BAC Information

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BAC

Clone NameB6Ng01-010P10
Chromosome5 (Build37)
Map Location 44,765,667 - 44,894,599
singlet/doubletdoublet
Overlap geneLOC545747, Ldb2
Upstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717
Downstream geneLOC100041481, LOC100040737, Qdpr, EG624224, Lap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P10.bB6Ng01-010P10.g
ACCDH846482DH846483
length655844
definitionDH846482|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P10, 5' end.DH846483|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,765,667 - 44,766,320)(44,893,758 - 44,894,599)
sequence
gaattcactgttacagcaatacttaaagtttacagccttttataattccc
acccaatcatgtctctctttaaacttttcatagacctttctctaactgga
tccatagcacaattctttcttttctctttttttcccacttaattttagtt
tatctgtgtgtatgtgtatgtgtgttgtgtataggtttgagatcatcttc
agatcctgttcttcaggtaccatctacttttttttgaaacagaatctctc
acaggcctgaaattcactgattacaccagatttctgctttagttggggct
ttattgctcagaaaagacaccatgactatggcaacttttataaaggatgt
aattttcttggggaatggcttatagtttcagaggtttagtccattattgt
tccagtgggaagcatggcaacatgcaggcagatctgatgctggagaaaga
gctgagaattttatatcttgatctgaaaggagagactgtgagccatattg
aatatagcaggagcataggagacctaagagctacctccacagtgacacat
tttctccagaaaggccttacatacttcaagaaggccatacctcctaatag
tgtcactgcctatgtccaaagcattcaaactcatgagttatgggagccca
tattt
gaattctttcctccctctagcctactcagagcctttttcctttattcact
taaatcactctagaaagatctgttcctggcctgttctcctttgtaggcat
tttgtacttcatagctttattgctttgtctttctgaagtatgtcaacatc
caagatgccctgtagagtagagcatttgtttgtttggcctgtcactgtct
tctgacaactcctccatatccacttggcatgtgataggtattgggtgttg
tttgcttaatgagtgaagaattaagctaccaacaatctctctctgtcccc
taacccagtcatggctaagagctgttcatggatttgctaccataaactgg
tcagctcgagaacagaaagattaacaccattcctatcagaaaaatccaag
aacaaaaacagctggccagtggttggagcacacttttaatcctagcaaaa
ccatgtagatctcttgagtttgaggccagcctggtctacagaatgagttt
cagcacagccaagagtttctcagggcctggggaggagaggggatacaggg
agttaggggaacccatgtgtggacagagaagctcttgctgtcattgcaga
tcatattggaaaaagcctaatttcttgagacaagcttccccacagtggct
tcccagcttctgaagcaccagctctcagctggcacacatcagccttgggc
tgtatcaccagcaatagcccagttgtgtgtcacttgctttttatcttgtg
gctcaagtgagatgtaggatcatgcttgtgggagatttctccttctgtga
ctttcttttctatgcttcttgtgtgagggggggcggggggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44765667_44766320
seq2: B6Ng01-010P10.b_45_699

seq1  GAATTCACTGTTACAGCAATACTTAAAGTTTACAGCCTTTTATAATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTACAGCAATACTTAAAGTTTACAGCCTTTTATAATTCCC  50

seq1  ACCCAATCATGTCTCTCTTTAAACTTTTCATAGACCTTTCTCTAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATCATGTCTCTCTTTAAACTTTTCATAGACCTTTCTCTAACTGGA  100

seq1  TCCATAGCACAATTCTTTCTTTTCTCTTTTTTTCCCACTTAATTTTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCACAATTCTTTCTTTTCTCTTTTTTTCCCACTTAATTTTAGTT  150

seq1  TATCTGTGTGTATGTGTATGTGTGTTGTGTATAGGTTTGAGATCATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTGTATGTGTATGTGTGTTGTGTATAGGTTTGAGATCATCTTC  200

seq1  AGATCCTGTTCTTCAGGTACCATCTACTTTTTTTTGAAACAGAATCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGTTCTTCAGGTACCATCTACTTTTTTTTGAAACAGAATCTCTC  250

seq1  ACAGGCCTGAAATTCACTGATTACACCAGATTTCTGCTTTAGTTGGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGAAATTCACTGATTACACCAGATTTCTGCTTTAGTTGGGGCT  300

seq1  TTATTGCTCAGAAAAGACACCATGACTATGGCAACTTTTATAAAGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCTCAGAAAAGACACCATGACTATGGCAACTTTTATAAAGGATGT  350

seq1  AATTTTCTTGGGGAATGGCTTATAGTTTCAGAGGTTTAGTCCATTATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTGGGGAATGGCTTATAGTTTCAGAGGTTTAGTCCATTATTGT  400

seq1  TCCAGTGGGAAGCATGGCAACATGCAGGCAGATCTGATGCTGGAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGGAAGCATGGCAACATGCAGGCAGATCTGATGCTGGAGAAAGA  450

seq1  GCTGAGAATTTTATATCTTGATCTGAAAGGAGAGACTGTGAGCCATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATTTTATATCTTGATCTGAAAGGAGAGACTGTGAGCCATATTG  500

seq1  AATATAGCAGGAGCATAGGAGACCTAAGAGCTACCTCCACAGTGACACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGCAGGAGCATAGGAGACCTAAGAGCTACCTCCACAGTGACACAT  550

seq1  TTTCTCCAGAAAGGCCTTACATACTTCAAGAAGGCCATACCTCCTAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAGAAAGGCCTTACATACTTCAAGAAGGCCATACCTCCTAATAG  600

seq1  TGTCACTGCCTATGGTCCAAGCATTCAAACTCATGAGTTATGGGAG-CCA  649
      ||||||||||||||  | |||||||||||||||||||||||||||| |||
seq2  TGTCACTGCCTATGTCCAAAGCATTCAAACTCATGAGTTATGGGAGCCCA  650

seq1  TATTT  654
      |||||
seq2  TATTT  655

seq1: chr5_44893758_44894599
seq2: B6Ng01-010P10.g_63_906 (reverse)

seq1  -AACCCCCCCG-CCCCCCTCACACAAGAAAGCATAG-AAAGAAAGTCACA  47
       | |||||||| ||||||||||||||| |||||||| |||||||||||||
seq2  AACCCCCCCCGCCCCCCCTCACACAAG-AAGCATAGAAAAGAAAGTCACA  49

seq1  GAAGGAGAAATCTCCCACAAGCATGATCCTACATCTCACTTGAGCCACAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAAATCTCCCACAAGCATGATCCTACATCTCACTTGAGCCACAA  99

seq1  GATAAAAAGCAAGTGACACACAACTGGGCTATTGCTGGTGATACAGCCCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAGCAAGTGACACACAACTGGGCTATTGCTGGTGATACAGCCCA  149

seq1  AGGCTGATGTGTGCCAGCTGAGAGCTGGTGCTTCAGAAGCTGGGAAGCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATGTGTGCCAGCTGAGAGCTGGTGCTTCAGAAGCTGGGAAGCCA  199

seq1  CTGTGGGGAAGCTTGTCTCAAGAAATTAGGCTTTTTCCAATATGATCTGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGAAGCTTGTCTCAAGAAATTAGGCTTTTTCCAATATGATCTGC  249

seq1  AATGACAGCAAGAGCTTCTCTGTCCACACATGGGTTCCCCTAACTCCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGCAAGAGCTTCTCTGTCCACACATGGGTTCCCCTAACTCCCTG  299

seq1  TATCCCCTCTCCTCCCCAGGCCCTGAGAAACTCTTGGCTGTGCTGAAACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCTCTCCTCCCCAGGCCCTGAGAAACTCTTGGCTGTGCTGAAACT  349

seq1  CATTCTGTAGACCAGGCTGGCCTCAAACTCAAGAGATCTACATGGTTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTAGACCAGGCTGGCCTCAAACTCAAGAGATCTACATGGTTTTG  399

seq1  CTAGGATTAAAAGTGTGCTCCAACCACTGGCCAGCTGTTTTTGTTCTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTAAAAGTGTGCTCCAACCACTGGCCAGCTGTTTTTGTTCTTGG  449

seq1  ATTTTTCTGATAGGAATGGTGTTAATCTTTCTGTTCTCGAGCTGACCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGATAGGAATGGTGTTAATCTTTCTGTTCTCGAGCTGACCAGT  499

seq1  TTATGGTAGCAAATCCATGAACAGCTCTTAGCCATGACTGGGTTAGGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAGCAAATCCATGAACAGCTCTTAGCCATGACTGGGTTAGGGGA  549

seq1  CAGAGAGAGATTGTTGGTAGCTTAATTCTTCACTCATTAAGCAAACAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGATTGTTGGTAGCTTAATTCTTCACTCATTAAGCAAACAACA  599

seq1  CCCAATACCTATCACATGCCAAGTGGATATGGAGGAGTTGTCAGAAGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACCTATCACATGCCAAGTGGATATGGAGGAGTTGTCAGAAGACA  649

seq1  GTGACAGGCCAAACAAACAAATGCTCTACTCTACAGGGCATCTTGGATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGGCCAAACAAACAAATGCTCTACTCTACAGGGCATCTTGGATGT  699

seq1  TGACATACTTCAGAAAGACAAAGCAATAAAGCTATGAAGTACAAAATGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACTTCAGAAAGACAAAGCAATAAAGCTATGAAGTACAAAATGCC  749

seq1  TACAAAGGAGAACAGGCCAGGAACAGATCTTTCTAGAGTGATTTAAGTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGAGAACAGGCCAGGAACAGATCTTTCTAGAGTGATTTAAGTGA  799

seq1  ATAAAGGAAAAAGGCTCTGAGTAGGCTAGAGGGAGGAAAGAATTC  842
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAAAAAGGCTCTGAGTAGGCTAGAGGGAGGAAAGAATTC  844