BAC Information

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BAC

Clone NameB6Ng01-008J12
Chromosome5 (Build37)
Map Location 118,955,007 - 118,956,100
singlet/doubletsinglet
Overlap genenone
Upstream geneKsr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162
Downstream geneThrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J12.bB6Ng01-008J12.g
ACCDH844799DH844800
length3871,093
definitionDH844799|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J12, 5' end.DH844800|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cattccagcctactgtctacatagtgaattctaggtcagacagaagtgag
tctctctctctctctctctctctctctctctctctctctctctctctctg
tctctctctctccctccctccctccctctctcccaaaaattttttttttt
tttttttttttttttttttttttttttttttttttttttttattctctca
cgcaaacacacacacacacataggggacgagagagaaagtatatgtgtgt
gaaaaagagtaagagggagggggtgtgtatatatagagctctccctcacc
ctgagcgacaagagagcgaaactggggatagatttataaacccatatgag
ctaaagttgcacagctttccctacacccccttaaatg

gaattctgggtcattggcttttaggaaaagcacctttgcccactaagcca
tgtttttcaagatagggtttctctgtgtagctctggctatcctggaattc
actctgtagcccaggctagcctcggactcagagatctgcctgcctctgcc
tcctgagttctggggttaaaggtatgagacaccactgcccagctcactgg
ccctgattttgaactaaaagagaagttgaactgacctttcttgtccatag
ctcccagatgccagtatcacaggtgtgccgggctggagagcaagcccatg
actttctgcataccaggcaaggacttttccaaccgagctacatttccaac
ctgtaaaccaggctagtagcattgggtgtcattgaatgacaggacatctg
aattgggggtcgactttagaatgtcatcctctgtcatctccccagcatat
ttgtcgctgatggaaagaaggtatgagacaaaaagtagccaacataggaa
gacaggaagcaggtggctctcctctgctgctatcaaaagcaaagcaggca
tggtaggtcctatcccaaaagatttaaattcaaacatatagacatttatg
aacagcccagttcctgacatgcctcatgccgaggttctccctaaacccag
ggataataggatacagtctgatagcgtggtgtccctggggacacctgggg
actccacagtgactacagagcaggacttcccaactccacaggattggcac
ttggggctgggcaacgctctgtcgatgggtctgcaatgagctgtaggagg
ctcagcggtgtgtcagtcagccgcctgttaccgtggcagaattcctgaga
gattaagtaggagcagttaacttttaatcagtttcagcctttcagccagt
ccgcttcatggctctgggcctgaggtaagagaaagaggctggtggatgca
ggatggtaaaaagggagaagctgctcacactatgacggctggagctgaaa
gattaagactaggaagagcttggggacaagatagatcttcaaaggcccat
tcccagggcctatctcctcctgtcagaatcctgctgttcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_118955007_118956100
seq2: B6Ng01-008J12.g_70_1162 (reverse)

seq1  CAGTGACAGGCAGGA-TCTGACAGGA-GAGATAGGCCCCTGGGAATGGGC  48
      ||||||   |||||| |||||||||| |||||||| ||||||||||||||
seq2  CAGTGAACAGCAGGATTCTGACAGGAGGAGATAGG-CCCTGGGAATGGGC  49

seq1  CTTTTGAAGATCTATCTTGTCCCC-AGCTCTTCCCTGTCTTAATCTTTCA  97
      | |||||||||||||||||||||| |||||||||  ||||||||||||||
seq2  C-TTTGAAGATCTATCTTGTCCCCAAGCTCTTCCTAGTCTTAATCTTTCA  98

seq1  GCCTCCAGCCGTCATAGTGTGAGCAGCCTCTCCCATCTTACCATCCTGCA  147
      | ||||||||||||||||||||||||| |||||| | |||||||||||||
seq2  G-CTCCAGCCGTCATAGTGTGAGCAGCTTCTCCCTTTTTACCATCCTGCA  147

seq1  TCCACCAGCCCTCTGTCTCTTACCTCAGGCCCAGAGCCATGGAGCGGACT  197
      |||||||| ||||| |||||||||||||||||||||||||| ||||||||
seq2  TCCACCAG-CCTCTTTCTCTTACCTCAGGCCCAGAGCCATGAAGCGGACT  196

seq1  GGCTGAAAGGCTGAAACTGATTAAAAGTTAACTGCTCCTACTTAATCTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGGCTGAAACTGATTAAAAGTTAACTGCTCCTACTTAATCTCT  246

seq1  CAGGAATTCTGCCACGGTAACAGGCGGCTGACTGACACACCGCTGAGCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTCTGCCACGGTAACAGGCGGCTGACTGACACACCGCTGAGCCT  296

seq1  CCTACAGCTCATTGCAGACCCATCGACAGAGCGTTGCCCAGCCCCAAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGCTCATTGCAGACCCATCGACAGAGCGTTGCCCAGCCCCAAGTG  346

seq1  CCAATCCTGTGGAGTTGGGAAGTCCTGCTCTGTAGTCACTGTGGAGTCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTGTGGAGTTGGGAAGTCCTGCTCTGTAGTCACTGTGGAGTCCC  396

seq1  CAGGTGTCCCCAGGGACACCACGCTATCAGACTGTATCCTATTATCCCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCCCCAGGGACACCACGCTATCAGACTGTATCCTATTATCCCTG  446

seq1  GGTTTAGGGAGAACCTCGGCATGAGGCATGTCAGGAACTGGGCTGTTCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGGAGAACCTCGGCATGAGGCATGTCAGGAACTGGGCTGTTCAT  496

seq1  AAATGTCTATATGTTTGAATTTAAATCTTTTGGGATAGGACCTACCATGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTATATGTTTGAATTTAAATCTTTTGGGATAGGACCTACCATGC  546

seq1  CTGCTTTGCTTTTGATAGCAGCAGAGGAGAGCCACCTGCTTCCTGTCTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGCTTTTGATAGCAGCAGAGGAGAGCCACCTGCTTCCTGTCTTC  596

seq1  CTATGTTGGCTACTTTTTGTCTCATACCTTCTTTCCATCAGCGACAAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGGCTACTTTTTGTCTCATACCTTCTTTCCATCAGCGACAAATA  646

seq1  TGCTGGGGAGATGACAGAGGATGACATTCTAAAGTCGACCCCCAATTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAGATGACAGAGGATGACATTCTAAAGTCGACCCCCAATTCAG  696

seq1  ATGTCCTGTCATTCAATGACACCCAATGCTACTAGCCTGGTTTACAGGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGTCATTCAATGACACCCAATGCTACTAGCCTGGTTTACAGGTT  746

seq1  GGAAATGTAGCTCGGTTGGAAAAGTCCTTGCCTGGTATGCAGAAAGTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTAGCTCGGTTGGAAAAGTCCTTGCCTGGTATGCAGAAAGTCAT  796

seq1  GGGCTTGCTCTCCAGCCCGGCACACCTGTGATACTGGCATCTGGGAGCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCTCTCCAGCCCGGCACACCTGTGATACTGGCATCTGGGAGCTA  846

seq1  TGGACAAGAAAGGTCAGTTCAACTTCTCTTTTAGTTCAAAATCAGGGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGAAAGGTCAGTTCAACTTCTCTTTTAGTTCAAAATCAGGGCCA  896

seq1  GTGAGCTGGGCAGTGGTGTCTCATACCTTTAACCCCAGAACTCAGGAGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGGGCAGTGGTGTCTCATACCTTTAACCCCAGAACTCAGGAGGC  946

seq1  AGAGGCAGGCAGATCTCTGAGTCCGAGGCTAGCCTGGGCTACAGAGTGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGATCTCTGAGTCCGAGGCTAGCCTGGGCTACAGAGTGAA  996

seq1  TTCCAGGATAGCCAGAGCTACACAGAGAAACCCTATCTTGAAAAACATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGATAGCCAGAGCTACACAGAGAAACCCTATCTTGAAAAACATGG  1046

seq1  CTTAGTGGGCAAAGGTGCTTTTCCTAAAAGCCAATGACCCAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGGCAAAGGTGCTTTTCCTAAAAGCCAATGACCCAGAATTC  1093


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