BAC Information

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BAC

Clone NameB6Ng01-007L07
Chromosome5 (Build37)
Map Location 27,292,452 - 27,426,218
singlet/doubletdoublet
Overlap geneDpp6, B930011P16Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007L07.bB6Ng01-007L07.g
ACCDH844194DH844195
length1,039490
definitionDH844194|Mus musculus domesticus DNA, BAC clone: B6Ng01-007L07, 5' end.DH844195|Mus musculus domesticus DNA, BAC clone: B6Ng01-007L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,292,452 - 27,293,495)(27,425,723 - 27,426,218)
sequence
gaattcttgatggagaaaaaaaatcataccagaaagatgtgtgtgttgag
accctaggggctggcgagagttttaaagaagaggtaactttggaaggact
ttataaagaggaagcccctggcttagtgacagaccagctgtggaagatga
atgagagaggaatcaaagaagagacatgaaaacgtgctctctggggatgt
ggaggatttatgctgtcaggcaattgaactgaaacctgtcaagctatgtt
cagttattaccagtggcttatatgtagtcaggggtctgtgtatctgtgtg
tgtgtctgtgtgtctggatgtataaactggtatttataacaaggtacagt
gttctgaaggattctgttattgttgcccctctaggtcttgtacatctttt
tgtagctcaagagcgagtcctaaccttatcacattctctcccttcatgtg
tcctctttccacggctacctcatgctgacctaaatccttgcttacatggg
cactgtattgacctcctattccaggacagaaaggaagtaaacacatttgt
ctgtgttgcctctctttttctttgtcgattctgcaagggctaaggagtaa
taaaaaaatcacaatgactcttagagaaagtagagaaaatgaatggtgtc
atgtatcttaaattaggccatctctggctcagagcaggacctcaggagat
gcaatcttcagtgggaaggaggccatatggcattcaggcaagtttgttct
atctgcatgacctattgtaagttagtttgatgggaagttgtatgtgctgg
ggagatactctaacatataacactccataatgaactcagaactctgtatt
gatgggtctcagtttccttgaaggacatttccccagaatttttccaggtg
ttgacaggagacttatcccgaaaacatgagcatcagattagagacaggct
tcaatttgagcagcaatcagcccacaagcagagtccagaagaaactacac
taatgtcacagggctttggaagtgaatggcaggaacatt
tgagctctgccgtgggaacacactggtgggtgctgtgaaagtgaggtcca
catgggcattgcacccgacactgacaaagtgcttcaggaaaagctcgtta
gtcctcccagctgtgcatcatgcatggcgaattttctagccactgacaaa
tgatcttcataaaatatgactgaattttccaggaagcaaaatctcttaag
gtctagacaaaaaaaaaaaaaaatcagggtagctttacccactaattctc
tagatgaggtgctcttctgaggagcatccttcagatatgagtgatgtagg
tcttgagtgatgtatagagcaatggagacctgcaggtgatgaagaaggaa
cagagaagggctgtatatggtttacagcgaagaacagagaggaagcctat
agcagacgcttctcaatcccagggaagggaagggaaagggaaagaaggga
aagggaaagggaaagaagggaaagggaaagggaaagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27292452_27293495
seq2: B6Ng01-007L07.b_44_1082

seq1  GAATTCTTGATGGAGAAAAAAAATCATACCAGAAAGATGTGTGTGTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATGGAGAAAAAAAATCATACCAGAAAGATGTGTGTGTTGAG  50

seq1  ACCCTAGGGGCTGGCGAGAGTTTTAAAGAAGAGGTAACTTTGGAAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGGGCTGGCGAGAGTTTTAAAGAAGAGGTAACTTTGGAAGGACT  100

seq1  TTATAAAGAGGAAGCCCCTGGCTTAGTGACAGACCAGCTGTGGAAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAGGAAGCCCCTGGCTTAGTGACAGACCAGCTGTGGAAGATGA  150

seq1  ATGAGAGAGGAATCAAAGAAGAGACATGAAAACGTGCTCTCTGGGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAGGAATCAAAGAAGAGACATGAAAACGTGCTCTCTGGGGATGT  200

seq1  GGAGGATTTATGCTGTCAGGCAATTGAACTGAAACCTGTCAAGCTATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTTATGCTGTCAGGCAATTGAACTGAAACCTGTCAAGCTATGTT  250

seq1  CAGTTATTACCAGTGGCTTATATGTAGTCAGGGGTCTGTGTATCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTACCAGTGGCTTATATGTAGTCAGGGGTCTGTGTATCTGTGTG  300

seq1  TGTGTCTGTGTGTCTGGATGTATAAACTGGTATTTATAACAAGGTACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTGTCTGGATGTATAAACTGGTATTTATAACAAGGTACAGT  350

seq1  GTTCTGAAGGATTCTGTTATTGTTGCCCCTCTAGGTCTTGTACATCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAGGATTCTGTTATTGTTGCCCCTCTAGGTCTTGTACATCTTTT  400

seq1  TGTAGCTCAAGAGCGAGTCCTAACCTTATCACATTCTCTCCCTTCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCAAGAGCGAGTCCTAACCTTATCACATTCTCTCCCTTCATGTG  450

seq1  TCCTCTTTCCACGGCTACCTCATGCTGACCTAAATCCTTGCTTACATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCACGGCTACCTCATGCTGACCTAAATCCTTGCTTACATGGG  500

seq1  CACTGTATTGACCTCCTATTCCAGGACAGAAAGGAAGTAAACACATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATTGACCTCCTATTCCAGGACAGAAAGGAAGTAAACACATTTGT  550

seq1  CTGTGTTGCCTCTCTTTTTCTTTGTCGATTCTGCAAGGGCTAAGGAGTTA  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTGTTGCCTCTCTTTTTCTTTGTCGATTCTGCAAGGGCTAAGGAGTAA  600

seq1  TAAAAAAATCACAATGACTCTTAGAGAAAGTAGAGAAAATGAATGGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATCACAATGACTCTTAGAGAAAGTAGAGAAAATGAATGGTGTC  650

seq1  ATGTATCTTAAATTAGGCCATCTCTGGCTCAGAGCAGGACCTCAGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTAAATTAGGCCATCTCTGGCTCAGAGCAGGACCTCAGGAGAT  700

seq1  GCAATCTTCAGTGGGAAGGAGGCCATATGGCATTCAGGCAAGTTTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTCAGTGGGAAGGAGGCCATATGGCATTCAGGCAAGTTTGTTCT  750

seq1  ATCTGCATGACCTATTGTAAGTTAGTTTGATGGGAAGTTGTATGTGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGACCTATTGTAAGTTAGTTTGATGGGAAGTTGTATGTGCTGG  800

seq1  GGAGATACTCTAACATATAACACTCCATAATGAACTCAGAACTCTGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACTCTAACATATAACACTCCATAATGAACTCAGAACTCTGTATT  850

seq1  GATGGGTCTCAGTTTCCTTGAAGGACATTTCCCCAG-ATTTTTCCAGGTG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGGGTCTCAGTTTCCTTGAAGGACATTTCCCCAGAATTTTTCCAGGTG  900

seq1  TTGACAGGAGACTTATCCAGAAGACAATAGAGCATCAGATTAGAGACAGG  949
      |||||||||||||||||| ||| |||   |||||||||||||||||||||
seq2  TTGACAGGAGACTTATCCCGAAAACA--TGAGCATCAGATTAGAGACAGG  948

seq1  CTTCAATTTGAGCAGCCATCAGCCCACAGAGCAGAAGTCACAGAAGAAAC  999
      |||||||||||||||| ||||||||||| ||||| |||| ||||||||||
seq2  CTTCAATTTGAGCAGCAATCAGCCCACA-AGCAG-AGTC-CAGAAGAAAC  995

seq1  AACACAGAATGTCACAGTGCTTTTGGAAGTG-ATGGCAGGAACATT  1044
       ||||  |||||||||| || |||||||||| ||||||||||||||
seq2  TACAC-TAATGTCACAGGGC-TTTGGAAGTGAATGGCAGGAACATT  1039

seq1: chr5_27425723_27426218
seq2: B6Ng01-007L07.g_68_563 (reverse)

seq1  TTCCCTTTCCCTTTCCCTTTCCCTTCTTTCCCTTTCCCTTTCCCTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCCCTTTCCCTTTCCCTTCTTTCCCTTTCCCTTTCCCTTCTTT  50

seq1  CCCTTTCCCTTCCCTTCCCTGGGATTGAGAAGCGTCTGCTATAGGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCTTCCCTTCCCTGGGATTGAGAAGCGTCTGCTATAGGCTTCC  100

seq1  TCTCTGTTCTTCGCTGTAAACCATATACAGCCCTTCTCTGTTCCTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTCTTCGCTGTAAACCATATACAGCCCTTCTCTGTTCCTTCTTC  150

seq1  ATCACCTGCAGGTCTCCATTGCTCTATACATCACTCAAGACCTACATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGCAGGTCTCCATTGCTCTATACATCACTCAAGACCTACATCAC  200

seq1  TCATATCTGAAGGATGCTCCTCAGAAGAGCACCTCATCTAGAGAATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTGAAGGATGCTCCTCAGAAGAGCACCTCATCTAGAGAATTAGT  250

seq1  GGGTAAAGCTACCCTGATTTTTTTTTTTTTTTGTCTAGACCTTAAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGCTACCCTGATTTTTTTTTTTTTTTGTCTAGACCTTAAGAGAT  300

seq1  TTTGCTTCCTGGAAAATTCAGTCATATTTTATGAAGATCATTTGTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCTGGAAAATTCAGTCATATTTTATGAAGATCATTTGTCAGTG  350

seq1  GCTAGAAAATTCGCCATGCATGATGCACAGCTGGGAGGACTAACGAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAATTCGCCATGCATGATGCACAGCTGGGAGGACTAACGAGCTT  400

seq1  TTCCTGAAGCACTTTGTCAGTGTCGGGTGCAATGCCCATGTGGACCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGCACTTTGTCAGTGTCGGGTGCAATGCCCATGTGGACCTCAC  450

seq1  TTTCACAGCACCCACCAGTGTGTTCCCACGGCAGAGCTCAGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGCACCCACCAGTGTGTTCCCACGGCAGAGCTCAGAATTC  496