BAC Information

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BAC

Clone NameB6Ng01-007E23
Chromosome5 (Build37)
Map Location 43,235,710 - 43,375,112
singlet/doubletdoublet
Overlap geneLOC433883
Upstream geneLOC384308, LOC100040588, EG636612
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007E23.bB6Ng01-007E23.g
ACCDH843918DH843919
length1,0641,103
definitionDH843918|Mus musculus domesticus DNA, BAC clone: B6Ng01-007E23, 5' end.DH843919|Mus musculus domesticus DNA, BAC clone: B6Ng01-007E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,374,040 - 43,375,112)(43,235,710 - 43,236,827)
sequence
gaattcacataaagctgtgtctgatagaatatgttgtttgtaataccact
tagcttatggtaagttggtagctggagacaggggaattcctagaacctcc
tgggatagatggccaggcataggtgcagtaaaacaacaaagagagcctga
ctcaaaataagctgaaggtaaaagctgttgtctgatctctgtgtatgtac
tggcattcataggaatgcacacaggaatacacatgcatatacataagcac
atcccacatgacaaatgactaaaaataaaaaaaatccatgaatttataat
taatacaagaaaatggatgaaatgaactccatactgttacaaatattatt
gatacaagcaaatgtatctaacatagtgaatacattctaaaaacaatgtt
atgtgcctttttttggttttgtttctcttaatatactttgtggatacttt
tgtagatactttgtggatacttcagtacacatgactccattatattattg
caggatattctttataatgttccattatatttaactattcagatatacta
taacgtttgtatcattaaacatagattatttgcaatttggaagattttat
aaaaaaaaaaccttttatttatttttattttatgtatacgagtatttgtt
gcatgcatgcatgtgccccatatgcattcctggtgcctgggaggccagaa
gaagtttcaggtcccatggaactgaagttatagatggttgtaagccacca
tgcatgtgctgggtgtcaaacatgctctctacaagagcagaatgccctct
taactgctaagccatctctctggccctcttatttgcaacattttattttt
ccttccccaatccacattagtaccctcgactttgcattgttgaatgcatg
tgtgggtaaatcaactgaagaacaatctctggagtggaaattcttgagtt
aaaagtattttcatggataatgaccttttgccaaattgacttcaagagtt
acgccaattatagcccaatcacagggtggtgaatatctgttccacaatct
tgcaaagcctattt
gaattcacttgttcttgtgagcactaccccagacttctgagagcagcagt
cctcaccagtattcaatggacaattacattttcacatgaatttgagaagg
ggaaatcatactgaaacaacccctgaaaggccctgatagtgcttgcctaa
tcaactaactgaatctcagacattccccacttctggcttgtaatattcat
tttgatcttttccactgttttcctctcgaagtgttcaagagaaatgaact
ccattctgttttttaaatatgcttgagtttctgcacaattccattttcca
cgattctgtcccaattcctctgctttaaataagacccatgtgatttcaca
tttcaaaatgttgctccttctcacacaatttccatgaccagtacaggtgt
tattctcacatatccccacaactataaatattcagcacccatattttatt
gaaagtatttagcatgtagctcttctctttttgagttttccagcatttaa
attctgatcaagaaactagtactcttgaaggaaatgcttgtttcttggtg
aattaatgagtatcacttgaaagtaaaaagaacagtttgtctgtcctcat
agagaaagcctcactgtgcaagaagaatttaagggcatagatattcattg
atctcctcacggctctgacagcacatccaacagaaacaaggtaagagagg
acagatttattttgctcttggtttgaagaatgtaatccaaagcaggcaga
gtgaggtttgtggatgtggaagtatatagctaagaattccatttcttgga
agaaaagaaaacaaaaaatgtggccaaaactagtatataatggaacagag
tgaaaattttctatttcaaagagagaaattgcacatagaagaaatatcta
tcaaatatactagaacaaattcaagccctaaagctccacggatggcatgt
catttcatgggatatcatatgggctccagaggtgccatctttgccatagc
ctgggatgactgcaaatagtgatctcttctcagggagctgttcacctcag
ttttcagcattttatattactagaactctgaactctggtctcttattaga
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43374040_43375112
seq2: B6Ng01-007E23.b_43_1106 (reverse)

seq1  AAATATGGCTTTGGCAAGATTTGTGGGAAACAGATATTCA-CACACTAGT  49
      ||||| |||||| |||||| ||||||  |||||||||||| ||| || ||
seq2  AAATA-GGCTTT-GCAAGA-TTGTGG--AACAGATATTCACCACCCT-GT  44

seq1  GATTGGGCTATAAATTGGCGTAACTTCTTTGAAGGTCAATTTGGCAAAAG  99
      ||||||||||| |||||||||||||   ||||| ||||||||||||||||
seq2  GATTGGGCTAT-AATTGGCGTAACT--CTTGAA-GTCAATTTGGCAAAAG  90

seq1  GTCAATATCCATGAAAATACTTTTAACTC-AGAATTTCCACTCCAGAGAT  148
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCATTATCCATGAAAATACTTTTAACTCAAGAATTTCCACTCCAGAGAT  140

seq1  TGTTCTTCAGTTGATTTACCCACACATGCATTCAACAATGCAAAGTCGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCAGTTGATTTACCCACACATGCATTCAACAATGCAAAGTCGAG  190

seq1  GGTACTAATTGTGGATTGGGGAAGGAAAAATAAAATGTTGCAAATAAGAG  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAA-TGTGGATTGGGGAAGGAAAAATAAAATGTTGCAAATAAGAG  239

seq1  GGCCAGAGAGATGGCTTAGCAGTTAAGAGGGCATTCTGCTCTTGTAGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGAGATGGCTTAGCAGTTAAGAGGGCATTCTGCTCTTGTAGAGA  289

seq1  GCATGTTTGACACCCAGCACATGCATGGTGGCTTACAACCATCTATAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTGACACCCAGCACATGCATGGTGGCTTACAACCATCTATAACT  339

seq1  TCAGTTCCATGGGACCTGAAACTTCTTCTGGCCTCCCAGGCACCAGGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCATGGGACCTGAAACTTCTTCTGGCCTCCCAGGCACCAGGAAT  389

seq1  GCATATGGGGCACATGCATGCATGCAACAAATACTCGTATACATAAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGGGCACATGCATGCATGCAACAAATACTCGTATACATAAAATA  439

seq1  AAAATAAATAAAAGGTTTTTTTTTTATAAAATCTTCCAAATTGCAAATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAAAGGTTTTTTTTTTATAAAATCTTCCAAATTGCAAATAA  489

seq1  TCTATGTTTAATGATACAAACGTTATAGTATATCTGAATAGTTAAATATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTTAATGATACAAACGTTATAGTATATCTGAATAGTTAAATATA  539

seq1  ATGGAACATTATAAAGAATATCCTGCAATAATATAATGGAGTCATGTGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATTATAAAGAATATCCTGCAATAATATAATGGAGTCATGTGTA  589

seq1  CTGAAGTATCCACAAAGTATCTACAAAAGTATCCACAAAGTATATTAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTATCCACAAAGTATCTACAAAAGTATCCACAAAGTATATTAAGA  639

seq1  GAAACAAAACCAAAAAAAGGCACATAACATTGTTTTTAGAATGTATTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAACCAAAAAAAGGCACATAACATTGTTTTTAGAATGTATTCAC  689

seq1  TATGTTAGATACATTTGCTTGTATCAATAATATTTGTAACAGTATGGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGATACATTTGCTTGTATCAATAATATTTGTAACAGTATGGAGT  739

seq1  TCATTTCATCCATTTTCTTGTATTAATTATAAATTCATGGATTTTTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATCCATTTTCTTGTATTAATTATAAATTCATGGATTTTTTTTA  789

seq1  TTTTTAGTCATTTGTCATGTGGGATGTGCTTATGTATATGCATGTGTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTCATTTGTCATGTGGGATGTGCTTATGTATATGCATGTGTATT  839

seq1  CCTGTGTGCATTCCTATGAATGCCAGTACATACACAGAGATCAGACAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGCATTCCTATGAATGCCAGTACATACACAGAGATCAGACAACA  889

seq1  GCTTTTACCTTCAGCTTATTTTGAGTCAGGCTCTCTTTGTTGTTTTACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACCTTCAGCTTATTTTGAGTCAGGCTCTCTTTGTTGTTTTACTG  939

seq1  CACCTATGCCTGGCCATCTATCCCAGGAGGTTCTAGGAATTCCCCTGTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATGCCTGGCCATCTATCCCAGGAGGTTCTAGGAATTCCCCTGTCT  989

seq1  CCAGCTACCAACTTACCATAAGCTAAGTGGTATTACAAACAACATATTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACCAACTTACCATAAGCTAAGTGGTATTACAAACAACATATTCT  1039

seq1  ATCAGACACAGCTTTATGTGAATTC  1073
      |||||||||||||||||||||||||
seq2  ATCAGACACAGCTTTATGTGAATTC  1064

seq1: chr5_43235710_43236827
seq2: B6Ng01-007E23.g_65_1167

seq1  GAATTCACTTGTTCTTGTGAGCACTACCCCAGACTTCTGAGAGCAGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGTTCTTGTGAGCACTACCCCAGACTTCTGAGAGCAGCAGT  50

seq1  CCTCACCAGTATTCAATGGACAATTACATTTTCACATGAATTTGAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAGTATTCAATGGACAATTACATTTTCACATGAATTTGAGAAGG  100

seq1  GGAAATCATACTGAAACAACCCCTGAAAGGCCCTGATAGTGCTTGCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCATACTGAAACAACCCCTGAAAGGCCCTGATAGTGCTTGCCTAA  150

seq1  TCAACTAACTGAATCTCAGACATTCCCCACTTCTGGCTTGTAATATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAACTGAATCTCAGACATTCCCCACTTCTGGCTTGTAATATTCAT  200

seq1  TTTGATCTTTTCCACTGTTTTCCTCTCGAAGTGTTCAAGAGAAATGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTTTTCCACTGTTTTCCTCTCGAAGTGTTCAAGAGAAATGAACT  250

seq1  CCATTCTGTTTTTTAAATATGCTTGAGTTTCTGCACAATTCCATTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGTTTTTTAAATATGCTTGAGTTTCTGCACAATTCCATTTTCCA  300

seq1  CGATTCTGTCCCAATTCCTCTGCTTTAAATAAGACCCATGTGATTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCTGTCCCAATTCCTCTGCTTTAAATAAGACCCATGTGATTTCACA  350

seq1  TTTCAAAATGTTGCTCCTTCTCACACAATTTCCATGACCAGTACAGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGTTGCTCCTTCTCACACAATTTCCATGACCAGTACAGGTGT  400

seq1  TATTCTCACATATCCCCACAACTATAAATATTCAGCACCCATATTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCACATATCCCCACAACTATAAATATTCAGCACCCATATTTTATT  450

seq1  GAAAGTATTTAGCATGTAGCTCTTCTCTTTTTGAGTTTTCCAGCATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTTAGCATGTAGCTCTTCTCTTTTTGAGTTTTCCAGCATTTAA  500

seq1  ATTCTGATCAAGAAACTAGTACTCTTGAAGGAAATGCTTGTTTCTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATCAAGAAACTAGTACTCTTGAAGGAAATGCTTGTTTCTTGGTG  550

seq1  AATTAATGAGTATCACTTGAAAGTAAAAAGAACAGTTTGTCTGTCCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGAGTATCACTTGAAAGTAAAAAGAACAGTTTGTCTGTCCTCAT  600

seq1  AGAGAAAGCCTCACTGTGCAAGAAGAATTTAAGGGCATAGATATTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCTCACTGTGCAAGAAGAATTTAAGGGCATAGATATTCATTG  650

seq1  ATCTCCTCACGGCTCTGACAGCACATCCAACAGAAACAAGGTAAGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCACGGCTCTGACAGCACATCCAACAGAAACAAGGTAAGAGAGG  700

seq1  ACAGATTTATTTTGCTCTTGGTTTGAAGAATGTAATCCAAAGCAGGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTATTTTGCTCTTGGTTTGAAGAATGTAATCCAAAGCAGGCAGA  750

seq1  GTGAGGTTTGTGGATGTGGAAGTATATAGCTAAGAATTTCCATTTCTTGG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGAGGTTTGTGGATGTGGAAGTATATAGCTAAGAA-TTCCATTTCTTGG  799

seq1  AAGAAAAGAAAACAAAAAATGTGGCCAAAAACTAGTATATAATGGAACAG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGAAAAGAAAACAAAAAATGTGGCC-AAAACTAGTATATAATGGAACAG  848

seq1  AGTGAAAA-TTTCTATTTCAAAGAGAGAAATTGCAACATAGAAGAAAATA  899
      |||||||| ||||||||||||||||||||||||| ||||||||| |||||
seq2  AGTGAAAATTTTCTATTTCAAAGAGAGAAATTGC-ACATAGAAG-AAATA  896

seq1  TCTATCAAAATATACTAGAACAAATTCAAAGCCCTAAAGCTCCACGGATG  949
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTATC-AAATATACTAGAACAAATTC-AAGCCCTAAAGCTCCACGGATG  944

seq1  GCATGTCATTTTCATGGTGATATCATATGGGCTCCAGTAGGTTGCACATT  999
      |||||||| |||||||| ||||||||||||||||||| ||||  ||   |
seq2  GCATGTCA-TTTCATGG-GATATCATATGGGCTCCAG-AGGTGCCA---T  988

seq1  CTTTTGCCTATAG-CTGTGATGACTGCAATATAGTGATCTC-TCTCA-TG  1046
      | |||||| |||| ||| ||||||||||| ||||||||||| |||||  |
seq2  C-TTTGCC-ATAGCCTGGGATGACTGCAA-ATAGTGATCTCTTCTCAGGG  1035

seq1  AGCTGGTTCCACTCAGTTTTCAGCATTTTATATTACTAGAACCTCTGAAA  1096
      |||| ||||  |||||||||||||||||||||||||||||| ||||||| 
seq2  AGCT-GTTCACCTCAGTTTTCAGCATTTTATATTACTAGAA-CTCTGAA-  1082

seq1  CCCTGGGGTCTC-TATTAGAACT  1118
        ||  |||||| ||||||||||
seq2  --CTCTGGTCTCTTATTAGAACT  1103