BAC Information

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BAC

Clone NameB6Ng01-007N11
Chromosome5 (Build37)
Map Location 23,442,836 - 23,624,692
singlet/doubletdoublet
Overlap geneDrctnnb1a, LOC627317, Klhl7, LOC100042211
Upstream geneLhfpl3, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410
Downstream geneNupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007N11.bB6Ng01-007N11.g
ACCDH844292DH844293
length862752
definitionDH844292|Mus musculus domesticus DNA, BAC clone: B6Ng01-007N11, 5' end.DH844293|Mus musculus domesticus DNA, BAC clone: B6Ng01-007N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,623,832 - 23,624,692)(23,442,836 - 23,443,587)
sequence
gaattcaaacataagcctatggagaccattatctttcaaacattccactc
cctggcccccataggcttgtagcactatcataatgcaaaatgcattcagt
agaactttaaaagtccccacagtctttcagttttaagactgcttaaggtt
gtggtcgcttcgccgaagtccgcggctcgaagagccggctccgtcgcttc
ccgtcgccatgaagtggatgtttaaggaggaccactctctggaacacaga
tgcgtggaatccgcgaagatcagagcgaagtaccccgaccgagttccggt
gatcgtggaaaaagtctcgggctctcagattgttgacatagacaagagga
agtacttggtcccctctgacatcactgtggctcagttcatgtggatcatc
aggaaaaggatccagcttccctccgagaaggccatcttcctgtttgtgga
caagacagtcccacagtccagcctaactatgggacagctttacgagaagg
aaaaagaggaagatggattcttgtatgtggcctacagcggagagaacact
tttggcttctgaggcccttgctgggctaggtgcgcccttcctgcttgtgt
ctcttgtaaataactggctgttctcagttactctgccagagcctccacac
agacctactagtgcatttgtaactggatttatttcttaatatattggaag
gttttgtttccttagattagtaaattatcatacagagttttattttcagt
tttctttttgtgcactgtcctcatggctatttgctccagggaacctgtcc
tctgggaatcatatttaatgaagatattttccgtaatgaagggaggtagg
tgtggtggtaaa
gaattcttcggaaaataaaggcggaaacaccaaccctcacacttgagatt
caaacttgcagatccttacagaggcctcacatcgtgaggtcctccagaga
ctgctcatttcctctcctgggggatatttcacaatgtgggagctgacagg
agagtgggagggagccggactgagtgaaggtatagacacaggagccatgt
tccttcactgtttgaagggctttacttgactataaaatgttgaagaaaaa
aaaaatgggcggattatactttccatatattctaatataaaaaatttcta
cctagatgtagatagctataaagataactttaaacatattaataaagctg
ataagatcaacagcatggtaaggccaggaagatagaaggtataaaaatta
agccaggcattgtgacacacacctttaatctcagtgctcagaggcaggtg
gatctctgtgaattcaaggccagcctggtctacagagagagttccaggac
agccagaaaaaccctgtcttgaaaaaactaaaactaaaactaaaaccaaa
accaaaaccaaaaccaaaaccaatacaaacaaacacacaaacaaaccata
aaaattgtcacattataaaggaaaggtattcctttattcctgaaaggcaa
agagaaagagctcactgcagttctgggtggaaaaggtctcatctttaaaa
gcagggtgttttgtttgttttattttttattttgtgtttatgtgttttgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23623832_23624692
seq2: B6Ng01-007N11.b_47_908 (reverse)

seq1  TTTACCACCACACCTACCTCCCTTCATTACGG-AAATATCTTCATTAAAT  49
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTACCACCACACCTACCTCCCTTCATTACGGAAAATATCTTCATTAAAT  50

seq1  ATGATTCCCAGAGGACAGGTTCCCTGGAGCAAATAGCCATGAGGACAGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCCAGAGGACAGGTTCCCTGGAGCAAATAGCCATGAGGACAGTG  100

seq1  CACAAAAAGAAAACTGAAAATAAAACTCTGTATGATAATTTACTAATCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGAAAACTGAAAATAAAACTCTGTATGATAATTTACTAATCTA  150

seq1  AGGAAACAAAACCTTCCAATATATTAAGAAATAAATCCAGTTACAAATGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAAACCTTCCAATATATTAAGAAATAAATCCAGTTACAAATGC  200

seq1  ACTAGTAGGTCTGTGTGGAGGCTCTGGCAGAGTAACTGAGAACAGCCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAGGTCTGTGTGGAGGCTCTGGCAGAGTAACTGAGAACAGCCAGT  250

seq1  TATTTACAAGAGACACAAGCAGGAAGGGCGCACCTAGCCCAGCAAGGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAAGAGACACAAGCAGGAAGGGCGCACCTAGCCCAGCAAGGGCC  300

seq1  TCAGAAGCCAAAAGTGTTCTCTCCGCTGTAGGCCACATACAAGAATCCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCCAAAAGTGTTCTCTCCGCTGTAGGCCACATACAAGAATCCAT  350

seq1  CTTCCTCTTTTTCCTTCTCGTAAAGCTGTCCCATAGTTAGGCTGGACTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTTTTCCTTCTCGTAAAGCTGTCCCATAGTTAGGCTGGACTGT  400

seq1  GGGACTGTCTTGTCCACAAACAGGAAGATGGCCTTCTCGGAGGGAAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTCTTGTCCACAAACAGGAAGATGGCCTTCTCGGAGGGAAGCTG  450

seq1  GATCCTTTTCCTGATGATCCACATGAACTGAGCCACAGTGATGTCAGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTTCCTGATGATCCACATGAACTGAGCCACAGTGATGTCAGAGG  500

seq1  GGACCAAGTACTTCCTCTTGTCTATGTCAACAATCTGAGAGCCCGAGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGTACTTCCTCTTGTCTATGTCAACAATCTGAGAGCCCGAGACT  550

seq1  TTTTCCACGATCACCGGAACTCGGTCGGGGTACTTCGCTCTGATCTTCGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACGATCACCGGAACTCGGTCGGGGTACTTCGCTCTGATCTTCGC  600

seq1  GGATTCCACGCATCTGTGTTCCAGAGAGTGGTCCTCCTTAAACATCCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCACGCATCTGTGTTCCAGAGAGTGGTCCTCCTTAAACATCCACT  650

seq1  TCATGGCGACGGGAAGCGACGGAGCCGGCTCTTCGAGCCGCGGACTTCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCGACGGGAAGCGACGGAGCCGGCTCTTCGAGCCGCGGACTTCGG  700

seq1  CGAAGCGACCACAACCTTAAGCAGTCTTAAAACTGAAAGACTGTGGGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCGACCACAACCTTAAGCAGTCTTAAAACTGAAAGACTGTGGGGAC  750

seq1  TTTTAAAGTTCTACTGAATGCATTTTGCATTATGATAGTGCTACAAGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTTCTACTGAATGCATTTTGCATTATGATAGTGCTACAAGCCT  800

seq1  ATGGGGGCCAGGGAGTGGAATGTTTGAAAGATAATGGTCTCCATAGGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCCAGGGAGTGGAATGTTTGAAAGATAATGGTCTCCATAGGCTT  850

seq1  ATGTTTGAATTC  861
      ||||||||||||
seq2  ATGTTTGAATTC  862

seq1: chr5_23442836_23443587
seq2: B6Ng01-007N11.g_68_819

seq1  GAATTCTTCGGAAAATAAAGGCGGAAACACCAACCCTCACACTTGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGAAAATAAAGGCGGAAACACCAACCCTCACACTTGAGATT  50

seq1  CAAACTTGCAGATCCTTACAGAGGCCTCACATCGTGAGGTCCTCCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGCAGATCCTTACAGAGGCCTCACATCGTGAGGTCCTCCAGAGA  100

seq1  CTGCTCATTTCCTCTCCTGGGGGATATTTCACAATGTGGGAGCTGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATTTCCTCTCCTGGGGGATATTTCACAATGTGGGAGCTGACAGG  150

seq1  AGAGTGGGAGGGAGCCGGACTGAGTGAAGGTATAGACACAGGAGCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGAGGGAGCCGGACTGAGTGAAGGTATAGACACAGGAGCCATGT  200

seq1  TCCTTCACTGTTTGAAGGGCTTTACTTGACTATAAAATGTTGAAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTGTTTGAAGGGCTTTACTTGACTATAAAATGTTGAAGAAAAA  250

seq1  AAAAATGGGCGGATTATACTTTCCATATATTCTAATATAAAAAATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGCGGATTATACTTTCCATATATTCTAATATAAAAAATTTCTA  300

seq1  CCTAGATGTAGATAGCTATAAAGATAACTTTAAACATATTAATAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGTAGATAGCTATAAAGATAACTTTAAACATATTAATAAAGCTG  350

seq1  ATAAGATCAACAGCATGGTAAGGCCAGGAAGATAGAAGGTATAAAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATCAACAGCATGGTAAGGCCAGGAAGATAGAAGGTATAAAAATTA  400

seq1  AGCCAGGCATTGTGACACACACCTTTAATCTCAGTGCTCAGAGGCAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCATTGTGACACACACCTTTAATCTCAGTGCTCAGAGGCAGGTG  450

seq1  GATCTCTGTGAATTCAAGGCCAGCCTGGTCTACAGAGAGAGTTCCAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTGAATTCAAGGCCAGCCTGGTCTACAGAGAGAGTTCCAGGAC  500

seq1  AGCCAGAAAAACCCTGTCTTGAAAAAACTAAAACTAAAACTAAAACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAAAACCCTGTCTTGAAAAAACTAAAACTAAAACTAAAACCAAA  550

seq1  ACCAAAACCAAAACCAAAACCAATACAAACAAACACACAAACAAACCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCAAAACCAAAACCAATACAAACAAACACACAAACAAACCATA  600

seq1  AAAATTGTCACATTATAAAGGAAAGGTATTCCTTTATTCCTGAAAGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTCACATTATAAAGGAAAGGTATTCCTTTATTCCTGAAAGGCAA  650

seq1  AGAGAAAGAGCTCACTGCAGTTCTGGGTGGAAAAGGTCTCATCTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGCTCACTGCAGTTCTGGGTGGAAAAGGTCTCATCTTTAAAA  700

seq1  GCAGGGTGTTTTGTTTGTTTTATTTTTTATTTTGTTTTTATGTGTTTTGT  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGGGTGTTTTGTTTGTTTTATTTTTTATTTTGTGTTTATGTGTTTTGT  750

seq1  GT  752
      ||
seq2  GT  752