BAC Information

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BAC

Clone NameB6Ng01-009F14
Chromosome5 (Build37)13 (Build37)
Map Location 114,796,688 - 114,796,80615,904,319 - 15,905,276
singlet/doubletsingletsinglet
Overlap geneMyo1h
Upstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4
Downstream geneKctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F14.bB6Ng01-009F14.g
ACCDH845314DH845315
length6001,009
definitionDH845314|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F14, 5' end.DH845315|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,796,688 - 114,796,806)(15,904,319 - 15,905,276)
sequence
ggtatagacatgaaagtttcattcatagcattcataacattcgttcatag
catccataatgttcatggtgctggaagatattatgcatgctacaagagga
gacaagtaatccttaagtatacccaagtgtgcaactgcaacagtgactgt
ctgaggaaaaaattcccatttgtgtaatggtggcacaaacctcaaaccta
atggtagtaaccaaccactttctgcttggattgaagaaccatgtcacaat
atgaagctcacacctagcacaattattgaggttgaacctatggctaaatg
ggtcatagtgtcaagaggaaaatctactactatgatgctgctaaatggac
attgcattaaaccaactcctaatgatttattgttagacctatagatcaat
atattttcctacccttttctgagaagcatatattttcaggacatagtgat
taacacagtgttccactgttgggcaaggtgcattgaataagaaattatag
aatgttcagccctaatgagaatatatatatatatatatatatatatatat
atatatatatatatatgtgtgtgtatatatatgatatatatttttatata

gaattccttctagaattggttagatgaaaacccatgaaattatgaaattt
acacataaatggacagaggtagacagaatgattctgagtgatacagccca
gacccagaaagacaagtgtcacacattttacctcatttgtggatgctggc
tttgaatctttagatatgtgcatttcatttggaatacccatagaggtaat
tagtaaagagacatggggtggcattcaagggagaagagagagaataaaga
ggaataacaagacaggaaggaatagttgaggtgggaaacatatatgaata
tgtgtattcacatatatgaattgcttcaaagtaatatttttactaataat
ttgagaattaaatgcagtgtgtttgcattatatttatcctgagatccttc
ctattcccaacctctccacccttgcctcctaactcacagaacttagaaga
tgatgagccatctttttcttcttccttgcttctttgatttcttcctcctt
ttttcctgtcatcctcttcctcatctttgctgtctccccctcctgctctc
tcctcctgcctccactccctttttccccttcaatttgtttttattgtcta
actatttttcggattgggacccatcctggagaatgatcaacctacaaagg
atgacatcattaaaaaaaaatctgaatctccctcttgaaacagattccaa
atgccaataacttctcagctagtgatgggatttcatgcccatcttcctgc
ctctgagctgggattttttttttttttgccttgagtttttgcaatgtctc
tgcatactgtcataattattatgaagtcatttgtgcaactttctttgttt
tatagataccactataatcttaagtaatcctccacctctggatcttacca
tttttcttcccctttttctgcaaagtctttgagccttggaggagtgtgac
atatacataaaattagagctgagtactccatcatttctatattctaaaca
ttgaccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114796688_114796806
seq2: B6Ng01-009F14.b_577_659 (reverse)

seq1  --TATATATATATATAT-GTATATATACACACACATATATAGTCTTTTAA  47
        |||| | ||||||||  ||||||||||||||||||||||         
seq2  TATATAAAAATATATATCATATATATACACACACATATATA---------  41

seq1  AGGACTATATATGTGTATATATTCTTTATTATGTATATATATACAAGAAT  97
           ||||||    ||||||            |||||||||      ||
seq2  -----TATATA----TATATA------------TATATATAT------AT  64

seq1  ATATACATATATATTTTATTCT  119
      ||||| |||||||   ||||||
seq2  ATATATATATATA---TATTCT  83

seq1: chr13_15904319_15905276
seq2: B6Ng01-009F14.g_69_1026

seq1  GAATTCCTTCTAGAATTGGTTAGATGAAAACCCATGAAATTATGAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTAGAATTGGTTAGATGAAAACCCATGAAATTATGAAATTT  50

seq1  ACACATAAATGGACAGAGGTAGACAGAATGATTCTGAGTGATACAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAATGGACAGAGGTAGACAGAATGATTCTGAGTGATACAGCCCA  100

seq1  GACCCAGAAAGACAAGTGTCACACATTTTACCTCATTTGTGGATGCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGAAAGACAAGTGTCACACATTTTACCTCATTTGTGGATGCTGGC  150

seq1  TTTGAATCTTTAGATATGTGCATTTCATTTGGAATACCCATAGAGGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCTTTAGATATGTGCATTTCATTTGGAATACCCATAGAGGTAAT  200

seq1  TAGTAAAGAGACATGGGGTGGCATTCAAGGGAGAAGAGAGAGAATAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGAGACATGGGGTGGCATTCAAGGGAGAAGAGAGAGAATAAAGA  250

seq1  GGAATAACAAGACAGGAAGGAATAGTTGAGGTGGGAAACATATATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAACAAGACAGGAAGGAATAGTTGAGGTGGGAAACATATATGAATA  300

seq1  TGTGTATTCACATATATGAATTGCTTCAAAGTAATATTTTTACTAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTCACATATATGAATTGCTTCAAAGTAATATTTTTACTAATAAT  350

seq1  TTGAGAATTAAATGCAGTGTGTTTGCATTATATTTATCCTGAGATCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTAAATGCAGTGTGTTTGCATTATATTTATCCTGAGATCCTTC  400

seq1  CTATTCCCAACCTCTCCACCCTTGCCTCCTAACTCACAGAACTTAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCAACCTCTCCACCCTTGCCTCCTAACTCACAGAACTTAGAAGA  450

seq1  TGATGAGCCATCTTTTTCTTCTTCCTTGCTTCTTTGATTTCTTCCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCCATCTTTTTCTTCTTCCTTGCTTCTTTGATTTCTTCCTCCTT  500

seq1  TTTTCCTGTCATCCTCTTCCTCATCTTTGCTGTCTCCCCCTCCTGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTCATCCTCTTCCTCATCTTTGCTGTCTCCCCCTCCTGCTCTC  550

seq1  TCCTCCTGCCTCCACTCCCTTTTTCCCCTTCAATTTGTTTTTATTGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCCTCCACTCCCTTTTTCCCCTTCAATTTGTTTTTATTGTCTA  600

seq1  ACTATTTTTCGGATTGGGACCCATCCTGGAGAATGATCAACCTACAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTCGGATTGGGACCCATCCTGGAGAATGATCAACCTACAAAGG  650

seq1  ATGACATCATTAAAAAAAAATCTGAATCTCCCTCTTGAAACAGATTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCATTAAAAAAAAATCTGAATCTCCCTCTTGAAACAGATTCCAA  700

seq1  ATGCCAATAACTTCTCAGCTAGTGATGGGATTTCATGCCCATCTTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATAACTTCTCAGCTAGTGATGGGATTTCATGCCCATCTTCCTGC  750

seq1  CTCTGAGCTGGGATTTTTTTTTTTTTTGCCTTGAGTTTTTGCAATGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCTGGGATTTTTTTTTTTTTTGCCTTGAGTTTTTGCAATGTCTC  800

seq1  TGCATACTGTCATAATTATTATGAAGTCATTTGTGCAAC-TTCTTTGTTT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCATACTGTCATAATTATTATGAAGTCATTTGTGCAACTTTCTTTGTTT  850

seq1  TATAGATAACACTATTATCTTAAGTAATCCTCCACCTCTGGATCTTACCA  899
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TATAGATACCACTATAATCTTAAGTAATCCTCCACCTCTGGATCTTACCA  900

seq1  TTTTTCTTCCCCTTTTTCTGCAAAGTTCTTTGAGCCTTGGAGGAGTGTGA  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTCTTCCCCTTTTTCTGCAAAG-TCTTTGAGCCTTGGAGGAGTGTGA  949

seq1  CATATACAT  958
      |||||||||
seq2  CATATACAT  958