BAC Information

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BAC

Clone NameB6Ng01-007M08
Chromosome5 (Build37)
Map Location 129,159,905 - 129,363,656
singlet/doubletdoublet
Overlap geneLOC100040398, Piwil1, Rimbp2
Upstream geneGlt1d1, Tmem132d, Fzd10
Downstream geneStx2, Ran, LOC100040441, Gpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007M08.bB6Ng01-007M08.g
ACCDH844240DH844241
length848750
definitionDH844240|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M08, 5' end.DH844241|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,159,905 - 129,160,744)(129,362,909 - 129,363,656)
sequence
gaattctctcccagaaaacctcagagcaaaagggaagggtaaaataggag
cttcaaagcttcaatatcctccccacagcctcacacaaaaagcctaccac
ctcccctcacgacaggagactggggcagaagcccaccttcccacatctca
ttcccctcccccttcccctcccccctccctcctcatcaagtcccatgaaa
atatcaaacaagaaagtgaatctcttcctgtttttcagaagccaaacttg
agcgagtggcctttgatccacagatgtaattagcattagaattggagatt
gaacggatatttgtctaaaagcattaatttaaatcctggcccagtttccc
ccttatcagcgctgtaactctaacagtgcccctggcaaaatcagaagcca
gagaggaagaaggaacagcaactcgagcgggtccttgcgtagtacccaag
agcgcagggaaaaccccacggggaattttttttctgatccagcacaaatg
gaggtattgctgacacacaaacagaacccccacatagttctctccaaaaa
agaataggagatagctcattctggagtggaatcggaatggtggtggccta
ggaacatagattcagggtaccccaaataccatgttccagtgtcaccacag
tgtcacgatgttttctgtagtaatggaagaaagcaatagatcaagtcccc
ttttcagttccactgtgatggtttggatgagaaatgggaaccccagaggt
ttcatgcttggtcttaactttggtggaactgtttaggaaaggatatttgg
ggtgtggccctgtgggagaaggtctgctatctggggattggggttttg
gaattctccagcctgctgctactttagcctcgctgactgtggctgcttca
aaggaaaccactgcaacttcccttgcgaataagccacagaccagatgggc
ttttgaacgtctagtgtgttctgggagctcacttttagatcagtggttgg
gtgaagcttctgtaaaacaggaagaagttggtatcttgggcctgaagaca
acaatggtcaggctcacaggcgaaggatgcttctcctgggaagtaaggga
acagccctctaaaaaatgcatagccccaggccagatggagggcagagtag
ttaggatgggcaccaattgggggcttctgcagagcctcctatcacctgaa
cacagtctctgatggcacagtcttgggaactgactggagcctggatgtgg
tgggtcctgcctgacctgagatgttctgcctctcaaactatatcctggaa
aaccttttttttcttcataaagtacccagcaccagatgtttctgttatag
caaatcaaaacagagcaagacagatggtatatcgaatgagtgggtctctg
aaatagactagctgtgtgatcctccttaagtttcttaacctctctgagct
agcctctggaagaagcctacaaacagacaggtcctatgacaaatgtgtgg
gatgtttacagctgattgtcacttgtctggaaatacagactcagcaatct
cagattttttttcagccgtttttttgggggatgggggggtagaaatatca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_129159905_129160744
seq2: B6Ng01-007M08.b_45_892

seq1  GAATTCTCTCCCAGAAAACCTCAGAGCAAAAGGGAAGGGTAAAATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCAGAAAACCTCAGAGCAAAAGGGAAGGGTAAAATAGGAG  50

seq1  CTTCAAAGCTTCAATATCCTCCCCACAGCCTCACACAAAAAGCCTACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCTTCAATATCCTCCCCACAGCCTCACACAAAAAGCCTACCAC  100

seq1  CTCCCCTCACGACAGGAGACTGGGGCAGAAGCCCACCTTCCCACATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCACGACAGGAGACTGGGGCAGAAGCCCACCTTCCCACATCTCA  150

seq1  TTCCCCTCCCCCTTCCCCTCCCCCCTCCCTCCTCATCAAGTCCCATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCCCCTTCCCCTCCCCCCTCCCTCCTCATCAAGTCCCATGAAA  200

seq1  ATATCAAACAAGAAAGTGAATCTCTTCCTGTTTTTCAGAAGCCAAACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACAAGAAAGTGAATCTCTTCCTGTTTTTCAGAAGCCAAACTTG  250

seq1  AGCGAGTGGCCTTTGATCCACAGATGTAATTAGCATTAGAATTGGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGTGGCCTTTGATCCACAGATGTAATTAGCATTAGAATTGGAGATT  300

seq1  GAACGGATATTTGTCTAAAAGCATTAATTTAAATCCTGGCCCAGTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGATATTTGTCTAAAAGCATTAATTTAAATCCTGGCCCAGTTTCCC  350

seq1  CCTTATCAGCGCTGTAACTCTAACAGTGCCCCTGGCAAAATCAGAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCAGCGCTGTAACTCTAACAGTGCCCCTGGCAAAATCAGAAGCCA  400

seq1  GAGAGGAAGAAGGAACAGCAACTCGAGCGGGTCCTTGCGTAGTACCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGAAGGAACAGCAACTCGAGCGGGTCCTTGCGTAGTACCCAAG  450

seq1  AGCGCAGGGAAAACCCCACGGGGAATTTTTTTTCTGATCCAGCACAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGGGAAAACCCCACGGGGAATTTTTTTTCTGATCCAGCACAAATG  500

seq1  GAGGTATTGCTGACACACAAACAGAACCCCCACATAGTTCTCTCCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTGCTGACACACAAACAGAACCCCCACATAGTTCTCTCCAAAAA  550

seq1  AGAATAGGAGATAGCTCATTCTGGAGTGGAATCGGAATGGTGGTGGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGAGATAGCTCATTCTGGAGTGGAATCGGAATGGTGGTGGCCTA  600

seq1  GGAACATAGATTCAGGGTACCCCAAATACCATGTTCCAGTGTCACCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAGATTCAGGGTACCCCAAATACCATGTTCCAGTGTCACCACAG  650

seq1  TGTCACGATG-TTTCTGTAGTAATGGAAGAAAGCAATAGATCAAGT-CCC  698
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  TGTCACGATGTTTTCTGTAGTAATGGAAGAAAGCAATAGATCAAGTCCCC  700

seq1  TTTTCAGTTCCACTGTGATGGTTTGGATGAG-AATGGGAACCCCAGAGGT  747
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTCAGTTCCACTGTGATGGTTTGGATGAGAAATGGGAACCCCAGAGGT  750

seq1  TCAATGCTTGGTCTCAAC-TTGGTGGAACTGTTTAGGAAGGATTATT--G  794
      |  ||||||||||| ||| |||||||||||||||||||| |  ||||  |
seq2  TTCATGCTTGGTCTTAACTTTGGTGGAACTGTTTAGGAAAGGATATTTGG  800

seq1  GGTGTGGCCTTGTGGGAGAAGGTCTGCCA-CTGGGGAGT-GGGTTTTG  840
      ||||||||| ||||||||||||||||| | ||||||| | ||||||||
seq2  GGTGTGGCCCTGTGGGAGAAGGTCTGCTATCTGGGGATTGGGGTTTTG  848

seq1: chr5_129362909_129363656
seq2: B6Ng01-007M08.g_68_817 (reverse)

seq1  TGATATTTTCTGCCCCCCATCCCCCAAAAAAA-GGCTGAAAAAAAATCTG  49
      ||||||||    |||||||||||||||||||| |||||||||||||||||
seq2  TGATATTTCTACCCCCCCATCCCCCAAAAAAACGGCTGAAAAAAAATCTG  50

seq1  AGAATTGCTGAGTCTGTATTTCCAGAC-AGTGACAATCAGCTGTAAACAT  98
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AG-ATTGCTGAGTCTGTATTTCCAGACAAGTGACAATCAGCTGTAAACAT  99

seq1  -CCACACATTTGTCATCGGACCTGTCTGTTTGTAGGCTTCTTCCAGAGGC  147
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCACACATTTGTCATAGGACCTGTCTGTTTGTAGGCTTCTTCCAGAGGC  149

seq1  TAGCTCAGAGAGGTTAAGAAACTTAAGGAGGATCACACAGCTAGTCTATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGAGAGGTTAAGAAACTTAAGGAGGATCACACAGCTAGTCTATT  199

seq1  TCAGAGACCCACTCATTCGATATACCATCTGTCTTGCTCTGTTTTGTTTT  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGAGACCCACTCATTCGATATACCATCTGTCTTGCTCTGTTTTGATTT  249

seq1  GCTATAACAGAAACATCTGGTGCTGGGTACTTTATGAAGAAAAAAAAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAACAGAAACATCTGGTGCTGGGTACTTTATGAAGAAAAAAAAGGT  299

seq1  TTTCCAGGATATAGTTTGAGAGGCAGAACATCTCAGGTCAGGCAGGACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGATATAGTTTGAGAGGCAGAACATCTCAGGTCAGGCAGGACCC  349

seq1  ACCACATCCAGGCTCCAGTCAGTTCCCAAGACTGTGCCATCAGAGACTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCCAGGCTCCAGTCAGTTCCCAAGACTGTGCCATCAGAGACTGT  399

seq1  GTTCAGGTGATAGGAGGCTCTGCAGAAGCCCCCAATTGGTGCCCATCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGTGATAGGAGGCTCTGCAGAAGCCCCCAATTGGTGCCCATCCTA  449

seq1  ACTACTCTGCCCTCCATCTGGCCTGGGGCTATGCATTTTTTAGAGGGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTGCCCTCCATCTGGCCTGGGGCTATGCATTTTTTAGAGGGCTG  499

seq1  TTCCCTTACTTCCCAGGAGAAGCATCCTTCGCCTGTGAGCCTGACCATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACTTCCCAGGAGAAGCATCCTTCGCCTGTGAGCCTGACCATTG  549

seq1  TTGTCTTCAGGCCCAAGATACCAACTTCTTCCTGTTTTACAGAAGCTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCAGGCCCAAGATACCAACTTCTTCCTGTTTTACAGAAGCTTCA  599

seq1  CCCAACCACTGATCTAAAAGTGAGCTCCCAGAACACACTAGACGTTCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCACTGATCTAAAAGTGAGCTCCCAGAACACACTAGACGTTCAAA  649

seq1  AGCCCATCTGGTCTGTGGCTTATTCGCAAGGGAAGTTGCAGTGGTTTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCTGGTCTGTGGCTTATTCGCAAGGGAAGTTGCAGTGGTTTCCT  699

seq1  TTGAAGCAGCCACAGTCAGCGAGGCTAAAGTAGCAGCAGGCTGGAGAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGCCACAGTCAGCGAGGCTAAAGTAGCAGCAGGCTGGAGAATT  749

seq1  C  748
      |
seq2  C  750