BAC Information

Click to search

BAC

Clone NameB6Ng01-008O12
Chromosome5 (Build37)X (Build37)
Map Location 41,344,294 - 41,345,331108,290,846 - 108,290,875
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008O12.bB6Ng01-008O12.g
ACCDH845005DH845006
length1,039967
definitionDH845005|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O12, 5' end.DH845006|Mus musculus domesticus DNA, BAC clone: B6Ng01-008O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,344,294 - 41,345,331)(108,290,846 - 108,290,875)
sequence
gaattctagtctctaaaaagaaacaaacaacagtggtcttaaattcctat
tttccccataataacaccatgcaaatattacttccttggctttcatttcc
tttgtcaagatctctcctgtcaatcactgaaaggacaaaacaaatgaaaa
gggataactctggccttgatgccttttgcactttacagaaggaacgactg
ttgcaaagtattctgtctcataacatgtcagagtgagaccttaaatgtga
atttacaaggttataaatatgtgaatttaagattttaaatatgtgaattt
aataaaattgtaggtcataatcaagtattttacaagttacaaagcatctg
agtccataaaatcattgactatgcatgcatatgcttatgttctttctgta
tatatagaaatacacatacatataagaaagtaaattagtgtatcatatat
gtttgatacaaccttttgtgcagacttttgtaaataattttgaataatat
actaaaacataatcattgtatcatgtcatttggctatttattcatttatt
tttttattcatttattcattaattacctgaatcattcatgagtcaatctt
tatggactctcttatcacataccagacaatattcttgtcaagaaaacaca
cacaaataaataagatagatctcatggactgtaggaagtggcctttttcc
tgaggtagacatatatagacataactataaagggaagagtgcaagagagc
aaattattcatattaatgaaaaacacaagattaccattttaggtttaatg
aaatagggagtttagacaagataggtaaaggcagtagacatgggaagcaa
tttttaatatctgttcagttgcatccactagatatcaatttagcatagga
atgtgtaagtatgactcaacttcctctaatcagcaggctgcaggcttttc
ttagcagtacagcttgtggcctgagaaggcatgaatagctcacggatctg
atgacttctcccagcacctgttgggcggcaacccttaaa
gaattcagttagcaagaattttattgaggatttttgcatcgatattcata
agggaatttggtctgaagttctcattctttgttggatctttctgtggttt
aggtatcagagtaattgtggcttcatagaatgagttgggtgagttccttg
tacttctattttgtggaatatcttgtgcagaactggaattagatcttctt
tgaaggtctggtaaaactctgcactaaacccatctggtcctgggcttatt
ttggctgggaaactattaatgactgcgtctatttctttaggggatatggg
actgtttagatcattaacttgatcgtgatttaactttagtacctagtatc
tgtctagaaatttttccatttcatccaggttttccagttttgttgagtat
agccttttgtaaaaggatctgatggtgttttggatttcttcggaatctgt
tgttatgtctcttttttcatttcgattttgttaattagaatgttgtcctt
gtgccctctactgagtctagctaagggtttatctatcttgttgattttct
caaagaaccaactcctcctttggttaattctttgaatagttcttcttgtt
tccacttggttgatttcacccctgagtttgattatttcctgccgtctact
cctcttgggtgaattttcttcctttttttttttagagcttttagatgtgt
tgtcaagctgctagtgtgtgctctctccagtttgtttttggaggcactca
gagctatgagtttccctcttagaaatgctttcattgtgtcccataggttt
gggtatgttgtggcttcattttcattaaactctaaaaagtctttaatttc
tttctttattctttccttgaccaaggtatcattgagaagagtgttgttca
gtttccatgtgaatgttggctctcccttatttatgttgttattgaagatc
agcctagtgcatggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41344294_41345331
seq2: B6Ng01-008O12.b_45_1082 (reverse)

seq1  TTAA-GGTTGCCG-CCAACAGGTGCTGGGGAGAGTCATCAGATCCGTGAG  48
      |||| |||||||| |||||||||||||||   ||||||||||||||||||
seq2  TTAAGGGTTGCCGCCCAACAGGTGCTGGGAGAAGTCATCAGATCCGTGAG  50

seq1  CTATTCATGCCATCTACAGGCCACAAGCTGTACTGCTAAGAAAGGCCTGC  98
      ||||||||||| ||| ||||||||||||||||||||||||||| ||||||
seq2  CTATTCATGCCTTCT-CAGGCCACAAGCTGTACTGCTAAGAAAAGCCTGC  99

seq1  AGCCTGCTGATTAGAGGAAGTTGAGTCATACTTACACATTCCTATGCTAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGATTAGAGGAAGTTGAGTCATACTTACACATTCCTATGCTAA  149

seq1  ATTGATATCTAGTGGATGCAACTGAACAGATTATTAAAATTGCTTCCCAT  198
      |||||||||||||||||||||||||||||||  | |||||||||||||||
seq2  ATTGATATCTAGTGGATGCAACTGAACAGATATTAAAAATTGCTTCCCAT  199

seq1  GTCTACTGCCTTTACCCTATCTTGTCTAAACTCCCTATTTCATTAAACCT  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTACTGCCTTTA-CCTATCTTGTCTAAACTCCCTATTTCATTAAACCT  248

seq1  AAAATGGTAATCTTGTGTTTTTCATTAATATGAATAATTTGCTCTCTTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTAATCTTGTGTTTTTCATTAATATGAATAATTTGCTCTCTTGC  298

seq1  ACTCTTCCCTTTATAGTTATGTCTATATATGTCTACCTCAGGAAAAAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCCTTTATAGTTATGTCTATATATGTCTACCTCAGGAAAAAGGC  348

seq1  CACTTCCTACAGTCCATGAGATCTATCTTATTTATTTGTGTGTGTTTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTACAGTCCATGAGATCTATCTTATTTATTTGTGTGTGTTTTCT  398

seq1  TGACAAGAATATTGTCTGGTATGTGATAAGAGAGTCCATAAAGATTGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAATATTGTCTGGTATGTGATAAGAGAGTCCATAAAGATTGACT  448

seq1  CATGAATGATTCAGGTAATTAATGAATAAATGAATAAAAAAATAAATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGATTCAGGTAATTAATGAATAAATGAATAAAAAAATAAATGAA  498

seq1  TAAATAGCCAAATGACATGATACAATGATTATGTTTTAGTATATTATTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCCAAATGACATGATACAATGATTATGTTTTAGTATATTATTCA  548

seq1  AAATTATTTACAAAAGTCTGCACAAAAGGTTGTATCAAACATATATGATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTACAAAAGTCTGCACAAAAGGTTGTATCAAACATATATGATA  598

seq1  CACTAATTTACTTTCTTATATGTATGTGTATTTCTATATATACAGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTTACTTTCTTATATGTATGTGTATTTCTATATATACAGAAAGA  648

seq1  ACATAAGCATATGCATGCATAGTCAATGATTTTATGGACTCAGATGCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCATATGCATGCATAGTCAATGATTTTATGGACTCAGATGCTTT  698

seq1  GTAACTTGTAAAATACTTGATTATGACCTACAATTTTATTAAATTCACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGTAAAATACTTGATTATGACCTACAATTTTATTAAATTCACAT  748

seq1  ATTTAAAATCTTAAATTCACATATTTATAACCTTGTAAATTCACATTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATCTTAAATTCACATATTTATAACCTTGTAAATTCACATTTAA  798

seq1  GGTCTCACTCTGACATGTTATGAGACAGAATACTTTGCAACAGTCGTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACTCTGACATGTTATGAGACAGAATACTTTGCAACAGTCGTTCC  848

seq1  TTCTGTAAAGTGCAAAAGGCATCAAGGCCAGAGTTATCCCTTTTCATTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAAGTGCAAAAGGCATCAAGGCCAGAGTTATCCCTTTTCATTTG  898

seq1  TTTTGTCCTTTCAGTGATTGACAGGAGAGATCTTGACAAAGGAAATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTTTCAGTGATTGACAGGAGAGATCTTGACAAAGGAAATGAAA  948

seq1  GCCAAGGAAGTAATATTTGCATGGTGTTATTATGGGGAAAATAGGAATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGAAGTAATATTTGCATGGTGTTATTATGGGGAAAATAGGAATTT  998

seq1  AAGACCACTGTTGTTTGTTTCTTTTTAGAGACTAGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACTGTTGTTTGTTTCTTTTTAGAGACTAGAATTC  1038

seq1: chrX_108290846_108290875
seq2: B6Ng01-008O12.g_651_680 (reverse)

seq1  CAACCAAGTGGAAACAAGAAGAACTATTCA  30
      ||||||||||||||||||||||||||||||
seq2  CAACCAAGTGGAAACAAGAAGAACTATTCA  30