BAC Information

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BAC

Clone NameB6Ng01-011A16
Chromosome5 (Build37)
Map Location 86,357,762 - 86,491,492
singlet/doubletdoublet
Overlap geneCenpc1
Upstream genenone
Downstream geneLOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A16.bB6Ng01-011A16.g
ACCDH846536DH846537
length7561,066
definitionDH846536|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A16, 5' end.DH846537|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,357,762 - 86,358,516)(86,490,427 - 86,491,492)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttgggataggtaaagatcctttcccaatttcgtaacattgaa
agaaaaaaaaatgagtgatcttactttctttttttttaattaggtatttt
cctcgtttacattttcaatgctatcccaaaggtcccccatacccacccac
ccccaatcccctacccaccctctccccctttttggccctggcgttcccct
gtactggggcatctaaagtttgcaagtccaatgggcctctctttccagtg
atggccgactaggccatcttttgatacatatgcagctagagtcaagagct
ccggggtactggttagttcatattgttgttccacctatagggttgcagat
ccctttggctgcttgggtactttctctatctcctgcattgggggccctgt
gatccatccaatagctgactgtgatcatcctcttttgtgtaagccaggcc
catgcataatgtctaaagaaaatccattatttggaccggtacaccactat
cttgctactaaatgaaatgaaatcattctttttaccttttcattacccat
gtcctggaagaaagagaatattgactatgttacatacgcagaagggtagg
tctgtatgaatctaagtatctaccctctgataagagtttctagatggata
gaggaa
gaattctctgtttagctctgtaccttatttttaaattgggtgatttggtt
tgttggtgtctaatttctcaagttctttttatattttggatattagtcct
cttgtcagctatagtgttggtgaagatcttttcccattctataggctgcc
attttgtcctattgatggcgtctttagccttgcagaagcttttcagtttc
cagggcttaaagcttggaatgtgggtggcaagctccttcttagtcatctt
gcctgcttctagggtgctttatagtattatactggacagttgatagacac
ttgtccaatgagtgcatgaaaatatgttctcttattaattatgtattgta
ctggaattatttgaagatgagttgtatttgattatattttaaaaaaattg
atagttaacttttctttcaggatcatctaaagaactaccacagaagatat
tgccggtcttccaggtaccatttttatacttgaacttttaacgtgactta
ttttcatctttacaaaatggatttgaagataaaaaagttgttaccttgga
ctgattaatttctatgcccactaattgtttggtcttttaattattttata
taagaaagaaatattaacacaagttgtataataacttagtggaagtaaga
aaaaatacttacatagaatcatgaacaagaagcattgaacactgaatttt
tttttccaaatttttattaggaattttcttcatttacatttcaaatgcta
tcccgaaagttccccataccctccccccccacccaactcccacttcttgg
ccctggtgttcccctgtactggggcatataaagtttgcaagaccaagggg
cctcttttcccaatgatgggccgactaggccatcttctgctacatatgca
gctagagacacgagctctgagggtactggtttagttcatgttgtggttcc
acctatagggttgcagacctctttagctccttgggtactttcttctagct
cctccattgggggccctgtgttcatccatagctgactggtgagatccact
tctgtgtttgcaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86357762_86358516
seq2: B6Ng01-011A16.b_44_798

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC  100

seq1  TATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATTTCGTAACATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATTTCGTAACATTGAA  150

seq1  AGAAAAAAAAATGAGTGATCTTACTTTCTTTTTTTTTAATTAGGTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAATGAGTGATCTTACTTTCTTTTTTTTTAATTAGGTATTTT  200

seq1  CCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCAC  250

seq1  CCCCAATCCCCTACCCACCCTCTCCCCCTTTTTGGCCCTGGCGTTCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATCCCCTACCCACCCTCTCCCCCTTTTTGGCCCTGGCGTTCCCCT  300

seq1  GTACTGGGGCATCTAAAGTTGGCAAGTCCAATGGGCCTCTCCTTGCAGTG  350
      |||||||||||||||||||| |||||||||||||||||||| || |||||
seq2  GTACTGGGGCATCTAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTG  350

seq1  ATGGCCGACTAGGCCATCTTTTGATGCATATGCAGCTAGAGACAAGAGCT  400
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  400

seq1  CCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTT  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGAT  450

seq1  CCCTTTGGCTGCTTGGGTAATATCTCTATCTCCTGCATTGGGGGCCGTGT  500
      ||||||||||||||||||| | |||||||||||||||||||||||| |||
seq2  CCCTTTGGCTGCTTGGGTACTTTCTCTATCTCCTGCATTGGGGGCCCTGT  500

seq1  GACCCATCCAATAGCTGACTGTGATCTTACTTTCTAAAGCAAGCCATGAG  550
      || ||||||||||||||||||||||| | || | |   | |||||| |  
seq2  GATCCATCCAATAGCTGACTGTGATCATCCTCTTTTGTGTAAGCCAGGCC  550

seq1  CATTATGTATGTCTAAAGCAAATCCATGGGTCAGACAGGGACACAGCTTT  600
      |||     |||||||||| ||||||||   |  ||| || ||||  || |
seq2  CATGCATAATGTCTAAAGAAAATCCATTATTTGGACCGGTACACCACTAT  600

seq1  CTAGTCACTAAGTTAGATGAAACCATTCTCTTTTCCTTTTCATTACCCAT  650
      || |  ||||| | | |||||| |||||| ||| ||||||||||||||||
seq2  CTTGCTACTAAATGAAATGAAATCATTCTTTTTACCTTTTCATTACCCAT  650

seq1  CTCCTGGCAGAAAGAGAACATGGACTATCTTAAGTAAGCAGAGGGGTGGG  700
       |||||| |||||||||| || |||||| |||  || ||||| |||| ||
seq2  GTCCTGGAAGAAAGAGAATATTGACTATGTTACATACGCAGAAGGGTAGG  700

seq1  TCTGTATAAATGTAAGTCTAGAACCTCTGATAAGAGTCTCTGGATGGATA  750
      ||||||| ||| ||||| |  | |||||||||||||| ||| ||||||||
seq2  TCTGTATGAATCTAAGTATCTACCCTCTGATAAGAGTTTCTAGATGGATA  750

seq1  GAGGA  755
      |||||
seq2  GAGGA  755

seq1: chr5_86490427_86491492
seq2: B6Ng01-011A16.g_67_1132 (reverse)

seq1  GGCCTGGCAAACACAGAAGTGGATGCTCA-CAGTCAGCTATTGGAAGAAA  49
      ||||| |||||||||||||||||| |||| |||||||||| |||| | ||
seq2  GGCCT-GCAAACACAGAAGTGGAT-CTCACCAGTCAGCTA-TGGATG-AA  46

seq1  CACAGGGCCCCCAATGGAGGAGCTAG-AGAAAGTACCCAAGGAGCTAAAG  98
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACAGGGCCCCCAATGGAGGAGCTAGAAGAAAGTACCCAAGGAGCTAAAG  96

seq1  GGGTCTGCAACCCTATAGGTGGAACAACAACATGAACT-AACCAGTACCC  147
       |||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AGGTCTGCAACCCTATAGGTGGAACCACAACATGAACTAAACCAGTACCC  146

seq1  TCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGG  196

seq1  -CCATCATTGGGAAAAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCC  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATTGGGAAAAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCC  246

seq1  AGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTTGGGTGGGGGGGGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTTGGGTGGGGGGGGAG  296

seq1  GGTATGGGGAACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGGAACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATTC  346

seq1  CTAATAAAAATTTGGAAAAAAAAATTCAGTGTTCAATGCTTCTTGTTCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAATTTGGAAAAAAAAATTCAGTGTTCAATGCTTCTTGTTCAT  396

seq1  GATTCTATGTAAGTATTTTTTCTTACTTCCACTAAGTTATTATACAACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATGTAAGTATTTTTTCTTACTTCCACTAAGTTATTATACAACTT  446

seq1  GTGTTAATATTTCTTTCTTATATAAAATAATTAAAAGACCAAACAATTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATATTTCTTTCTTATATAAAATAATTAAAAGACCAAACAATTAG  496

seq1  TGGGCATAGAAATTAATCAGTCCAAGGTAACAACTTTTTTATCTTCAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGAAATTAATCAGTCCAAGGTAACAACTTTTTTATCTTCAAAT  546

seq1  CCATTTTGTAAAGATGAAAATAAGTCACGTTAAAAGTTCAAGTATAAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTAAAGATGAAAATAAGTCACGTTAAAAGTTCAAGTATAAAAA  596

seq1  TGGTACCTGGAAGACCGGCAATATCTTCTGTGGTAGTTCTTTAGATGATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTGGAAGACCGGCAATATCTTCTGTGGTAGTTCTTTAGATGATC  646

seq1  CTGAAAGAAAAGTTAACTATCAATTTTTTTAAAATATAATCAAATACAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAAAAGTTAACTATCAATTTTTTTAAAATATAATCAAATACAAC  696

seq1  TCATCTTCAAATAATTCCAGTACAATACATAATTAATAAGAGAACATATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCAAATAATTCCAGTACAATACATAATTAATAAGAGAACATATT  746

seq1  TTCATGCACTCATTGGACAAGTGTCTATCAACTGTCCAGTATAATACTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCACTCATTGGACAAGTGTCTATCAACTGTCCAGTATAATACTAT  796

seq1  AAAGCACCCTAGAAGCAGGCAAGATGACTAAGAAGGAGCTTGCCACCCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCCTAGAAGCAGGCAAGATGACTAAGAAGGAGCTTGCCACCCAC  846

seq1  ATTCCAAGCTTTAAGCCCTGGAAACTGAAAAGCTTCTGCAAGGCTAAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGCTTTAAGCCCTGGAAACTGAAAAGCTTCTGCAAGGCTAAAGA  896

seq1  CGCCATCAATAGGACAAAATGGCAGCCTATAGAATGGGAAAAGATCTTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATCAATAGGACAAAATGGCAGCCTATAGAATGGGAAAAGATCTTCA  946

seq1  CCAACACTATAGCTGACAAGAGGACTAATATCCAAAATATAAAAAGAACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTATAGCTGACAAGAGGACTAATATCCAAAATATAAAAAGAACT  996

seq1  TGAGAAATTAGACACCAACAAACCAAATCACCCAATTTAAAAATAAGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATTAGACACCAACAAACCAAATCACCCAATTTAAAAATAAGGTA  1046

seq1  CAGAGCTAAACAGAGAATTC  1066
      ||||||||||||||||||||
seq2  CAGAGCTAAACAGAGAATTC  1066