BAC Information

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BAC

Clone NameB6Ng01-007P01
Chromosome5 (Build37)15 (Build37)
Map Location 64,775,655 - 64,776,48225,919,219 - 25,919,507
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
Downstream geneLOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007P01.bB6Ng01-007P01.g
ACCDH844364DH844365
length827481
definitionDH844364|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P01, 5' end.DH844365|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,775,655 - 64,776,482)(25,919,219 - 25,919,507)
sequence
gaattctcatccttctgactgaattggtcaacctcactgacactgtgggt
gagctaggactgacaatatggctgaggaggtgaagacaccggtcaccagg
tctaacaggctgggttctgtgaatccgagggaactaagaaggaaccaact
cacttgggctgccctctgacctccaccctgagccttggtgcactggttga
aactgatttgtaacaaaatatcttctaaataagtttaacgttacttcgta
actatggaactaattttccttgagctaatctgactaaatggctttagacc
atgactagggcttgttccctaattgagtaattaaaactgattccttctaa
aacagaagaccctctggaaatggaggaagtgttttaggctgaaacaaact
ggtcggaactgaaaggatccccaaacatgcataatggaaactcattcaag
gttctccggctgacttcaggcatggagagtgctcctaatcccttccaaat
gttggacctgatttccctggaactggagaatcgcctttaacatcaaactg
atccctttgctccacactctcccgttgaaaagggagaccattccgaccaa
gctgcttttcctatccccaccccttctcccacaaaggaacttagtgccga
atctagcactgacctcctctccctgggatcctacaggcttgtggggtgca
agagcacagattccgatctctgtcatggcttcatggacctcacctcaacg
cttgcaaatgcatatgtatgtgctatgctcaactcacgtgggatctgtcc
atattttcaccaaaagggcatctattc
actttttaggagaaccacatgtctttctttttgtttgtgtttttaagatt
ggccaatctgaagtttacctcatcagtcctgacgccaaaaagattgcact
ggagaaaaattttaaggagatatccttttgctctcaggtaaattcacagg
gattattgatttaattaggcaggggagggggatggacgaagggcactgag
gctttgtgaatttactggtgtagaggaaagaacaaattataattccaccc
ttccaagataactcttgttttgaccttgaaatttcccttgggtgtatttc
cagaaatcaggattatatacctacatgggtaggtcttgggtgtatttaaa
ctttattgaatgaaggttggagtacatgtttttgaactttacatagattg
agtatcaaagagacccttcgggtcttgcacccgttgttcaactgtacttt
tgggaaactcaaccattatgttattggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64775655_64776482
seq2: B6Ng01-007P01.b_41_867 (reverse)

seq1  GAATCGATGCCCTTTTGGTGAAAATATGGACAGATCCCACTTAAGTTGAG  50
      |||| ||||||||||||||||||||||||||||||||||| | |||||||
seq2  GAATAGATGCCCTTTTGGTGAAAATATGGACAGATCCCACGTGAGTTGAG  50

seq1  CATAGCACATACATATGACTTTGTAAGTGCTGTGGGTGAGGTCCATGAAG  100
      |||||||||||||||||  |||| ||| | ||  ||||||||||||||||
seq2  CATAGCACATACATATGCATTTGCAAGCGTTG-AGGTGAGGTCCATGAAG  99

seq1  CCATGACAGAGATTGGAATCTATACTCTTGCACCCCACAAGCCTCTGGGA  150
      ||||||||||||| ||||||| | |||||||||||||||||||| | |||
seq2  CCATGACAGAGATCGGAATCTGTGCTCTTGCACCCCACAAGCCTGTAGGA  149

seq1  TTCCCTGGAGAGGAGGTCTGTGCTAGATTCGGCACTAAGTTCCTTTGTGG  200
      | ||  |||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCCAGGGAGAGGAGGTCAGTGCTAGATTCGGCACTAAGTTCCTTTGTGG  199

seq1  GAGCTGGGGTGGGGCTGGGAAAAGCTGGTTGGTCGGAATGGTCTCCCTTT  250
      |||  ||||||||| | |||||||| | ||||||||||||||||||||||
seq2  GAGAAGGGGTGGGGATAGGAAAAGCAGCTTGGTCGGAATGGTCTCCCTTT  249

seq1  TCAACGGGAGACTGTGGAGCAAAGGGATCAGTTTGATGTTAAAGGCGATT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGGAGAGTGTGGAGCAAAGGGATCAGTTTGATGTTAAAGGCGATT  299

seq1  TTCCAGTTCCAGGGAAATCA-GACCCACATTTGGAAGGGATTTGGAGCAC  349
       ||||||||||||||||||| | || |||||||||||||||| |||||||
seq2  CTCCAGTTCCAGGGAAATCAGGTCCAACATTTGGAAGGGATTAGGAGCAC  349

seq1  TCTCCCTGCCTGAAGTCAGCCGGAGAACCCTGAATGAGTTTCCACTATGC  399
      ||||| ||||||||||||||||||||||| |||||||||||||| |||||
seq2  TCTCCATGCCTGAAGTCAGCCGGAGAACCTTGAATGAGTTTCCATTATGC  399

seq1  ATGTTTGGGGATCCTCTCAGTTCCTACCAGTTCGCTTCAGCCTAAAACAC  449
      ||||||||||||||| |||||||| ||||||| | |||||||||||||||
seq2  ATGTTTGGGGATCCTTTCAGTTCCGACCAGTTTGTTTCAGCCTAAAACAC  449

seq1  TTCCTCCATTTCCAGAGGGTCTTCTGTTTTAGAAGGAATCAGTTTTAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATTTCCAGAGGGTCTTCTGTTTTAGAAGGAATCAGTTTTAATT  499

seq1  ACTCAATTAGGGAACAAGCCCTACTCTTGGTCTAAAGCCATTTTGTCAGA  549
      ||||||||||||||||||||||| || |||||||||||||||| ||||||
seq2  ACTCAATTAGGGAACAAGCCCTAGTCATGGTCTAAAGCCATTTAGTCAGA  549

seq1  TTAGCTCAATGAAAATTAGTTTTATAGTTACTTAGTAACCTTAAACTTTT  599
      ||||||||| |||||||||||  ||||||||  |||||| |||||||| |
seq2  TTAGCTCAAGGAAAATTAGTTCCATAGTTACGAAGTAACGTTAAACTTAT  599

seq1  TTAGTAGATATTCTGTTACAAATCAGTTTCAAACAGTGCACCAAGGCTCA  649
      |||| ||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TTAGAAGATATTTTGTTACAAATCAGTTTCAACCAGTGCACCAAGGCTCA  649

seq1  GGGTGGAGGTCAGAGGGCAGCCCAAGTGAGTTGGTTCCTTCTTTGTTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGTGGAGGTCAGAGGGCAGCCCAAGTGAGTTGGTTCCTTCTTAGTTCCC  699

seq1  TGCGGATTTACAGAACCCAGCCTGTTAGACCTGGTGACCGGTGTCTTCAC  749
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  T-CGGATTCACAGAACCCAGCCTGTTAGACCTGGTGACCGGTGTCTTCAC  748

seq1  CTCCTCAGCCATCTTGTCAGTCCTAGCTCACCCACAGTGTCACTGAGGTT  799
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CTCCTCAGCCATATTGTCAGTCCTAGCTCACCCACAGTGTCAGTGAGGTT  798

seq1  TACCAATTCAGTCAGAAGGATGAGAATTC  828
       ||||||||||||||||||||||||||||
seq2  GACCAATTCAGTCAGAAGGATGAGAATTC  827

seq1: chr15_25919219_25919507
seq2: B6Ng01-007P01.g_266_553

seq1  CACTGAGTACTTTGTGAATTTACTGGTGTAGAGGAAAGAACAAATTATAA  50
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAG-GCTTTGTGAATTTACTGGTGTAGAGGAAAGAACAAATTATAA  49

seq1  TTCCACCCTTCCAAGATAACTCTTGTTTTGACCTTGAAATTTCCCTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCTTCCAAGATAACTCTTGTTTTGACCTTGAAATTTCCCTTGGG  99

seq1  TGTATTTCCAGGAATCAGCATTATATACCTACATGGGTAGGTCTTGGGTG  150
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  TGTATTTCCAGAAATCAGGATTATATACCTACATGGGTAGGTCTTGGGTG  149

seq1  TATTTAAACTTTATTGAATGAGGGTTGGAGTACATGTTTTTGAACTTTAC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATTTAAACTTTATTGAATGAAGGTTGGAGTACATGTTTTTGAACTTTAC  199

seq1  ATAAATAGAGTAGCAAAGAGACCCTTCGGGTCTAGCACCCTTTGTTCAAC  250
      ||| || ||||| |||||||||||||||||||| |||||| |||||||||
seq2  ATAGATTGAGTATCAAAGAGACCCTTCGGGTCTTGCACCCGTTGTTCAAC  249

seq1  TGTACTTTTGGGAAACTCATCCATTATGTTTTTGGTTTG  289
      ||||||||||||||||||| |||||||||| ||||||||
seq2  TGTACTTTTGGGAAACTCAACCATTATGTTATTGGTTTG  288