATCCTCCTGTCTCTGCCTCCCATCTTTCCTAGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCAGGGATCCTCCTGTCTCTGCCTCCCATCTTTCCTAGTTTTTT  650

seq1  AAAGGTACATTAAAAAAAATAGGCTCAGCATTTTTTAAACTAACGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACATTAAAAAAAATAGGCTCAGCATTTTTTAAACTAACGTTGTT  700

seq1  CATAACATTTAATTCCAAACGTTTACTATTTTTTGTTACTTTAAGGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATTTAATTCCAAACGTTTACTATTTTTTGTTACTTTAAGGACAA  750

seq1  TTCCTTTTGGCACTAGTTTTTGTCTACAAGTATCTGTAAGTTGAGACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGGCACTAGTTTTTGTCTACAAGTATCTGTAAGTTGAGACCAA  800

seq1  AAGAGCAAACTCTTAGCCAGGCAACACTTACATTGTGTATATATTGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAACTCTTAGCCAGGCAACACTTACATTGTGTATATATTGGAAC  850

seq1  AAATATACAAGGCTTGCAGAGATTAGCAATACTCATAGGAACTGTTTGA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATATACAAGGCTTGCAGAGATTAGCAATACTCATAGGAACTGTTTGAT  900

seq1  TTTATAACTGCATCGCTTCTGGTGCTTGATACAATGGGATCTATTGAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACTGCATCGCTTCTGGTGCTTGATACAATGGGATCTATTGAGCT  950

seq1  AAAAAAAATTGTATATACAGTACGTCAGCACTTCTTACGTCTCTTGAATC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAAAAAATTGTATATACAGTACGTCAGCACTTCTTACGTCTC-TGAATC  999

seq1  CATTTTTAATATATTGTATAGG--TTGGGGAGTTATATAT-ACTCTTCAA  1046
      || |||||||||||||||||||  | |||||||||||| | ||||||| |
seq2  CA-TTTTAATATATTGTATAGGGTTGGGGGAGTTATATTTAACTCTTCGA  1048

seq1  GCCATTATTATCCTGGCTATAAATTTATAAAATAAATTGAAAAATTTAT-  1095
      ||||||||||| ||||||| |||||| |||| |||| || ||||||||| 
seq2  GCCATTATTATTCTGGCTA-AAATTTGTAAATTAAA-TGGAAAATTTATC  1096

seq1  CACTCTCCTGTATTCAAGACCAAAGCACATAATGCTAATG  1135
      | |||||||| |||| ||| ||| ||| || |||||||||
seq2  CCCTCTCCTG-ATTCCAGA-CAAGGCAAAT-ATGCTAATG  1133

seq1: chr5_67853926_67854351
seq2: B6Ng01-007A22.g_65_490 (reverse)

seq1  TCCCTCCCCTCTTCTACATCATCCTGTCCCCTGTTACCTAAGCTTCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCTCTTCTACATCATCCTGTCCCCTGTTACCTAAGCTTCACCC  50

seq1  TTCCCTACCTGTCACCCCTCAAACACCTCCTGTTAGCCAATCTTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCTGTCACCCCTCAAACACCTCCTGTTAGCCAATCTTTTTTTA  100

seq1  GCAGTTGCTCCAATGTCTGTCTTCATTGTCAAACCTCTAAAAGGACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCTCCAATGTCTGTCTTCATTGTCAAACCTCTAAAAGGACCCTG  150

seq1  ATCTTTCCCCAACAGCAGTCATCACTTTTTTTAACATAAAGAAGAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCCCAACAGCAGTCATCACTTTTTTTAACATAAAGAAGAAAAGA  200

seq1  ATTTTCTTTTCTTCTTTTTAAAGATTTATTTATTTATTTTATGTATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTCTTCTTTTTAAAGATTTATTTATTTATTTTATGTATTTGA  250

seq1  ATGCTCTGTCTGTATGTACACCTGTGCCCCAAAGAGGGCATCAGGTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTCTGTATGTACACCTGTGCCCCAAAGAGGGCATCAGGTCCCA  300

seq1  TCACAGATGGCTGTAAGCCACTAGATCCTGGAATGGAACTCAGGAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGGCTGTAAGCCACTAGATCCTGGAATGGAACTCAGGAGTTCT  350

seq1  GAAAAAGCAGCCAGCGCTCTTAACCGGGGAGCCGTCTCTCCAGCCTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCAGCCAGCGCTCTTAACCGGGGAGCCGTCTCTCCAGCCTCTAA  400

seq1  TCTTACTTTTCTACTCATGTGAATTC  426
      ||||||||||||||||||||||||||
seq2  TCTTACTTTTCTACTCATGTGAATTC  426