BAC Information

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BAC

Clone NameB6Ng01-008A21
Chromosome5 (Build37)
Map Location 46,261,687 - 46,448,911
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008A21.bB6Ng01-008A21.g
ACCDH844439DH844440
length1,096979
definitionDH844439|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A21, 5' end.DH844440|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,261,687 - 46,262,794)(46,448,348 - 46,448,911)
sequence
gaattcatctaagtaattaccattgaggaatatttctataagactaatgg
atctggggaagaatgtactattttgtcctttaatgttgctggtgtttttt
tcaatgtgacctagacgtgagaacttttttccaatggttatgtgtgtgat
gtgagattccagcctgtctcaggctaggcaggtacaggagctgtgaatct
ttattctagcctgggagtgtggagatagtgcacgcaagtttggttttcaa
gggcttatcataaaaagctttttcaggatgtgtgtaactagagctaggcc
tagtagtgtgaggatggcactggtaggtgagtttatagagaattcactag
acaaggctggagccgtaccataagtactaggcctgtaagtgtaaaaatgg
cacaagcgtgattcttgacattttggactttaataaaagttatcagctgt
tccatataatttcctttattaattcacttaccataaccttaaacaagcac
atttgatagtattttcatattagggagaaaaaatataaattggtacagag
aagttaaattcattgaccagcattatatagctagaggtgaagttagaatt
tgaatctctgtcttttcaaatttaactattatttttccttagagaaaagg
aaacaaacacataaacaacaacagaaaaggtggcaaaagctgcttagaaa
ggaattcagtccttctctggacaggcctgctcagcactcccaggtgagtg
acgatttctttgtgcattttcaaaacacttccttcaaacttttcctcagt
tgctttagtcatattctttcatgcattaaaactatctgcgggctggtgag
ataagagcacccaactgctcttctgaaggtccagagttcaaatcccagca
accacatggtggctcacaaccatccgtaacgatctgactttctctctgga
gtgtctgagacagctgtagtgtacttacatataataatattaataaatct
ttcaaaaaacccacttattgagggaacattatacattcacacttgtagat
tgtgattcaagctaaattcactacccttggtgtatcatttagagtc
gaattccacaggaagacgaacacagtcaactaacatggatccttgggaca
ctccgagactgaattaccaaccaaagaacatacacaggctagacctaggt
ttacccacacatatgtagcagatatgcagcttgatctctgtgtcagtcct
gggcaactggagcaggggctatcccaaaagctgttgtctgtatgtgggat
atgttctttatgctgggctgccttgtctggcctcagtggaagagtttaaa
ctaacctttgcagagacctgatgtgccatggtatggagatacaaaggggg
acccccacctactcagaagagaaggggaagctgacaggtaaatattgtcg
gaggggtgactgagaggaggcagcgaatgggatgtaaagtgaatatgtta
taaataaataaaaactaacattaaaatatgtatatttctatacatatatg
catataacatcaattaataaaaaagtgaaagtgcataaattgaaagagag
caaggaataaatgggagagtttgtagggagaaaaggaaagggaaaatgct
gtaattataatatcaaaaataaaagatataatcaaaaaatagaatggtaa
ataaaaactgaggcaggggcttgcctgcaaataagttgttaaaaaacaaa
acaaaacaaataaacaaacaaaaactacaaaaaccaaggctgttggtcac
agagagagcatcatgggcccatggagatacctcctcgacttcagcatgaa
ggaggacatgtgatggagccttccatactccatggaaagtcaggatcatg
aaaagaaaatatacatttcagtcagataatgaaaaaaataaatctgtctg
tgctttgtagcttctatcagaccctgtgttaaagataaaggaaggactgt
tcctttatctctggctatgctctgtgttgaaatcaatataacctgacaca
ctcagtttcatatattcatcatggattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46261687_46262794
seq2: B6Ng01-008A21.b_49_1144

seq1  GAATTCATCTAAGTAATTACCATTGAGGAATATTTCTATAAGACTAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAGTAATTACCATTGAGGAATATTTCTATAAGACTAATGG  50

seq1  ATCTGGGGAAGAATGTACTATTTTGTCCTTTAATGTTGCTGGTGTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGAAGAATGTACTATTTTGTCCTTTAATGTTGCTGGTGTTTTTT  100

seq1  TCAATGTGACCTAGACGTGAGAACTTTTTTCCAATGGTTATGTGTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGACCTAGACGTGAGAACTTTTTTCCAATGGTTATGTGTGTGAT  150

seq1  GTGAGATTCCAGCCTGTCTCAGGCTAGGCAGGTACAGGAGCTGTGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTCCAGCCTGTCTCAGGCTAGGCAGGTACAGGAGCTGTGAATCT  200

seq1  TTATTCTAGCCTGGGAGTGTGGAGATAGTGCACGCAAGTTTGGTTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGCCTGGGAGTGTGGAGATAGTGCACGCAAGTTTGGTTTTCAA  250

seq1  GGGCTTATCATAAAAAGCTTTTTCAGGATGTGTGTAACTAGAGCTAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATCATAAAAAGCTTTTTCAGGATGTGTGTAACTAGAGCTAGGCC  300

seq1  TAGTAGTGTGAGGATGGCACTGGTAGGTGAGTTTATAGAGAATTCACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGTGAGGATGGCACTGGTAGGTGAGTTTATAGAGAATTCACTAG  350

seq1  ACAAGGCTGGAGCCGTACCATAAGTACTAGGCCTGTAAGTGTAAAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTGGAGCCGTACCATAAGTACTAGGCCTGTAAGTGTAAAAATGG  400

seq1  CACAAGCGTGATTCTTGACATTTTGGACTTTAATAAAAGTTATCAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCGTGATTCTTGACATTTTGGACTTTAATAAAAGTTATCAGCTGT  450

seq1  TCCATATAATTTCCTTTATTAATTCACTTACCATAACCTTAAACAAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATAATTTCCTTTATTAATTCACTTACCATAACCTTAAACAAGCAC  500

seq1  ATTTGATAGTATTTTCATATTAGGGAGAAAAAATATAAATTGGTACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAGTATTTTCATATTAGGGAGAAAAAATATAAATTGGTACAGAG  550

seq1  AAGTTAAATTCATTGACCAGCATTATATAGCTAGAGGTGAAGTTAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATTCATTGACCAGCATTATATAGCTAGAGGTGAAGTTAGAATT  600

seq1  TGAATCTCTGTCTTTTCAAATTTAACTATTATTTTTCCTTAGAGAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCTGTCTTTTCAAATTTAACTATTATTTTTCCTTAGAGAAAAGG  650

seq1  AAACAAACACATAAACAACAACAGAAAAGGTGGCAAAAGCTGCTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACATAAACAACAACAGAAAAGGTGGCAAAAGCTGCTTAGAAA  700

seq1  GGAATTCAGTCCTTCTCTGGACAGGCCTGCTCAGCACTCCCAGGTGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGTCCTTCTCTGGACAGGCCTGCTCAGCACTCCCAGGTGAGTG  750

seq1  ACGATTTCTTTGTGCATTTTCAAAACACTTCCTTCAAACTTTTCCTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTCTTTGTGCATTTTCAAAACACTTCCTTCAAACTTTTCCTCAGT  800

seq1  TGCTTTAGTCATATTCTTTCATGCATTAAAACTATCTGCGGGCTGGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTCATATTCTTTCATGCATTAAAACTATCTGCGGGCTGGTGAG  850

seq1  ATAAGAGCACCCAACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGCACCCAACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCA  900

seq1  ACCACATGGTGGCTCACAACCATCCGTAACGATCTGACTTTCTCTTCTGG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCACATGGTGGCTCACAACCATCCGTAACGATCTGACTTTCTC-TCTGG  949

seq1  AGTGTCTGAAGACAGCTGTAGTGTACTTACATATAATAAATAATAAATAA  1000
      |||||||| ||||||||||||||||||||||||||||||   || |||||
seq2  AGTGTCTG-AGACAGCTGTAGTGTACTTACATATAATAA--TATTAATAA  996

seq1  ATCTTTTAAAAAAACCCAACTATATGAGGACACATTATACATTCAACCAC  1050
      ||| ||| ||||||||||  ||| |||||  ||||||||||||||  || 
seq2  ATC-TTTCAAAAAACCCACTTAT-TGAGGGAACATTATACATTCA--CA-  1041

seq1  CTTGTAGATTGTGAATTCAAAGCCTAAATTCACTACCCTTGTGGTTATCA  1100
      ||||||||||||| ||||||   |||||||||||||||||| |  |||||
seq2  CTTGTAGATTGTG-ATTCAA--GCTAAATTCACTACCCTTG-GTGTATCA  1087

seq1  TTTA-AGTC  1108
      |||| ||||
seq2  TTTAGAGTC  1096

seq1: chr5_46448348_46448911
seq2: B6Ng01-008A21.g_480_1041 (reverse)

seq1  GAATCCATGATGAATATATGAAACTGAGTGTGGTCAGGTTAATATTGATT  50
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  GAATCCATGATGAATATATGAAACTGAGTGT-GTCAGGTT-ATATTGATT  48

seq1  TCAACACAGAGCATAGCCAGAGATAAAGGAACAGTCCTTCCTTTATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAGAGCATAGCCAGAGATAAAGGAACAGTCCTTCCTTTATCTTT  98

seq1  AACACAGGGTCTGATAGAAGCTACAAAGCACAGACAGATTTATTTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGGTCTGATAGAAGCTACAAAGCACAGACAGATTTATTTTTTTC  148

seq1  ATTATCTGACTGAAATGTATATTTTCTTTTCATGATCCTGACTTTCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGACTGAAATGTATATTTTCTTTTCATGATCCTGACTTTCCATG  198

seq1  GAGTATGGAAGGCTCCATCACATGTCCTCCTTCATGCTGAAGTCGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGAAGGCTCCATCACATGTCCTCCTTCATGCTGAAGTCGAGGAG  248

seq1  GTATCTCCATGGGCCCATGATGCTCTCTCTGTGACCAACAGCCTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCCATGGGCCCATGATGCTCTCTCTGTGACCAACAGCCTTGGTTT  298

seq1  TTGTAGTTTTTGTTTGTTTATTTGTTTTGTTTTGTTTTTTAACAACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTTTTGTTTGTTTATTTGTTTTGTTTTGTTTTTTAACAACTTAT  348

seq1  TTGCAGGCAAGCCCCTGCCTCAGTTTTTATTTACCATTCTATTTTTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCAAGCCCCTGCCTCAGTTTTTATTTACCATTCTATTTTTTGAT  398

seq1  TATATCTTTTATTTTTGATATTATAATTACAGCATTTTCCCTTTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTTATTTTTGATATTATAATTACAGCATTTTCCCTTTCCTTTT  448

seq1  CTCCCTACAAACTCTCCCATTTATTCCTTGCTCTCTTTCAATTTATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACAAACTCTCCCATTTATTCCTTGCTCTCTTTCAATTTATGCAC  498

seq1  TTTCACTTTTTTATTAATTGATGTTATATGCATATATGTATAGAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTTTTTATTAATTGATGTTATATGCATATATGTATAGAAATATA  548

seq1  CATATTTTAATGTT  564
      ||||||||||||||
seq2  CATATTTTAATGTT  562