BAC Information

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BAC

Clone NameB6Ng01-008M18
Chromosome5 (Build37)
Map Location 49,436,444 - 49,541,564
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008M18.bB6Ng01-008M18.g
ACCDH844935DH844936
length1,0821,052
definitionDH844935|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M18, 5' end.DH844936|Mus musculus domesticus DNA, BAC clone: B6Ng01-008M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,540,466 - 49,541,564)(49,436,444 - 49,437,509)
sequence
gaattctttttgtccatttccagcatctcctcctggttagaagctatgta
ctttcaatttctcatcaccagcattaagtttctcacctctaagccctgcc
acaaatataaaatgagaaagagaagaataaagagatcacacggaggggat
tataaataatccaagccaagaatttagacagataatgtaagctgtcaagt
ggaacttgaggcttgaagtgactttaataaatatcttgaaaaaatatgtg
atatagatgaatattctcagagaaaaaatatggtaattaaacaaaagaaa
tttttgaatatacactgtgatatgcctaaccaatatggccaccatccaag
aatttaacatctctgttgtcaaaacaaggatgcaaagatccaatgcagag
attgtggggtttgtcatgatagaataacgtactggattcctgccatatat
ggaatgcttataaaagagtccaatgttagtactgataaggatgttgatgg
tggttgtgatgatgttcaagcaattattttgcttacatttatcttcattc
attcatctaatgcgctaacctattttcagaaactcctggcaattacccag
agctgagtcacatgtttatatcatgtagttcttgatgttcttgactgtag
ttctaaagatgctctgagcctaattccaggatttttgtcttaaatttttc
atttcatcacttttcattaaagaacacctgctgctcaagtttattgccta
tttaatctctatttcctgccttcattctagccatgaattaaaatgttatg
ctggcatgttcagaacaagtacctagtctctgcagtcattatttaccttc
aaagagaaatcattgtcacaaaagtatttttcagtgatttgcttattgat
tcacttacattccaatatcaccctctcttccaggccctcatcacacagcc
cttctcacatcacgttggtatcatcacaactttggcaaaacagtccctga
agaactagagtatcctctcccactaagcagaaaagtgtctagtagggaat
ggatcccacaggcgatactgatcactgaggcc
gaattctggttgctaagtctaggagaaagaaattagaagagggtagctaa
attcaaaatgtgtgtgtgtgtatgtgtgtctgtctgtatgcgtgtgaatg
tatgtacatataaagttgtcaaagaataaatttaatacaacaatatcaaa
aaggtaagctgaaaatataggtatgtcagtgttcatcttttctagtgact
taaggaaacacacagccaagtcagacagcaaggaaaattcaattccttca
taacaaatggggctgacaaggctgtccatcttctcattctattttaaatc
gaagattcaatgactaataagccatcagtgtgtcttttaattaagaaata
gcttatgttgtggggagaggttggctggtttaaaaaacatgggcacatca
ttgaaggggtcctcttgttgtacaggctaactcttacttcttcagtaata
acatttcataagtgtagcaatgatgggatgtttcactgagttggtggcac
atgtgccttgacagttccaaaggatatgctcacctcacagcaacactttc
caaactcccatacttgttttgcccatccattccagacagctttcttaaaa
taaataacctgatcctggaaggttaaagaaggcccatggcaaaaggtatt
ataggtcattgtggtatgagtggaattagtgtttatgtttaatctctaaa
ggtattttctaaggataatgagccagcttaaatagaatgtcttcgtaaaa
tataagatcactttaaactttaaaacaaaacactgtattttgtcactttc
tataaaacacttaaaaatgcattactgtaatctttcccctgttaaatatc
actcaatatatctttatttgaatattattatctggaatgactagctgtga
caatgtgagaaatcttgcctatgtataattgtcttaataattaaacggaa
aatccaagcacatttcacgacaactatatggtgatatgaaatatgataca
cataagtattagtgatatccgaattagaggtcattctgatgctagcatgt
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49540466_49541564
seq2: B6Ng01-008M18.b_43_1124 (reverse)

seq1  GGCCTTCAGTGAATCAGTTATCTGCCTGT-GGATCTCATTCCCTAACTGG  49
      |||| |||||| ||||| |||| |||||| ||||| |||||||| ||| |
seq2  GGCC-TCAGTG-ATCAG-TATC-GCCTGTGGGATC-CATTCCCT-ACTAG  44

seq1  GCCACCTTTTCTGGCCTTAGTGGGAGAGGATACCTCTAGTTCTTCAGGGA  99
       |   ||||||||  ||||||||||||||||| |||||||||||||||||
seq2  AC--ACTTTTCTG--CTTAGTGGGAGAGGATA-CTCTAGTTCTTCAGGGA  89

seq1  CTTGTTTTGCCAAAG-TGTGATGATACCAACGGTGAATGTGGGAAGGGGC  148
      | ||||||||||||| ||||||||||||||| ||| ||||| ||| ||||
seq2  C-TGTTTTGCCAAAGTTGTGATGATACCAAC-GTG-ATGTGAGAA-GGGC  135

seq1  TGTGTGATGAGGGGCCTGGAAGGAGAGGGTGATATTGGAATGTAAAGTGA  198
      |||||||||| |||||||||| ||||||||||||||||||||| ||||||
seq2  TGTGTGATGA-GGGCCTGGAA-GAGAGGGTGATATTGGAATGT-AAGTGA  182

seq1  ATCAATAAGCAAATCACTGAAAAAATACTTTTGTGACAATGATTTCTCTT  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCAATAAGCAAATCACTG-AAAAATACTTTTGTGACAATGATTTCTCTT  231

seq1  TGAAGGTAAATAATGACTGCAGAGACTAGGTACTTGTTCTGAACATGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTAAATAATGACTGCAGAGACTAGGTACTTGTTCTGAACATGCCA  281

seq1  GCATAACATTTTAATTCATGGCTAGAATGAAGGCAGGAAATAGAGATTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACATTTTAATTCATGGCTAGAATGAAGGCAGGAAATAGAGATTAA  331

seq1  ATAGGCAATAAACTTGAGCAGCAGGTGTTCTTTAATGAAAAGTGATGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAATAAACTTGAGCAGCAGGTGTTCTTTAATGAAAAGTGATGAAA  381

seq1  TGAAAAATTTAAGACAAAAATCCTGGAATTAGGCTCAGAGCATCTTTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTTAAGACAAAAATCCTGGAATTAGGCTCAGAGCATCTTTAGA  431

seq1  ACTACAGTCAAGAACATCAAGAACTACATGATATAAACATGTGACTCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTCAAGAACATCAAGAACTACATGATATAAACATGTGACTCAGC  481

seq1  TCTGGGTAATTGCCAGGAGTTTCTGAAAATAGGTTAGCGCATTAGATGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTAATTGCCAGGAGTTTCTGAAAATAGGTTAGCGCATTAGATGAA  531

seq1  TGAATGAAGATAAATGTAAGCAAAATAATTGCTTGAACATCATCACAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAGATAAATGTAAGCAAAATAATTGCTTGAACATCATCACAACC  581

seq1  ACCATCAACATCCTTATCAGTACTAACATTGGACTCTTTTATAAGCATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAACATCCTTATCAGTACTAACATTGGACTCTTTTATAAGCATTC  631

seq1  CATATATGGCAGGAATCCAGTACGTTATTCTATCATGACAAACCCCACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGGCAGGAATCCAGTACGTTATTCTATCATGACAAACCCCACAA  681

seq1  TCTCTGCATTGGATCTTTGCATCCTTGTTTTGACAACAGAGATGTTAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATTGGATCTTTGCATCCTTGTTTTGACAACAGAGATGTTAAAT  731

seq1  TCTTGGATGGTGGCCATATTGGTTAGGCATATCACAGTGTATATTCAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATGGTGGCCATATTGGTTAGGCATATCACAGTGTATATTCAAAA  781

seq1  ATTTCTTTTGTTTAATTACCATATTTTTTCTCTGAGAATATTCATCTATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTGTTTAATTACCATATTTTTTCTCTGAGAATATTCATCTATA  831

seq1  TCACATATTTTTTCAAGATATTTATTAAAGTCACTTCAAGCCTCAAGTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATTTTTTCAAGATATTTATTAAAGTCACTTCAAGCCTCAAGTTC  881

seq1  CACTTGACAGCTTACATTATCTGTCTAAATTCTTGGCTTGGATTATTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACAGCTTACATTATCTGTCTAAATTCTTGGCTTGGATTATTTAT  931

seq1  AATCCCCTCCGTGTGATCTCTTTATTCTTCTCTTTCTCATTTTATATTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTCCGTGTGATCTCTTTATTCTTCTCTTTCTCATTTTATATTTG  981

seq1  TGGCAGGGCTTAGAGGTGAGAAACTTAATGCTGGTGATGAGAAATTGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGCTTAGAGGTGAGAAACTTAATGCTGGTGATGAGAAATTGAAA  1031

seq1  GTACATAGCTTCTAACCAGGAGGAGATGCTGGAAATGGACAAAAAGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAGCTTCTAACCAGGAGGAGATGCTGGAAATGGACAAAAAGAATT  1081

seq1  C  1099
      |
seq2  C  1082

seq1: chr5_49436444_49437509
seq2: B6Ng01-008M18.g_71_1122

seq1  GAATTCTGGTTGCTAAGTCTAGGAGAAAGAAATTAGAAGAGGGTAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTGCTAAGTCTAGGAGAAAGAAATTAGAAGAGGGTAGCTAA  50

seq1  ATTCAAAATGTGTGTGTGTGTATGTGTGTCTGTCTGTATGCGTGTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATGTGTGTGTGTGTATGTGTGTCTGTCTGTATGCGTGTGAATG  100

seq1  TATGTACATATAAAGTTGTCAAAGAATAAATTTAATACAACAATATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATATAAAGTTGTCAAAGAATAAATTTAATACAACAATATCAAA  150

seq1  AAGGTAAGCTGAAAATATAGGTATGTCAGTGTTCATCTTTTCTAGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGCTGAAAATATAGGTATGTCAGTGTTCATCTTTTCTAGTGACT  200

seq1  TAAGGAAACACACAGCCAAGTCAGACAGCAAGGAAAATTCAATTCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAACACACAGCCAAGTCAGACAGCAAGGAAAATTCAATTCCTTCA  250

seq1  TAACAAATGGGGCTGACAAGGCTGTCCATCTTCTCATTCTATTTTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGGGGCTGACAAGGCTGTCCATCTTCTCATTCTATTTTAAATC  300

seq1  GAAGATTCAATGACTAATAAGCCATCAGTGTGTCTTTTAATTAAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCAATGACTAATAAGCCATCAGTGTGTCTTTTAATTAAGAAATA  350

seq1  GCTTATGTTGTGGGGAGAGGTTGGCTGGTTTAAAAAACATGGGCACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTTGTGGGGAGAGGTTGGCTGGTTTAAAAAACATGGGCACATCA  400

seq1  TTGAAGGGGTCCTCTTGTTGTACAGGCTAACTCTTACTTCTTCAGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGGTCCTCTTGTTGTACAGGCTAACTCTTACTTCTTCAGTAATA  450

seq1  ACATTTCATAAGTGTAGCAATGATGGGATGTTTCACTGAGTTGGTGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCATAAGTGTAGCAATGATGGGATGTTTCACTGAGTTGGTGGCAC  500

seq1  ATGTGCCTTGACAGTTCCAAAGGATATGCTCACCTCACAGCAACACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTTGACAGTTCCAAAGGATATGCTCACCTCACAGCAACACTTTC  550

seq1  CAAACTCCCATACTTGTTTTGCCCATCCATTCCAGACAGCTTTCTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCCATACTTGTTTTGCCCATCCATTCCAGACAGCTTTCTTAAAA  600

seq1  TAAATAACCTGATCCTGGAAGGTTAAAGAAGGCCCATGGCAAAAGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACCTGATCCTGGAAGGTTAAAGAAGGCCCATGGCAAAAGGTATT  650

seq1  ATAGGTCATTGTGGTATGAGTGGAATTAGTGTTTATGTTTAATCTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCATTGTGGTATGAGTGGAATTAGTGTTTATGTTTAATCTCTAAA  700

seq1  GGTATTTTCTAAGGATAATGAGCCAGCTTAAATAGAATGTCTTCGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTCTAAGGATAATGAGCCAGCTTAAATAGAATGTCTTCGTAAAA  750

seq1  TATAAGATCACTTTAAACTTTAAAACAAAACACTGTATTTTGTCAC-TTC  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATAAGATCACTTTAAACTTTAAAACAAAACACTGTATTTTGTCACTTTC  800

seq1  TATAAAACACTTAAAAATGCATTACTGTAATCTTT-CCCTGTTAAATATC  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATAAAACACTTAAAAATGCATTACTGTAATCTTTCCCCTGTTAAATATC  850

seq1  ACTCAATATATCTTTATTTGAATATTTATTATCTGGAATGACTAGCTGTG  898
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCAATATATCTTTATTTGAATA-TTATTATCTGGAATGACTAGCTGTG  899

seq1  ACAAATGTGAGAAATCTTGCCTATGTATAATTGTCTTAATAATAAAAACG  948
      || ||||||||||||||||||||||||||||||||||||||||  |||||
seq2  AC-AATGTGAGAAATCTTGCCTATGTATAATTGTCTTAATAAT-TAAACG  947

seq1  GAAAAATCCAAAGCACATTTTCACGACAACCTATATGGTGATATGTAAAA  998
      | ||||||| ||||||| ||||||||||| ||||||||||||||| ||| 
seq2  G-AAAATCC-AAGCACA-TTTCACGACAA-CTATATGGTGATATG-AAAT  992

seq1  ATGATAACAACAATAAAGTATTAGTGATATTCCAGAAATCAGATGTTCAA  1048
      |||||    |||   ||||||||||||||| |    ||| ||| | ||| 
seq2  ATGAT----ACACATAAGTATTAGTGATATCC---GAATTAGA-GGTCAT  1034

seq1  TCTGATGCTAGCATGTAA  1066
      ||||||||||||||||||
seq2  TCTGATGCTAGCATGTAA  1052