BAC Information

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BAC

Clone NameB6Ng01-010E05
Chromosome5 (Build37)
Map Location 86,373,701 - 86,457,364
singlet/doubletdoublet
Overlap geneCenpc1
Upstream genenone
Downstream geneLOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010E05.bB6Ng01-010E05.g
ACCDH845981DH845982
length1,021966
definitionDH845981|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E05, 5' end.DH845982|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,456,791 - 86,457,364)(86,373,701 - 86,374,666)
sequence
gaattcactttatacaaattatttcagataacagcatgctttatttttcc
tttacttaacaagtatttaatttccaacagtaactggtcttttttgtttt
tgctagatgagttgaaagaccatttcttttctcccttctttctgtctttg
gccgtttcaaaaatgtgccatgctttctccttcaaacgcttgggtaccct
gtgacatttatacatctcttctcctttaggactagatgtgtatcatctca
gtagtatagagtgttcctttagcagaaagattatacactttccccaaagg
cctatgctctggctcttggctattttagtagtgtcaggtttggatatcat
ctcatggaatgaaccttaaatccagtcaaaaagtggttggttactctcat
aacatttttgccactattgtgccagtatatgcactaatcaggttgctgtt
gtaggtttctggatttgtagctgggtggtattcctgacaacttttctctg
gtagcatgaaaagaacctctcagcaccatgatgctcagtagtagaggtga
agctctagttcataatcagcttaatttctctgtgtttgatgacataagga
agttgtgtattcagtaatagggccttacttactgaggctgaagagagtaa
ccagtagcattgaccataacttggcagtgtttgggagtttgggcaggtta
tgggactcccgtggccagtgactcaacaagaggtaacctattcctagcgc
tggcctgtttagttggtgccatatgatgtttcccccattatatgatgact
ccatttaaagtcttttattttcacgtatgtagtttaagaagcttataaat
ggtaggtttccctatggcttttcaaaatgctgtagatgttcatctaaaat
ttccttcccccatttaatcttcttagtctaatttccctttatctctttat
acccatattctgtaccattcctgggagagccctctccctggtccttacta
atattaactcgtagttatttg
gaattccactgatctatctctccaggtcattaaatctatacatgtttgat
gggcaataaaagagaactttggaatgataatggcagctgtaggaagctgt
ggctctcctttacccaccagaaatgacaggaaatgatccatgtatttttt
taaatatgtatatattctattcattattactaatttcaaatgtctctgca
tatttcacaggcaactggttcataaataaaaagaaaaaagctgagatctc
agcattaacttctccccagtaggaacatgatatttagtttaattatacaa
gcagatgtaaggttgtgctctaactagggaaggttttgaatgagcttgtg
gggcacaggctaagcacaagtacatttctgttctcctccttttgtgattt
tgtgcatggatgttaccttgtgtggataagtgtccaagcgtaaggataac
caagttctagttcaagactcagatcgagtctagaccgtaaagctaaaagc
aaagtagtcactcataccataagataggccacaagcactttagatatttt
cctcctattcctcactttgcaagtaaattatttaaacacaaaccatatat
cataaaaatggatatatgatatctggtttatctaaagtatctaatgttta
aaattagccaattctgtcataagcaacttgcagtaaactttggattatta
agtgtttgagactttgtaaggtaaggggggttctcttttcttcaacccct
aggtttgggggtgagattcttatttttaaaaaatatgtattagcagtgaa
aaagtggtgggtgcatgtctttaattctagcactcaggaggcaaaggcat
gataatctggtctacaaaatgagttccaaacaagcaaagttctctgttac
acagagaaacactgtctcaaaggactaatcaggaaaaaagaaaagacaga
agacagaagaaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86456791_86457364
seq2: B6Ng01-010E05.b_45_618 (reverse)

seq1  TTAAGCTGATTATGAACTAGAGCTTCACCTCTACTACTGAGCATCATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGATTATGAACTAGAGCTTCACCTCTACTACTGAGCATCATGGT  50

seq1  GCTGAGAGGTTCTTTTCATGCTACCAGAGAAAAGTTGTCAGGAATACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGGTTCTTTTCATGCTACCAGAGAAAAGTTGTCAGGAATACCAC  100

seq1  CCAGCTACAAATCCAGAAACCTACAACAGCAACCTGATTAGTGCATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACAAATCCAGAAACCTACAACAGCAACCTGATTAGTGCATATAC  150

seq1  TGGCACAATAGTGGCAAAAATGTTATGAGAGTAACCAACCACTTTTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATAGTGGCAAAAATGTTATGAGAGTAACCAACCACTTTTTGAC  200

seq1  TGGATTTAAGGTTCATTCCATGAGATGATATCCAAACCTGACACTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAAGGTTCATTCCATGAGATGATATCCAAACCTGACACTACTAA  250

seq1  AATAGCCAAGAGCCAGAGCATAGGCCTTTGGGGAAAGTGTATAATCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAAGAGCCAGAGCATAGGCCTTTGGGGAAAGTGTATAATCTTTC  300

seq1  TGCTAAAGGAACACTCTATACTACTGAGATGATACACATCTAGTCCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGGAACACTCTATACTACTGAGATGATACACATCTAGTCCTAAA  350

seq1  GGAGAAGAGATGTATAAATGTCACAGGGTACCCAAGCGTTTGAAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGATGTATAAATGTCACAGGGTACCCAAGCGTTTGAAGGAGAA  400

seq1  AGCATGGCACATTTTTGAAACGGCCAAAGACAGAAAGAAGGGAGAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCACATTTTTGAAACGGCCAAAGACAGAAAGAAGGGAGAAAAGA  450

seq1  AATGGTCTTTCAACTCATCTAGCAAAAACAAAAAAGACCAGTTACTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTTTCAACTCATCTAGCAAAAACAAAAAAGACCAGTTACTGTTG  500

seq1  GAAATTAAATACTTGTTAAGTAAAGGAAAAATAAAGCATGCTGTTATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAATACTTGTTAAGTAAAGGAAAAATAAAGCATGCTGTTATCTG  550

seq1  AAATAATTTGTATAAAGTGAATTC  574
      ||||||||||||||||||||||||
seq2  AAATAATTTGTATAAAGTGAATTC  574

seq1: chr5_86373701_86374666
seq2: B6Ng01-010E05.g_66_1027

seq1  GAATTCCACTGATCTATCTCTCCAGGTCATTAAATCTATACATGTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGATCTATCTCTCCAGGTCATTAAATCTATACATGTTTGAT  50

seq1  GGGCAATAAAAGAGAACTTTGGAATGATAATGGCAGCTGTAGGAAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATAAAAGAGAACTTTGGAATGATAATGGCAGCTGTAGGAAGCTGT  100

seq1  GGCTCTCCTTTACCCACCAGAAATGACAGGAAATGATCCATGTATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCTTTACCCACCAGAAATGACAGGAAATGATCCATGTATTTTTT  150

seq1  TAAATATGTATATATTCTATTCATTATTACTAATTTCAAATGTCTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTATATATTCTATTCATTATTACTAATTTCAAATGTCTCTGCA  200

seq1  TATTTCACAGGCAACTGGTTCATAAATAAAAAGAAAAAAGCTGAGATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACAGGCAACTGGTTCATAAATAAAAAGAAAAAAGCTGAGATCTC  250

seq1  AGCATTAACTTCTCCCCAGTAGGAACATGATATTTAGTTTAATTATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAACTTCTCCCCAGTAGGAACATGATATTTAGTTTAATTATACAA  300

seq1  GCAGATGTAAGGTTGTGCTCTAACTAGGGAAGGTTTTGAATGAGCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTAAGGTTGTGCTCTAACTAGGGAAGGTTTTGAATGAGCTTGTG  350

seq1  GGGCACAGGCTAAGCACAAGTACATTTCTGTTCTCCTCCTTTTGTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGGCTAAGCACAAGTACATTTCTGTTCTCCTCCTTTTGTGATTT  400

seq1  TGTGCATGGATGTTACCTTGTGTGGATAAGTGTCCAAGCGTAAGGATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGGATGTTACCTTGTGTGGATAAGTGTCCAAGCGTAAGGATAAC  450

seq1  CAAGTTCTAGTTCAAGACTCAGATCGAGTCTAGACCGTAAAGCTAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTAGTTCAAGACTCAGATCGAGTCTAGACCGTAAAGCTAAAAGC  500

seq1  AAAGTAGTCACTCATACCATAAGATAGGCCACAAGCACTTTAGATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTCACTCATACCATAAGATAGGCCACAAGCACTTTAGATATTTT  550

seq1  CCTCCTATTCCTCACTTTGCAAGTAAATTATTTAAACACAAACCATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATTCCTCACTTTGCAAGTAAATTATTTAAACACAAACCATATAT  600

seq1  CATAAAAATGGATATATGATATCTGGTTTATCTAAAGTATCTAATGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAATGGATATATGATATCTGGTTTATCTAAAGTATCTAATGTTTA  650

seq1  AAATTAGCCAATTCTGTCATAAGCAACTTGCAGTAAACTTTGGATTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCAATTCTGTCATAAGCAACTTGCAGTAAACTTTGGATTATTA  700

seq1  AGTGTTTGAGACTTTGTAAGGTAAGGGGGGTTCTCTTTTCTTCAACCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGAGACTTTGTAAGGTAAGGGGGGTTCTCTTTTCTTCAACCCCT  750

seq1  AGGTTTGGGGGTGAGATTCTTATTTTTAAAAAAATATGTATTAGCAGTGA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGTTTGGGGGTGAGATTCTTATTTTT-AAAAAATATGTATTAGCAGTGA  799

seq1  AAAAGTGGT-GGTGCATGTCTTTAATTCTAGCACTCAGGAGGCAAAGGCA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGTGGGTGCATGTCTTTAATTCTAGCACTCAGGAGGCAAAGGCA  849

seq1  TGATAATCTGGTCTACAAAATGAGTTCCAAACAAGCAAAGTTCTCTGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCTGGTCTACAAAATGAGTTCCAAACAAGCAAAGTTCTCTGTTA  899

seq1  CACAGAGAAACACTGTCTCAAAAGGACAAATCAAGGAAAAAAAGAAAAGA  949
      ||||||||||||||||||| ||||||| |||||  | |||||||||||||
seq2  CACAGAGAAACACTGTCTC-AAAGGACTAATCA--GGAAAAAAGAAAAGA  946

seq1  CAGAAAGACAGAAGAAA  966
      ||| |||||||||||||
seq2  CAG-AAGACAGAAGAAA  962