BAC Information

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BAC

Clone NameB6Ng01-011A12
Chromosome5 (Build37)
Map Location 22,972,327 - 23,123,509
singlet/doubletdoublet
Overlap geneSrpk2
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A12.bB6Ng01-011A12.g
ACCDH846528DH846529
length9511,087
definitionDH846528|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A12, 5' end.DH846529|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,122,560 - 23,123,509)(22,972,327 - 22,973,422)
sequence
gaattctcaaggtaagttttattattatagcagtttggctaattttatta
tatctatgggatgaggatatatgcttaaattaggagaatcccttaacact
gggaaagtattttcctacttttattttttaatttttccttatatttttca
tattttaattttattaatgtagtcagcattttaaaacattgttttatttc
taggaaatacacacttatgtgtgcatgcttatcctctcccactttattga
ggtctgctttgaaattctgagaccttatagcttttcaatgattacagttt
taattttagtatgtggactttttattataaacagatactgtaattaaaga
aatatagttagaatactttttaggactagacaaaacagcgtttcccacga
agtaagaacccggggctttactcagcagagattgccagccctggctgagt
tgctggtgtggttaaaggcagtttgctctatttcccgtggctttgccttg
gctgcgctcttctaactcttccctgtaaggtcttctcttacccagcttgg
ttccagcaaccatcttttaattaaattgaagttgcagttacatttctgat
gtaggtggcgttgccagtccttcctgaaaggacaagaatatctctcgtct
ctgctcggtgcctgggcactgcttgttcactgtgtgctgtgaaggaggag
gggaggctaagatgtagagaagtctcttcctgaaggtgttagggacggga
tgctaaatttcattaaaaacaatcaggaaattataacattttgatcattg
gaattggggttttggtttaatatttcattcttaagtgacagaaatgattc
actgagccatattttttaggacaaatcaatagaagcagccagggggttgc
atatctgtttcattgagaatgaaacattttaatttggcttctcaaattat
t
gaattcctttccagtggaatgccttttttgattctttgatgtatttggaa
ttggaattgctatacttctatttttaaatatgaaatgtctttctttgtta
ttctttttgtttccttagcattctcttaacactgtatgccaccaaaattg
ttaaatgttaacagaagatataacgcatcgttgctcctgttccctgcttt
cacagaaggaacagttctctctgtgtactgaccaccctttgctcgtcttc
tcctagctgatcgttggtcagttggttcaagggcacactttcttcctgtt
ttcccagattgttgtcaaactgattattatgtaagggctttagtatggat
atcttcaggtttttaataatattttaaacccttaccttttgtgtattaaa
ttgcatttgctttaggaatttagtttatgcactttgtagttgccctattt
ttgcatctcaacatttttctacctaaggacacatctagtgtgtgctaagc
ttaaattccttaaataataattcagtagaatattaagtcatagttaatgg
tttcagtgctttctgctctttttgttatattttgttttttctttttaagt
gtttggcaacatattgactgcatggggattgacaggcagcatattcctga
tacatacctatgtgaacgttgtcagcccaggtaagttattataccttata
aaactttcagttagctcactaaaattttttttcatcttctaagcatttgg
cattttctggcaacatcattagaatttggtatgatagtgcaggtttgtaa
tacaagccattggagctgctgaggcaggagtattgaaaagctcaaggttt
ggtaaaacagagtaagttcaagtctagtcgaggtaacttagacctcttcc
tcaaataaaagcagaaaaccttggaaggaatgtggtaaagtacctgtata
gtatcatactcaaggcactggatttaaacctgagttctcagaaaaagggt
tagggaatataccttacgtgatagaatgtgattacctgtgagaggctctg
attatcctcaggtttctctttttttccctcctcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23122560_23123509
seq2: B6Ng01-011A12.b_42_992 (reverse)

seq1  AATAATTTGAGAAGCCTAAATTAAAATGTTTCATTCTCAATG-AACAGAT  49
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AATAATTTGAGAAGCC-AAATTAAAATGTTTCATTCTCAATGAAACAGAT  49

seq1  ATGCAA-CCCCTGGCTGCTTCTATTTGATTTGTCCTAAAAAATATGGCTC  98
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGCAACCCCCTGGCTGCTTCTA-TTGATTTGTCCTAAAAAATATGGCTC  98

seq1  AGTGAATCATTTCTGTCACTTAAGAATGAAATATTAAACCAAAACCCCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCATTTCTGTCACTTAAGAATGAAATATTAAACCAAAACCCCAA  148

seq1  TT-CAATGATCAAAATGTTATAATTTCCTGATTGTTTTTAATGAAATTTA  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGATCAAAATGTTATAATTTCCTGATTGTTTTTAATGAAATTTA  198

seq1  GCATCCCGTCCCTAACACCTTCAGGAAGAGACTTCTCTACATCTTAGCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCGTCCCTAACACCTTCAGGAAGAGACTTCTCTACATCTTAGCCT  248

seq1  CCCCTCCTCCTTCACAGCACACAGTGAACAAGCAGTGCCCAGGCACCGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTCCTTCACAGCACACAGTGAACAAGCAGTGCCCAGGCACCGAG  298

seq1  CAGAGACGAGAGATATTCTTGTCCTTTCAGGAAGGACTGGCAACGCCACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGAGAGATATTCTTGTCCTTTCAGGAAGGACTGGCAACGCCACC  348

seq1  TACATCAGAAATGTAACTGCAACTTCAATTTAATTAAAAGATGGTTGCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGAAATGTAACTGCAACTTCAATTTAATTAAAAGATGGTTGCTG  398

seq1  GAACCAAGCTGGGTAAGAGAAGACCTTACAGGGAAGAGTTAGAAGAGCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGCTGGGTAAGAGAAGACCTTACAGGGAAGAGTTAGAAGAGCGC  448

seq1  AGCCAAGGCAAAGCCACGGGAAATAGAGCAAACTGCCTTTAACCACACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCAAAGCCACGGGAAATAGAGCAAACTGCCTTTAACCACACCA  498

seq1  GCAACTCAGCCAGGGCTGGCAATCTCTGCTGAGTAAAGCCCCGGGTTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCAGCCAGGGCTGGCAATCTCTGCTGAGTAAAGCCCCGGGTTCTT  548

seq1  ACTTCGTGGGAAACGCTGTTTTGTCTAGTCCTAAAAAGTATTCTAACTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGTGGGAAACGCTGTTTTGTCTAGTCCTAAAAAGTATTCTAACTAT  598

seq1  ATTTCTTTAATTACAGTATCTGTTTATAATAAAAAGTCCACATACTAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAATTACAGTATCTGTTTATAATAAAAAGTCCACATACTAAAA  648

seq1  TTAAAACTGTAATCATTGAAAAGCTATAAGGTCTCAGAATTTCAAAGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTGTAATCATTGAAAAGCTATAAGGTCTCAGAATTTCAAAGCAG  698

seq1  ACCTCAATAAAGTGGGAGAGGATAAGCATGCACACATAAGTGTGTATTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATAAAGTGGGAGAGGATAAGCATGCACACATAAGTGTGTATTTC  748

seq1  CTAGAAATAAAACAATGTTTTAAAATGCTGACTACATTAATAAAATTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATAAAACAATGTTTTAAAATGCTGACTACATTAATAAAATTAAA  798

seq1  ATATGAAAAATATAAGGAAAAATTAAAAAATAAAAGTAGGAAAATACTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAATATAAGGAAAAATTAAAAAATAAAAGTAGGAAAATACTTT  848

seq1  CCCAGTGTTAAGGGATTCTCCTAATTTAAGCATATATCCTCATCCCATAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTTAAGGGATTCTCCTAATTTAAGCATATATCCTCATCCCATAG  898

seq1  ATATAATAAAATTAGCCAAACTGCTATAATAATAAAACTTACCTTGAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAAATTAGCCAAACTGCTATAATAATAAAACTTACCTTGAGAA  948

seq1  TTC  950
      |||
seq2  TTC  951

seq1: chr5_22972327_22973422
seq2: B6Ng01-011A12.g_69_1155

seq1  GAATTCCTTTCCAGTGGAATGCCTTTTTTGATTCTTTGATGTATTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCAGTGGAATGCCTTTTTTGATTCTTTGATGTATTTGGAA  50

seq1  TTGGAATTGCTATACTTCTATTTTTAAATATGAAATGTCTTTCTTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTGCTATACTTCTATTTTTAAATATGAAATGTCTTTCTTTGTTA  100

seq1  TTCTTTTTGTTTCCTTAGCATTCTCTTAACACTGTATGCCACCAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTTTCCTTAGCATTCTCTTAACACTGTATGCCACCAAAATTG  150

seq1  TTAAATGTTAACAGAAGATATAACGCATCGTTGCTCCTGTTCCCTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTAACAGAAGATATAACGCATCGTTGCTCCTGTTCCCTGCTTT  200

seq1  CACAGAAGGAACAGTTCTCTCTGTGTACTGACCACCCTTTGCTCGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGGAACAGTTCTCTCTGTGTACTGACCACCCTTTGCTCGTCTTC  250

seq1  TCCTAGCTGATCGTTGGTCAGTTGGTTCAAGGGCACACTTTCTTCCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGATCGTTGGTCAGTTGGTTCAAGGGCACACTTTCTTCCTGTT  300

seq1  TTCCCAGATTGTTGTCAAACTGATTATTATGTAAGGGCTTTAGTATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATTGTTGTCAAACTGATTATTATGTAAGGGCTTTAGTATGGAT  350

seq1  ATCTTCAGGTTTTTAATAATATTTTAAACCCTTACCTTTTGTGTATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGTTTTTAATAATATTTTAAACCCTTACCTTTTGTGTATTAAA  400

seq1  TTGCATTTGCTTTAGGAATTTAGTTTATGCACTTTGTAGTTGCCCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTGCTTTAGGAATTTAGTTTATGCACTTTGTAGTTGCCCTATTT  450

seq1  TTGCATCTCAACATTTTTCTACCTAAGGACACATCTAGTGTGTGCTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTCAACATTTTTCTACCTAAGGACACATCTAGTGTGTGCTAAGC  500

seq1  TTAAATTCCTTAAATAATAATTCAGTAGAATATTAAGTCATAGTTAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCCTTAAATAATAATTCAGTAGAATATTAAGTCATAGTTAATGG  550

seq1  TTTCAGTGCTTTCTGCTCTTTTTGTTATATTTTGTTTTTTCTTTTTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGCTTTCTGCTCTTTTTGTTATATTTTGTTTTTTCTTTTTAAGT  600

seq1  GTTTGGCAACATATTGACTGCATGGGGATTGACAGGCAGCATATTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAACATATTGACTGCATGGGGATTGACAGGCAGCATATTCCTGA  650

seq1  TACATACCTATGTGAACGTTGTCAGCCCAGGTAAGTTATTATACCTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACCTATGTGAACGTTGTCAGCCCAGGTAAGTTATTATACCTTATA  700

seq1  AAACTTTCAGTTAGCTCACTAAAA-TTTTTTTCATCTTCTAAGCATTTGG  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACTTTCAGTTAGCTCACTAAAATTTTTTTTCATCTTCTAAGCATTTGG  750

seq1  CATTTTCTGGCAACATCATTAGAATTTGGTATGATAGTGCAGGTTTGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGGCAACATCATTAGAATTTGGTATGATAGTGCAGGTTTGTAA  800

seq1  TACAAGCCATTGGAGCTGCTGAGGCAGGAGTATTGAAAAGCTCAAGGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCCATTGGAGCTGCTGAGGCAGGAGTATTGAAAAGCTCAAGGTTT  850

seq1  GGTAAAACAGAGTAAGTTCAAGTCTAGTCGAGGTAACTTAGACC-CTTCC  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTAAAACAGAGTAAGTTCAAGTCTAGTCGAGGTAACTTAGACCTCTTCC  900

seq1  TCAAAATAAAAGCAGAAAAACCTGG-AGGAATGTGGTAAAGTACTTGTAT  947
      || |||||||||||||||| | ||| |||||||||||||||||| |||||
seq2  TC-AAATAAAAGCAGAAAACCTTGGAAGGAATGTGGTAAAGTACCTGTAT  949

seq1  AGTATCCATACTCAAGGCACTGAATTTAAACCTGAGTTCTCCAGAAAAGG  997
      ||||| |||||||||||||||| ||||||||||||||||| ||||||| |
seq2  AGTAT-CATACTCAAGGCACTGGATTTAAACCTGAGTTCT-CAGAAAAAG  997

seq1  GGTTTAGGGAATATAACTTTATGGTGATAGAATGTTTGATTAACCTGTGA  1047
      || |||||||||||| |||    |||||||||||  ||||| ||||||||
seq2  GG-TTAGGGAATATACCTT--ACGTGATAGAATG--TGATT-ACCTGTGA  1041

seq1  GAGGCTCTGAATTTAATCCCCAGTGTTTCTCTTTTTTCCCCTCC-CCCAG  1096
      ||||||||||   | |||| ||| ||||||||||||| |||||| |||||
seq2  GAGGCTCTGA---TTATCCTCAG-GTTTCTCTTTTTTTCCCTCCTCCCAG  1087