BAC Information

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BAC

Clone NameB6Ng01-009H04
Chromosome5 (Build37)
Map Location 20,466,478 - 20,595,522
singlet/doubletdoublet
Overlap genePtpn12
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
Downstream geneEG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H04.bB6Ng01-009H04.g
ACCDH845384DH845385
length1,159961
definitionDH845384|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H04, 5' end.DH845385|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,594,349 - 20,595,522)(20,466,478 - 20,467,141)
sequence
gaattcactgtgtaaaccaggctggcctcaaactcagagatctcctgcct
ctgcctactgagtgctaggattaagggtatgcatggcatttaatatatct
aaccacatgtgtattcaaatatatgatgtgtgtcctcttatagacattca
catatacatatctatataaatataacatttggaaatgtagttttggaaaa
actttaaatacctgggaaaatataattaatacagaattagagcaaaggtt
aaaagcgattttcacctattataaatcttgtattgtttacttggaaatac
acatgcaaagtgagtagtcaatgacacaatctaaatgccacgaccctgta
aaaaagctcctcatagccagcatatgtgtttgatcgtagccctcggaagg
cagatctctgaattcaaggccaccctagtgtacagtgtgagttctaggac
agccagggctacccagaaaaaccttgtctcaaaaagaaacaaacaaacaa
acaaaaagataggaaattaaagttcctcatattgtgggtagaacccccaa
acataaaattattttgttactacttttatggatcaaaatgtaaatacctg
tgttttctgatgatcttaggcatcccctatgaaagggtatttactgagac
ccacggtactaggactaaagttatatacagttttgtgctgctatgtaggt
gctgtgaattgaacccaggatctacagaagaacaccattgcttttaacga
aaagccatctctccagtctactgtgtgcttcttcaatgtgatcttcctac
cattgttgtgaatattcaagagctgtaatctcaaaattgttttggacaat
cttgtccctgtcctcacagaattttcttgttgaaaaatctaagtaactga
gccaaattattatgtgaaacggtctctttttcttcttctgaaagggttgt
ttgccatccccccaaagggtcatgacccacaggttagaaccattgatcaa
aggatctaacagctccagggacatttttctataggaaaaaatgtgctcag
tacacttccagagagcagcaagctgggcagtattagaatatcactgcgaa
cgttaggaggaataatttggttaagaaagagctaattataatcagaagga
acaacaata
gaattcacagaggagggtggctattactatgatctaaagtttagaatatt
ttcttttattaggtattttctttatttgcatttcaaatgttacccccttc
ctagcttcccctctgaaaattccttatcctttctcccctccccctagaat
agtttcaatttcttagtttgtaagggtccaagatttgccaaagaatgata
ctctggactcaaacagtatataaatgcaaagagtgttttattctgcagac
gcccagcatgctggaacctcccattaccaagatgagagacaaccaagtga
gctcgcaggcctgatttaaagcacattaggggattttagggtaggtgaca
tttaccttgctcaatttctagggacattccattaccagggtgtagaggct
ggaaactgctgcggatccactatccttgcctcaggccaggtagcaggcag
cttctgaggcctggatttgcctggacttgcccagttcttggaaatagaca
tttaggcctcacctcctgaactgccaatttgaagcctgtcaatggagtca
gcctagccttctcagttactgctctatttctgtgaagagacacatgacca
aggcaactcttttttttttttaaagatttatttattattatgtctaagtg
ctgtcttcagatgcaccagaagagggcgtcagatcttattatggaaggtt
gtgagccaccatgtggttgctgggatttgaactcaggaccctcggaagag
cagtcggtgttcttaaccactgagccatctctccagcccccaaggcaact
cttataagagaaagcaatcaattgggggcttccttatagttttagagaat
tagttcatgatgttcatggaggcaaggcatgccactggagcagtagctaa
gagctttccatcctcatctgcaggcagcaggcaaggagagggactggacc
tagcctgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20594349_20595522
seq2: B6Ng01-009H04.b_49_1207 (reverse)

seq1  TATTGTTTGTATCTTCTTGATTATAATTAGCTCTTTTCTTTTAACCAAAA  50
      ||||| ||||  |||| ||||||||||||||||||   | |||||| |||
seq2  TATTG-TTGTTCCTTC-TGATTATAATTAGCTCTT---TCTTAACC-AAA  44

seq1  TAATTCTTCCTTAACGTCTGCAGGTGGTATTCTAATTACTGCCCAGCTTG  100
      | |||| ||| ||||||  ||| ||| |||||||| ||||||||||||||
seq2  TTATTCCTCC-TAACGTTCGCA-GTGATATTCTAA-TACTGCCCAGCTTG  91

seq1  CTGCTCTCTGGAAGTGTACTGAGCACATTTTTTTCCTATAGAAAAATTGT  150
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CTGCTCTCTGGAAGTGTACTGAGCACA-TTTTTTCCTATAGAAAAA-TGT  139

seq1  CCCTGGAGCTGTTAGATCCTTTTGATCAATGGTTCCTAACCTGTGGGTCA  200
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CCCTGGAGCTGTTAGATCC-TTTGATCAATGGTT-CTAACCTGTGGGTCA  187

seq1  TGACCCCTTTGGGGGGGATGGCAAACAACCCTTTCAGAAGAAGAAAAAGA  250
      ||||||  || |||||||||||||||||||||||||||||||||||||||
seq2  TGACCC--TTTGGGGGGATGGCAAACAACCCTTTCAGAAGAAGAAAAAGA  235

seq1  GACCGTTTCACATAATAATTTGGCTCAGTTACTTAGATTTTTCAACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTTTCACATAATAATTTGGCTCAGTTACTTAGATTTTTCAACAAGA  285

seq1  AAATTCTGTGAGGACAGGGACAAGATTGTCCAAAACAATTTTGAGATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTGAGGACAGGGACAAGATTGTCCAAAACAATTTTGAGATTAC  335

seq1  AGCTCTTGAATATTCACAACAATGGTAGGAAGATCACATTGAAGAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGAATATTCACAACAATGGTAGGAAGATCACATTGAAGAAGCAC  385

seq1  ACAGTAGACTGGAGAGATGGCTTTTCGTTAAAAGCAATGGTGTTCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGACTGGAGAGATGGCTTTTCGTTAAAAGCAATGGTGTTCTTCTG  435

seq1  TAGATCCTGGGTTCAATTCACAGCACCTACATAGCAGCACAAAACTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTGGGTTCAATTCACAGCACCTACATAGCAGCACAAAACTGTAT  485

seq1  ATAACTTTAGTCCTAGTACCGTGGGTCTCAGTAAATACCCTTTCATAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTAGTCCTAGTACCGTGGGTCTCAGTAAATACCCTTTCATAGGG  535

seq1  GATGCCTAAGATCATCAGAAAACACAGGTATTTACATTTTGATCCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTAAGATCATCAGAAAACACAGGTATTTACATTTTGATCCATAAA  585

seq1  AGTAGTAACAAAATAATTTTATGTTTGGGGGTTCTACCCACAATATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAACAAAATAATTTTATGTTTGGGGGTTCTACCCACAATATGAGG  635

seq1  AACTTTAATTTCCTATCTTTTTGTTTGTTTGTTTGTTTCTTTTTGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAATTTCCTATCTTTTTGTTTGTTTGTTTGTTTCTTTTTGAGACA  685

seq1  AGGTTTTTCTGGGTAGCCCTGGCTGTCCTAGAACTCACACTGTACACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTCTGGGTAGCCCTGGCTGTCCTAGAACTCACACTGTACACTAG  735

seq1  GGTGGCCTTGAATTCAGAGATCTGCCTTCCGAGGGCTACGATCAAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTTGAATTCAGAGATCTGCCTTCCGAGGGCTACGATCAAACACA  785

seq1  TATGCTGGCTATGAGGAGCTTTTTTACAGGGTCGTGGCATTTAGATTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGCTATGAGGAGCTTTTTTACAGGGTCGTGGCATTTAGATTGTG  835

seq1  TCATTGACTACTCACTTTGCATGTGTATTTCCAAGTAAACAATACAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGACTACTCACTTTGCATGTGTATTTCCAAGTAAACAATACAAGAT  885

seq1  TTATAATAGGTGAAAATCGCTTTTAACCTTTGCTCTAATTCTGTATTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAGGTGAAAATCGCTTTTAACCTTTGCTCTAATTCTGTATTAAT  935

seq1  TATATTTTCCCAGGTATTTAAAGTTTTTCCAAAACTACATTTCCAAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCCCAGGTATTTAAAGTTTTTCCAAAACTACATTTCCAAATGT  985

seq1  TATATTTATATAGATATGTATATGTGAATGTCTATAAGAGGACACACATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATATAGATATGTATATGTGAATGTCTATAAGAGGACACACATC  1035

seq1  ATATATTTGAATACACATGTGGTTAGATATATTAAATGCCATGCATACCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGAATACACATGTGGTTAGATATATTAAATGCCATGCATACCC  1085

seq1  TTAATCCTAGCACTCAGTAGGCAGAGGCAGGAGATCTCTGAGTTTGAGGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTAGCACTCAGTAGGCAGAGGCAGGAGATCTCTGAGTTTGAGGC  1135

seq1  CAGCCTGGTTTACACAGTGAATTC  1174
      ||||||||||||||||||||||||
seq2  CAGCCTGGTTTACACAGTGAATTC  1159

seq1: chr5_20466478_20467141
seq2: B6Ng01-009H04.g_68_731

seq1  GAATTCACAGAGGAGGGTGGCTATTACTATGATCTAAAGTTTAGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGGAGGGTGGCTATTACTATGATCTAAAGTTTAGAATATT  50

seq1  TTCTTTTATTAGGTATTTTCTTTATTTGCATTTCAAATGTTACCCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTAGGTATTTTCTTTATTTGCATTTCAAATGTTACCCCCTTC  100

seq1  CTAGCTTCCCCTCTGAAAATTCCTTATCCTTTCTCCCCTCCCCCTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCCCCTCTGAAAATTCCTTATCCTTTCTCCCCTCCCCCTAGAAT  150

seq1  AGTTTCAATTTCTTAGTTTGTAAGGGTCCAAGATTTGCCAAAGAATGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAATTTCTTAGTTTGTAAGGGTCCAAGATTTGCCAAAGAATGATA  200

seq1  CTCTGGACTCAAACAGTATATAAATGCAAAGAGTGTTTTATTCTGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACTCAAACAGTATATAAATGCAAAGAGTGTTTTATTCTGCAGAC  250

seq1  GCCCAGCATGCTGGAACCTCCCATTACCAAGATGAGAGACAACCAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCATGCTGGAACCTCCCATTACCAAGATGAGAGACAACCAAGTGA  300

seq1  GCTCGCAGGCCTGATTTAAAGCACATTAGGGGATTTTAGGGTAGGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCAGGCCTGATTTAAAGCACATTAGGGGATTTTAGGGTAGGTGACA  350

seq1  TTTACCTTGCTCAATTTCTAGGGACATTCCATTACCAGGGTGTAGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGCTCAATTTCTAGGGACATTCCATTACCAGGGTGTAGAGGCT  400

seq1  GGAAACTGCTGCGGATCCACTATCCTTGCCTCAGGCCAGGTAGCAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGCTGCGGATCCACTATCCTTGCCTCAGGCCAGGTAGCAGGCAG  450

seq1  CTTCTGAGGCCTGGATTTGCCTGGACTTGCCCAGTTCTTGGAAATAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGCCTGGATTTGCCTGGACTTGCCCAGTTCTTGGAAATAGACA  500

seq1  TTTAGGCCTCACCTCCTGAACTGCCAATTTGAAGCCTGTCAATGGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCTCACCTCCTGAACTGCCAATTTGAAGCCTGTCAATGGAGTCA  550

seq1  GCCTAGCCTTCTCAGTTACTGCTCTATTTCTGTGAAGAGACACATGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCTTCTCAGTTACTGCTCTATTTCTGTGAAGAGACACATGACCA  600

seq1  AGGCAACTCTTTTTTTTTTTTAAAGATTTATTTATTATTATGTCTAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCTTTTTTTTTTTTAAAGATTTATTTATTATTATGTCTAAGTG  650

seq1  CTGTCTTCAGATGC  664
      ||||||||||||||
seq2  CTGTCTTCAGATGC  664