BAC Information

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BAC

Clone NameB6Ng01-011A20
Chromosome5 (Build37)
Map Location 12,259,735 - 12,417,506
singlet/doubletdoublet
Overlap geneLOC100041626, EG668059, Sema3d
Upstream geneLOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A20.bB6Ng01-011A20.g
ACCDH846544DH846545
length6451,101
definitionDH846544|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A20, 5' end.DH846545|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,259,735 - 12,260,377)(12,416,392 - 12,417,506)
sequence
gaattcatttctgaagaaatttgtggcatgttaattttagaattttgtta
tgtttaagatgcctaacctagtattatcaataagctaaacatttgatttc
aagccaaactaaaattcacctggaaaaaactgtatgccccaccctgagat
gatattgccagtttggcctgcttgtttttatatctgttagcaagaatctc
tctttcccttgaatagagacaggaagataagctaaagacttttactggaa
acataacacaagtagagatggaaagctcaagttaaacatagtaatattac
ctgtgaaaatggaagtaggaatcatttttcaagctcagtgtctcatcact
gtaaaattcaactcagttttttttttcttctagagtcttaactagtagca
agcacatgcatgaaagcagctgtgaaagcagagatcggaggaagaattga
aacagaaagaaaagaagcaatgaggccatgtcatatagttaatggcttct
gactacttgcagaacactaggaagtcattgtagtatgtgcagagttgccc
tcctgaggcatgtacaagctggggtttttacctcctctgctcttccacta
tcgagttggtgttttttaatggaaagaactagtattgttattgct
gaattctcagtctttatgtattagaacatcaggtaaatgctggggtaaca
atgtcctcattgtggtgccacaattaagctccattagaaagagtccagag
tggacttggcttacattgactttactcttacttgaatagtatttttattc
ctgtaattttcattatatatgtgaaataaataaaacatttcatcaaatga
tattttcaatgtctgaaactccttagctaactcataatatatggaagcat
actaagaatcttggatgatcttcgattgctatacaatatgtttacatagc
actttgatcacaactgtgtttgctgactctcacacactagcacattgcaa
acagttggggctatgagcatggcaggaaagcaatggtaaacacaacagaa
tattttgcagaactttatggtaaactgcctcatgactatcatgctactta
aaactactttttaatttcttattttgatgaactgaatgttgtttcctttt
tttttaacacagaataactatatcatttaaacaactaataaacaatacat
taaaataatttcgttgtttaggtaattgtgcttagctgattatcttacac
ttttattattattttttttactaagtattttcttcatttacatttccaat
gctatcccaaaagtcccccatacccttcccccccactcccctacccaccc
attcccaatgaatgttgtttcctttgtccctttttgaagataactcaagt
aaagattcccatgtttatccatgatatataatttgcaaaaatagttgatc
atgataagatttaaataaagcaagcatcaatataataatagccatagcaa
aatgaaatagattaattgcataaaataaataataaataggaagggttctc
ttaagatatttctctattggaaaataagttaactttaaatcatgtgtgtg
tatgcatgtatgcccatgtgtgtgtgctatgtgtgtattaagagagagaa
ttacaaactgctgatatgttcatgttcccatctatgtcttaaatcttaaa
accatctgtaaccgctggtgccacctcagtttggccatacgtttggcctt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12259735_12260377
seq2: B6Ng01-011A20.b_34_678

seq1  GAATTCATTTCTGAAGAAATTTGTGGCATGTTAATTTTAGAATTTTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTGAAGAAATTTGTGGCATGTTAATTTTAGAATTTTGTTA  50

seq1  TGTTTAAGATGCCTAACCTAGTATTATCAATAAGCTAAACATTTGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGATGCCTAACCTAGTATTATCAATAAGCTAAACATTTGATTTC  100

seq1  AAGCCAAACTAAAATTCACCTGGAAAAAACTGTATGCCCCACCCTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAACTAAAATTCACCTGGAAAAAACTGTATGCCCCACCCTGAGAT  150

seq1  GATATTGCCAGTTTGGCCTGCTTGTTTTTATATCTGTTAGCAAGAATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCCAGTTTGGCCTGCTTGTTTTTATATCTGTTAGCAAGAATCTC  200

seq1  TCTTTCCCTTGAATAGAGACAGGAAGATAAGCTAAAGACTTTTACTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTTGAATAGAGACAGGAAGATAAGCTAAAGACTTTTACTGGAA  250

seq1  ACATAACACAAGTAGAGATGGAAAGCTCAAGTTAAACATAGTAATATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACACAAGTAGAGATGGAAAGCTCAAGTTAAACATAGTAATATTAC  300

seq1  CTGTGAAAATGGAAGTAGGAATCATTTTTCAAGCTCAGTGTCTCATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAATGGAAGTAGGAATCATTTTTCAAGCTCAGTGTCTCATCACT  350

seq1  GTAAAATTCAACTCAGTTTTTTTTTTCTTCTAGAGTCTTAACTAGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTCAACTCAGTTTTTTTTTTCTTCTAGAGTCTTAACTAGTAGCA  400

seq1  AGCACATGCATGAAAGCAGCTGTGAAAGCAGAGATCGGAGGAAGAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGCATGAAAGCAGCTGTGAAAGCAGAGATCGGAGGAAGAATTGA  450

seq1  AACAGAAAGAAAAGAAGCAATGAGGCCATGTCATATAGTTAATGGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGAAAAGAAGCAATGAGGCCATGTCATATAGTTAATGGCTTCT  500

seq1  GACTACTTGCAGAACACTAGGAAGTCATTGTAGTATGTGCAGAGTTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTGCAGAACACTAGGAAGTCATTGTAGTATGTGCAGAGTTGCCC  550

seq1  TCCTGAGGCATGTACAAGCTGGGG-TTTTACCTCCTCTGCTCTTCCACTA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCTGAGGCATGTACAAGCTGGGGTTTTTACCTCCTCTGCTCTTCCACTA  600

seq1  TCGAGTTGGTGTTTTTATATGGAAAGAACTAG-AATGTTATTGCT  643
      ||||||||||||||||  |||||||||||||| | ||||||||||
seq2  TCGAGTTGGTGTTTTTTAATGGAAAGAACTAGTATTGTTATTGCT  645

seq1: chr5_12416392_12417506
seq2: B6Ng01-011A20.g_65_1165 (reverse)

seq1  AAAGGCAAAAACGTAATGCCCCAAACTGA-GTGGCACCAGCGGTACAAGA  49
      ||||||  |||||||  |  ||||||||| ||||||||||||||   |||
seq2  AAAGGC-CAAACGTATGG--CCAAACTGAGGTGGCACCAGCGGTTACAGA  47

seq1  T-GTTTTAAGGATATTAAAGACATAGGTGTG-ACATGAACTATAATCAGC  97
      | ||||||||   ||| ||||||||| || | |||||||| || ||||||
seq2  TGGTTTTAAG---ATTTAAGACATAGATGGGAACATGAAC-AT-ATCAGC  92

seq1  AGTTTTGTAATTCTCTCTCTTTAATACACACATAAGCACACACACATGTG  147
      || |||||||||||||||| ||||||||||||| |||||||||||||| |
seq2  AG-TTTGTAATTCTCTCTC-TTAATACACACAT-AGCACACACACATGGG  139

seq1  CATACATGCATACACACACATGAATTTTAAAGTTTAACTTTATTTTTCCA  197
      |||||||||||||||||||||||  ||||||| |||||||   |||||||
seq2  CATACATGCATACACACACATGA--TTTAAAG-TTAACTT--ATTTTCCA  184

seq1  ATAGAGAAAATATCTTAAGAGAACCCTTCCTATTTATTATTTATTTTATG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAG-AAATATCTTAAGAGAACCCTTCCTATTTATTATTTATTTTATG  233

seq1  CAATTAATCTATTTCATTTTGCTATGGCTATTATTATATTGATGCTTGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATCTATTTCATTTTGCTATGGCTATTATTATATTGATGCTTGCT  283

seq1  TTATTTAAATCTTATCATGATCAACTATTTTTGCAAATTATATATCATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATCTTATCATGATCAACTATTTTTGCAAATTATATATCATGG  333

seq1  ATAAACATGGGAATCTTTACTTGAGTTATCTTCAAAAAGGGACAAAGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATGGGAATCTTTACTTGAGTTATCTTCAAAAAGGGACAAAGGAA  383

seq1  ACAACATTCATTGGGAATGGGTGGGTAGGGGAGTGGGGGGGAAGGGTATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTCATTGGGAATGGGTGGGTAGGGGAGTGGGGGGGAAGGGTATG  433

seq1  GGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACTTAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACTTAGTA  483

seq1  AAAAAAATAATAATAAAAGTGTAAGATAATCAGCTAAGCACAATTACCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAATAATAAAAGTGTAAGATAATCAGCTAAGCACAATTACCTA  533

seq1  AACAACGAAATTATTTTAATGTATTGTTTATTAGTTGTTTAAATGATATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGAAATTATTTTAATGTATTGTTTATTAGTTGTTTAAATGATATA  583

seq1  GTTATTCTGTGTTAAAAAAAAAGGAAACAACATTCAGTTCATCAAAATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTGTGTTAAAAAAAAAGGAAACAACATTCAGTTCATCAAAATAA  633

seq1  GAAATTAAAAAGTAGTTTTAAGTAGCATGATAGTCATGAGGCAGTTTACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAAAGTAGTTTTAAGTAGCATGATAGTCATGAGGCAGTTTACC  683

seq1  ATAAAGTTCTGCAAAATATTCTGTTGTGTTTACCATTGCTTTCCTGCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTCTGCAAAATATTCTGTTGTGTTTACCATTGCTTTCCTGCCAT  733

seq1  GCTCATAGCCCCAACTGTTTGCAATGTGCTAGTGTGTGAGAGTCAGCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGCCCCAACTGTTTGCAATGTGCTAGTGTGTGAGAGTCAGCAAA  783

seq1  CACAGTTGTGATCAAAGTGCTATGTAAACATATTGTATAGCAATCGAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGTGATCAAAGTGCTATGTAAACATATTGTATAGCAATCGAAGA  833

seq1  TCATCCAAGATTCTTAGTATGCTTCCATATATTATGAGTTAGCTAAGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAAGATTCTTAGTATGCTTCCATATATTATGAGTTAGCTAAGGAG  883

seq1  TTTCAGACATTGAAAATATCATTTGATGAAATGTTTTATTTATTTCACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACATTGAAAATATCATTTGATGAAATGTTTTATTTATTTCACAT  933

seq1  ATATAATGAAAATTACAGGAATAAAAATACTATTCAAGTAAGAGTAAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAAAATTACAGGAATAAAAATACTATTCAAGTAAGAGTAAAGT  983

seq1  CAATGTAAGCCAAGTCCACTCTGGACTCTTTCTAATGGAGCTTAATTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAGCCAAGTCCACTCTGGACTCTTTCTAATGGAGCTTAATTGTG  1033

seq1  GCACCACAATGAGGACATTGTTACCCCAGCATTTACCTGATGTTCTAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAATGAGGACATTGTTACCCCAGCATTTACCTGATGTTCTAATA  1083

seq1  CATAAAGACTGAGAATTC  1115
      ||||||||||||||||||
seq2  CATAAAGACTGAGAATTC  1101