BAC Information

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BAC

Clone NameB6Ng01-008D15
Chromosome5 (Build37)15 (Build37)
Map Location 18,084,511 - 18,084,5756,084,117 - 6,085,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008D15.bB6Ng01-008D15.g
ACCDH844556DH844557
length9361,128
definitionDH844556|Mus musculus domesticus DNA, BAC clone: B6Ng01-008D15, 5' end.DH844557|Mus musculus domesticus DNA, BAC clone: B6Ng01-008D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(6,084,117 - 6,085,255)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctcgccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattgacaaa
gaaactcacacaatatgtactcactaataagtggatattagccccaaacc
taggatacccaagatatatgatataatttgctaaacacatgaaactcaag
aagaatgaagcactgaagtgtggacactatgcccctccttagatttggga
acaaaacacccatggaaggagttacagagacaaaaaaaaaaaaaaaaaaa
ttcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcc
tccattgttggtgggattgcaagcttgtacaacaactctggaaatcagtc
tggcagttacttagaaaattggacagtactactgaaggatcccgcaatac
ctcctcctgggcatattttccagaagatgtcccacc
gaattccccacctctaagccccttaccccataaaaccccctagcttttca
gcctcgtggctgacatccattatcttctgtgtaggttatgcctcatgtgc
ttacagcaagaaggattcttgtgtttttttgggtgcgctctctctcctga
gactagaggggggtccccgaaagggggtcttacagtttaggtctaaactg
tcctttataggctcgtttctacttgctttttcttctcactgattcttgat
tgaggttgctctgggatacatcacaagctcctccagtcatatacagagcc
agtgcagcagcatgccctcccactgtgatggattctatctcccaatccat
gatccaaagaaaactctgtgtcaggtccatgccacagtgatgagaaagat
aattagtacaacagtctacagcctcattaaattgcatgatatttaactat
atcaaatgttttgaaaaatatgttgctgaattaatataaggcactcataa
tactcctcacttgatatgttttttttttctacagagttggtattagtttt
aaaatcatttatttgaacttaggaatatgatcacattaataacccatttc
tgtcttattggcattgtcacaggattaaattcaccataaccacacaaaaa
aatccaaacccaaaccatatgctaagaaaattgaatacactgctagcttt
tgctttagagttttcataataatttatctgtgaataaaacatgtgtgcag
ttcatttattttaacaaataaatatttcaaactactgacaagaaaaagaa
tatggcagaatttccccaaaacggaattcttttttttttttaagatttat
ttatttttattatatataagtacattgtagctgtcttcagacactccaga
agaggggagtcagatctcattacggatggttgtgagccaccatgtggtgc
tgggatttgaactttagaccttcggagagcagtcggtgctcttacccact
gagccatctcaccagccccccaccccaaaacagaattctaaataagttcc
aagaaaattctttaaatgtatttgccaaattctagtcactgttgttcttg
gattgattttcctcctctggatctaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-008D15.b_366_430 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr15_6084117_6085255
seq2: B6Ng01-008D15.g_66_1193 (reverse)

seq1  AATTAGGATTCAGAGGAAGGAAAAATACAAATCAAAAGAACAACCAGTGA  50
      ||||| ||| |||||| ||||||   |  ||||  |||||||| ||||||
seq2  AATTA-GATCCAGAGG-AGGAAA---ATCAATC-CAAGAACAA-CAGTGA  43

seq1  CTAGAAATTTTGGCAAAATTACA-TTAAAGAATTTTCTTGGAACTTTATT  99
      ||||||  |||||||||  |||| |||||||||||||||||||| |||||
seq2  CTAGAA--TTTGGCAAA--TACATTTAAAGAATTTTCTTGGAAC-TTATT  88

seq1  TAGAATTCTGTTTTGGGGT-GGGGGCTGGTGAGATGGCTCAGTGGGTAAG  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAATTCTGTTTTGGGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAG  138

seq1  AGCACCCGACTGCTCTTCCGAAGGTCTAAAGTTCAAATCCCAGCAACCAC  198
      |||| |||||||||| |||||||||||||||||||||||||||| |||||
seq2  AGCA-CCGACTGCTC-TCCGAAGGTCTAAAGTTCAAATCCCAGC-ACCAC  185

seq1  ATGGTGGCTCACAACCATCCGTAATGAGATCTGACT-CCCTCTTCTGGAG  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGGTGGCTCACAACCATCCGTAATGAGATCTGACTCCCCTCTTCTGGAG  235

seq1  TGTCTGAAGACAGCTACAATGTACTTATATATAATAAAAATAAATAAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGACAGCTACAATGTACTTATATATAATAAAAATAAATAAATC  285

seq1  TTAAAAAAAAAAAAGAATTCCGTTTTGGGGAAATTCTGCCATATTCTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAGAATTCCGTTTTGGGGAAATTCTGCCATATTCTTTT  335

seq1  TCTTGTCAGTAGTTTG-AATATTTATTTGTTAAAATAAATGAACTGCACA  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTGTCAGTAGTTTGAAATATTTATTTGTTAAAATAAATGAACTGCACA  385

seq1  CATGTTTTATTCACAGATAAATTATTATGAAAACTCTAAAGCAAAAGCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTATTCACAGATAAATTATTATGAAAACTCTAAAGCAAAAGCTA  435

seq1  GCAGTGTATTCAATTTTCTTAGCATATGGTTTGGGTTTGGATTTTTTTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTATTCAATTTTCTTAGCATATGGTTTGGGTTTGGATTTTTTTGT  485

seq1  GTGGTTATGGTGAATTTAATCCTGTGACAATGCCAATAAGACAGAAATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATGGTGAATTTAATCCTGTGACAATGCCAATAAGACAGAAATGG  535

seq1  GTTATTAATGTGATCATATTCCTAAGTTCAAATAAATGATTTTAAAACTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAATGTGATCATATTCCTAAGTTCAAATAAATGATTTTAAAACTA  585

seq1  ATACCAACTCTGTAGAAAAAAAAAACATATCAAGTGAGGAGTATTATGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAACTCTGTAGAAAAAAAAAACATATCAAGTGAGGAGTATTATGAG  635

seq1  TGCCTTATATTAATTCAGCAACATATTTTTCAAAACATTTGATATAGTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATATTAATTCAGCAACATATTTTTCAAAACATTTGATATAGTTA  685

seq1  AATATCATGCAATTTAATGAGGCTGTAGACTGTTGTACTAATTATCTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATGCAATTTAATGAGGCTGTAGACTGTTGTACTAATTATCTTTC  735

seq1  TCATCACTGTGGCATGGACCTGACACAGAGTTTTCTTTGGATCATGGATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTGTGGCATGGACCTGACACAGAGTTTTCTTTGGATCATGGATT  785

seq1  GGGAGATAGAATCCATCACAGTGGGAGGGCATGCTGCTGCACTGGCTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATAGAATCCATCACAGTGGGAGGGCATGCTGCTGCACTGGCTCTG  835

seq1  TATATGACTGGAGGAGCTTGTGATGTATCCCAGAGCAACCTCAATCAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACTGGAGGAGCTTGTGATGTATCCCAGAGCAACCTCAATCAAGA  885

seq1  ATCAGTGAGAAGAAAAAGCAAGTAGAAACGAGCCTATAAAGGACAGTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGAGAAGAAAAAGCAAGTAGAAACGAGCCTATAAAGGACAGTTTA  935

seq1  GACCTAAACTGTAAGACCCCCTTTCGGGGACCCCCCTCTAGTCTCAGGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAACTGTAAGACCCCCTTTCGGGGACCCCCCTCTAGTCTCAGGAG  985

seq1  AGAGAGCGCACCCAAAAAAACACAAGAATCCTTCTTGCTGTAAGCACATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCGCACCCAAAAAAACACAAGAATCCTTCTTGCTGTAAGCACATG  1035

seq1  AGGCATAACCTACACAGAAGATAATGGATGTCAGCCACGAGGCTGAAAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAACCTACACAGAAGATAATGGATGTCAGCCACGAGGCTGAAAAG  1085

seq1  CTAGGGGGTTTTATGGGGTAAGGGGCTTAGAGGTGGGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGGTTTTATGGGGTAAGGGGCTTAGAGGTGGGGAATTC  1128