BAC Information

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BAC

Clone NameB6Ng01-010I20
Chromosome5 (Build37)
Map Location 66,858,167 - 67,020,696
singlet/doubletdoublet
Overlap geneApbb2
Upstream gene1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7
Downstream geneUchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010I20.bB6Ng01-010I20.g
ACCDH846189DH846190
length1,0741,012
definitionDH846189|Mus musculus domesticus DNA, BAC clone: B6Ng01-010I20, 5' end.DH846190|Mus musculus domesticus DNA, BAC clone: B6Ng01-010I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,858,167 - 66,859,251)(67,019,731 - 67,020,696)
sequence
gaattcttctttacctgttccccctcccccaaatacagacaaacaggtct
gatctttcccctctgaactcactctgttgtctctcctgtccactcacttc
aaacactgctagggtttagatacaaactgtgttccccaagtgtccatcca
agccttgatcatcaggttggaaccgctggtaggtagtggatcctttgggt
aatggaatctagtggaaattctttaattgctgaaagtatttctctgttct
ggttaggtttttgtttgtatcaatttgacacaagctagagtcatttggaa
agatggactctcagctgagaaactgaccacagcattgattatcattaatc
aatgattgatgtgggagctcagatcactgtgggtggtgccaaccctaggc
aaatggtcctggagtataagaaggcaggctgagcaagccatgagagcaag
ctaataggtagcattcttccatggcctctgcttcagttcttgccttgagt
tactatccctcggtgatggacttttaagaggaaataaactcttcatttct
caagttgcttttggttatagtgtttaaccaccaaaatagaaacattatcc
taagacattattctataaccttttggtacttctagctagagggtaattat
agaagcctgagcctggcccctgaccagttatctctctgcttctggtttaa
aatgtaaccacttggatattcccacaaccactctccccactgctagccac
tgtaatgggactttgttagttttctgcccctgtaacaaaatacttgagac
atttaacctataaacaagaaaggcctgttttgactcatggtttcttactt
ttcaattcagacctgttttccctcatgctttgggacctatggcaaggcag
acacaggactgatgtgtagtggagtaaactgctcacttgcggcaaggatg
gtgacagaagagactggagaactacagcccttctgaaagcacaaagtgaa
taaaatctcccactaagccttcctttcaacattccaagggcttggtacca
ggaccaggggcatccaggattaaa
gaattcagttttaagattctcagttatttctggcaaaattgatattctct
ctttctctctctctctgtgtctctgtgtctctgtctgtctgtctgtctct
ctgtgtgtgtgtctctgtctctctgtctctctgtgtctctgtgtctgtgc
ctctgtctctctctgtgtctctgtgtctctgtctctgtctgtctgtctct
gtgtgtgtatctctgtctctgtctctctgtgtctctgtctctctgtctct
gtgtctctgtgtctctgtctctctctgtctctctgtctctctgtctctgt
ctctctctctctctctctcgtctcatatagcccacatggaatccattgtg
caggtgaggatatccttgtgatcatttggcctccacctcctgagtattgg
gattacactgtgagctactgcttccagtttaaggggtgccagggattgag
ctcaggacctcatgcatgctaggtcctcgctctagcaatgagctgagtcc
ccatcttcagaagctagcctccatttaacccagaagtgaatgcttaccac
taatgatctctctctctctcaaaaatatttactgatatttttattttatg
tgtttgtgttcatgcctagtgctagaggaggtcagaagagggcattggat
cccccagaactggagttatacggtaacctcgtggtggttgtgaaccacca
tgtggatggatattgagttccaaacactggtcctgtgcaagagcatccag
tgctcttaagtgctgagccatctctttagctccagtctcttaaaaaacaa
acaaacgaacgaacagcaagggagctgggtatgacaacacatactataat
tctagtactcagatgctgaaacaggaggattgcctgactgggagatataa
ggagatctgttgtcaccctccatctcctccccataaaggcagaataaaag
acgtctataacaataaacaacaactcaataaacaaatcagatctcttcac
ctttcttgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66858167_66859251
seq2: B6Ng01-010I20.b_44_1117

seq1  GAATTCTTCTTTACCTGTTCCCCCTCCCCCAAATACAGACAAACAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTACCTGTTCCCCCTCCCCCAAATACAGACAAACAGGTCT  50

seq1  GATCTTTCCCCTCTGAACTCACTCTGTTGTCTCTCCTGTCCACTCACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCCCCTCTGAACTCACTCTGTTGTCTCTCCTGTCCACTCACTTC  100

seq1  AAACACTGCTAGGGTTTAGATACAAACTGTGTTCCCCAAGTGTCCATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGCTAGGGTTTAGATACAAACTGTGTTCCCCAAGTGTCCATCCA  150

seq1  AGCCTTGATCATCAGGTTGGAACCGCTGGTAGGTAGTGGATCCTTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGATCATCAGGTTGGAACCGCTGGTAGGTAGTGGATCCTTTGGGT  200

seq1  AATGGAATCTAGTGGAAATTCTTTAATTGCTGAAAGTATTTCTCTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATCTAGTGGAAATTCTTTAATTGCTGAAAGTATTTCTCTGTTCT  250

seq1  GGTTAGGTTTTTGTTTGTATCAATTTGACACAAGCTAGAGTCATTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGTTTTTGTTTGTATCAATTTGACACAAGCTAGAGTCATTTGGAA  300

seq1  AGATGGACTCTCAGCTGAGAAACTGACCACAGCATTGATTATCATTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTCTCAGCTGAGAAACTGACCACAGCATTGATTATCATTAATC  350

seq1  AATGATTGATGTGGGAGCTCAGATCACTGTGGGTGGTGCCAACCCTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGATGTGGGAGCTCAGATCACTGTGGGTGGTGCCAACCCTAGGC  400

seq1  AAATGGTCCTGGAGTATAAGAAGGCAGGCTGAGCAAGCCATGAGAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCCTGGAGTATAAGAAGGCAGGCTGAGCAAGCCATGAGAGCAAG  450

seq1  CTAATAGGTAGCATTCTTCCATGGCCTCTGCTTCAGTTCTTGCCTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGGTAGCATTCTTCCATGGCCTCTGCTTCAGTTCTTGCCTTGAGT  500

seq1  TACTATCCCTCGGTGATGGACTTTTAAGAGGAAATAAACTCTTCATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCCCTCGGTGATGGACTTTTAAGAGGAAATAAACTCTTCATTTCT  550

seq1  CAAGTTGCTTTTGGTTATAGTGTTTAACCACCAAAATAGAAACATTATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGCTTTTGGTTATAGTGTTTAACCACCAAAATAGAAACATTATCC  600

seq1  TAAGACATTATTCTATAACCTTTTGGTACTTCTAGCTAGAGGGTAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACATTATTCTATAACCTTTTGGTACTTCTAGCTAGAGGGTAATTAT  650

seq1  AGAAGCCTGAGCCTGGCCCCTGACCAGTTATCTCTCTGCTTCTGGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTGAGCCTGGCCCCTGACCAGTTATCTCTCTGCTTCTGGTTTAA  700

seq1  AATGTAACCACTTGGATATTCCCACAACCACTCTCCCCACTGCTAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACCACTTGGATATTCCCACAACCACTCTCCCCACTGCTAGCCAC  750

seq1  TGTAATGGGACTTTGTTAGTTTTCTGCCCCTGTAACAAAATACTTGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGGACTTTGTTAGTTTTCTGCCCCTGTAACAAAATACTTGAGAC  800

seq1  ATTTAACCTATAAACAAGAAAGGCCTGTTTTGACTCATGGTTTCTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCTATAAACAAGAAAGGCCTGTTTTGACTCATGGTTTCTTACTT  850

seq1  TTCAATTCAGACCTGTTTTCCCTCATGCTTTGGGACCTATGGCAAGGCAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCAATTCAGACCTGTTTTCCCTCATGCTTTGGGACCTATGGCAAGGC-A  899

seq1  GACAACAGGACTGATGTGTAGTGGAGTAAAACTGCTCACCTTGCGGCAAG  950
      ||| ||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GAC-ACAGGACTGATGTGTAGTGGAGT-AAACTGCTCA-CTTGCGGCAAG  946

seq1  GATGGTGACAGAAGAGACTGGAGAACTACAAGCCCCTCTGAGAGCACAAA  1000
      ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
seq2  GATGGTGACAGAAGAGACTGGAGAACTAC-AGCCCTTCTGAAAGCAC-AA  994

seq1  AGTGAATAAAATCTCCCACTAAGCCCTCACTTCCAAACATCCCAAGGGCT  1050
      ||||||||||||||||||||||||| ||  |||  ||||| |||||||||
seq2  AGTGAATAAAATCTCCCACTAAGCCTTCCTTTC--AACATTCCAAGGGCT  1042

seq1  TGGTACCAAGGAACCAGGGGCCATTCGAGATTAAA  1085
      ||||||||  | |||||||| ||| |  |||||||
seq2  TGGTACCA--GGACCAGGGG-CATCCAGGATTAAA  1074

seq1: chr5_67019731_67020696
seq2: B6Ng01-010I20.g_121_1076 (reverse)

seq1  AAAGCAAAGAAAAGGTGGAGAGATCTTGGTTTTGTTTTATTGGGTTGTTT  50
      |||||||   ||||||| ||||||||  | |||| ||||||| |||| ||
seq2  AAAGCAA--GAAAGGTGAAGAGATCT--GATTTG-TTTATTGAGTTG-TT  44

seq1  GTTTATTTGTTTATAGGACGTTCTTTTATTCTGCCTTTATGGGGAGG-GG  99
      |||||||   ||||| |||| |||||||||||||||||||||||||| | 
seq2  GTTTATT--GTTATA-GACG-TCTTTTATTCTGCCTTTATGGGGAGGAGA  90

seq1  TGG-GGGTGACAACAGATTCTCCTTATATCTCCCAGTCAGGCAATCCTCC  148
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGAGGGTGACAACAGA-TCTCCTTATATCTCCCAGTCAGGCAATCCTCC  139

seq1  TGTTTCAGCATCCTGAGTACTAGAATTATAGTATGTGTTGTCATACCCAG  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGCAT-CTGAGTACTAGAATTATAGTATGTGTTGTCATACCCAG  188

seq1  CTCCCTTGCTGTTCGTTCGTTTGTTTGTTTTTTAAGAGACTGGAGCTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGCTGTTCGTTCGTTTGTTTGTTTTTTAAGAGACTGGAGCTAAA  238

seq1  GAGATGGCTCAGCACTTAAGAGCACTGGATGCTCTTGCACAGGACCAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCACTTAAGAGCACTGGATGCTCTTGCACAGGACCAGTG  288

seq1  TTTGGAACTCAATATCCATCCACATGGTGGTTCACAACCACCACGAGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACTCAATATCCATCCACATGGTGGTTCACAACCACCACGAGGTT  338

seq1  ACCGTATAACTCCAGTTCTGGGGGATCCAATGCCCTCTTCTGACCTCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATAACTCCAGTTCTGGGGGATCCAATGCCCTCTTCTGACCTCCTC  388

seq1  TAGCACTAGGCATGAACACAAACACATAAAATAAAAATATCAGTAAATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTAGGCATGAACACAAACACATAAAATAAAAATATCAGTAAATAT  438

seq1  TTTTGAGAGAGAGAGAGATCATTAGTGGTAAGCATTCACTTCTGGGTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAGAGAGAGAGATCATTAGTGGTAAGCATTCACTTCTGGGTTAA  488

seq1  ATGGAGGCTAGCTTCTGAAGATGGGGACTCAGCTCATTGCTAGAGCGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCTAGCTTCTGAAGATGGGGACTCAGCTCATTGCTAGAGCGAGG  538

seq1  ACCTAGCATGCATGAGGTCCTGAGCTCAATCCCTGGCACCCCTTAAACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCATGCATGAGGTCCTGAGCTCAATCCCTGGCACCCCTTAAACTG  588

seq1  GAAGCAGTAGCTCACAGTGTAATCCCAATACTCAGGAGGTGGAGGCCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTAGCTCACAGTGTAATCCCAATACTCAGGAGGTGGAGGCCAAA  638

seq1  TGATCACAAGGATATCCTCACCTGCACAATGGATTCCATGTGGGCTATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAAGGATATCCTCACCTGCACAATGGATTCCATGTGGGCTATAT  688

seq1  GAGACGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGACAGAGAGACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGACAGAGAGACAG  738

seq1  AGAGAGACAGAGACACAGAGACACAGAGACAGAGAGACAGAGACACAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGACACAGAGACACAGAGACAGAGAGACAGAGACACAGAG  788

seq1  AGACAGAGACAGAGATACACACACAGAGACAGACAGACAGAGACAGAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGAGATACACACACAGAGACAGACAGACAGAGACAGAGAC  838

seq1  ACAGAGACACAGAGAGAGACAGAGGCACAGACACAGAGACACAGAGAGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACAGAGAGAGACAGAGGCACAGACACAGAGACACAGAGAGAC  888

seq1  AGAGAGACAGAGACACACACACAGAGAGACAGACAGACAGACAGAGACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGACACACACACAGAGAGACAGACAGACAGACAGAGACAC  938

seq1  AGAGACACAGAGAGAGAG  966
      ||||||||||||||||||
seq2  AGAGACACAGAGAGAGAG  956