BAC Information

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BAC

Clone NameB6Ng01-011O06
Chromosome5 (Build37)
Map Location 81,292,636 - 81,407,502
singlet/doubletdoublet
Overlap geneLOC100039506, LOC100039384
Upstream genenone
Downstream geneLphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011O06.bB6Ng01-011O06.g
ACCDH847147DH847148
length1,097621
definitionDH847147|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O06, 5' end.DH847148|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,406,401 - 81,407,502)(81,292,636 - 81,293,256)
sequence
gaattctttgacatttaacgtcactgatttctcactatactgagctcttt
atgactcatataaatcataactttttgcagtactaactgacaattatttt
acagcctgaagtagttagatgtgtatgagacaatagctgtcttgtctgtc
ttttattttaacatattagcaaataaactgaaaataagctcataataatt
tttttaatggtaacatatatgtgttttgctttcttaagggagcaaaatta
ttttggggactgagtctacatcacacactcatggtttttctagccacaga
gaaatgagagaaacaccatttaacttatgagcatcaagcaatgatttggt
tgtttaaagatttaatcttatttagaaactgccagatttcagtgatttct
catcagtaagagctaatatcactcttagatccgaagtacctgaagagttt
gaaaatgatcttcaagttgatattttacagaatataattactaatgaaat
tgaaagtgttaaaataatgattcagtttacttaaacacaagtttgcattt
ccacaatctcaagtatcatgttggaatgaatgtctcttatttgatcatta
aaaagtaaaattcgattaggaaatgtaaacccaaataaaaatatgtgctt
atattatacttagaggaataaaaaacaccctctgtgataggaaatgattg
ttattaaattttctatgaatttaccaaggactcatttcttaaaaatgtgt
ttctggtctaaaaatatatctaattttttgaataagaaattttactattc
tatcacaaatacactcttagatatgaaattactttcttgtaacctgaaga
atatttaatttttgcattctttttattcttgtataccaattagagcataa
tccccttcaattgaattttaacctaattgttagtttttctctggaattag
aaaaatatctcaactgagagtgagaaacacactttctgaggggtggacac
atgggcacacacatacacatagagctacaggctacatcatagtggtagtg
ctctcaggagacaaagatgtctggtgccttggtggttcaggtatgta
gaattccatcacagggaaggcacagatgctaacgctgaaggaagtgtgga
atctttgctggatgaaaaaagaaaagaaaagaaaatgaaagcaaagaaat
gaatttactaccaaagtatcgtcactttcagaataacagacatcattttc
atacttaaaatgtttgaggacaaattaatgagttaaataacaaatttcca
cttactttggcaaataatcctgagtagttaatttacccagcctctgctct
tccagctttgtaaatgtgtctttacatcctaatgtccaagacctatgagt
atattacactacagggcttgagaagattttgcagaagagagggtttgaaa
gaccttgagaagggagatcacgaatacctaaaaatgtcagctaaaatcat
tgagctggatgcaattctgtgtaggtggttaaatatttaaggtttgaaac
agtctctgttgactataactgccttcgaaatgttggatgtagggaacagg
tcagtgaatctcatcagcttctggaatgaggagaggacaggaaactattt
ccctgggaaccttcacaaaggaaaactgtcctgtcaattcaagatgatgg
agtgattgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81406401_81407502
seq2: B6Ng01-011O06.b_43_1139 (reverse)

seq1  TACATACCTGAACACACAAGGCACAAGGCATCCTTTGTCTCCTGAGATGC  50
      |||||||||||||   |||||||| || ||| ||||||||||||||| ||
seq2  TACATACCTGAACCACCAAGGCACCAGACAT-CTTTGTCTCCTGAGA-GC  48

seq1  ACTTACCACTATGGATTGTAGGCTGTAGCTCTATGTGTATGTGTGTGCCC  100
      || ||||||||||   ||||| ||||||||||||||||||||||||||||
seq2  AC-TACCACTATG--ATGTAGCCTGTAGCTCTATGTGTATGTGTGTGCCC  95

seq1  ATGTGTCCACCCCTCAGAAAGTGTGTTTCTCACTCTCAGTTTGAGATATT  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTGTCCACCCCTCAGAAAGTGTGTTTCTCACTCTCAG-TTGAGATATT  144

seq1  TTTCTAATTCCAGAGAAAAACTAACAATTAGGTTAAAATTCAATTG-AGG  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTAATTCCAGAGAAAAACTAACAATTAGGTTAAAATTCAATTGAAGG  194

seq1  GGATTATGCTCTAATTGGTATACAAGAATAAAAAGAATGCAAAAATTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATGCTCTAATTGGTATACAAGAATAAAAAGAATGCAAAAATTAAA  244

seq1  TATTCTTCAGGTTACAAGAAAGTAATTTCATATCTAAGAGTGTATTTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCAGGTTACAAGAAAGTAATTTCATATCTAAGAGTGTATTTGTG  294

seq1  ATAGAATAGTAAAATTTCTTATTCAAAAAATTAGATATATTTTTAGACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAGTAAAATTTCTTATTCAAAAAATTAGATATATTTTTAGACCA  344

seq1  GAAACACATTTTTAAGAAATGAGTCCTTGGTAAATTCATAGAAAATTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACATTTTTAAGAAATGAGTCCTTGGTAAATTCATAGAAAATTTAA  394

seq1  TAACAATCATTTCCTATCACAGAGGGTGTTTTTTATTCCTCTAAGTATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCATTTCCTATCACAGAGGGTGTTTTTTATTCCTCTAAGTATAA  444

seq1  TATAAGCACATATTTTTATTTGGGTTTACATTTCCTAATCGAATTTTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCACATATTTTTATTTGGGTTTACATTTCCTAATCGAATTTTACT  494

seq1  TTTTAATGATCAAATAAGAGACATTCATTCCAACATGATACTTGAGATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGATCAAATAAGAGACATTCATTCCAACATGATACTTGAGATTG  544

seq1  TGGAAATGCAAACTTGTGTTTAAGTAAACTGAATCATTATTTTAACACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGCAAACTTGTGTTTAAGTAAACTGAATCATTATTTTAACACTT  594

seq1  TCAATTTCATTAGTAATTATATTCTGTAAAATATCAACTTGAAGATCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCATTAGTAATTATATTCTGTAAAATATCAACTTGAAGATCATT  644

seq1  TTCAAACTCTTCAGGTACTTCGGATCTAAGAGTGATATTAGCTCTTACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCTTCAGGTACTTCGGATCTAAGAGTGATATTAGCTCTTACTG  694

seq1  ATGAGAAATCACTGAAATCTGGCAGTTTCTAAATAAGATTAAATCTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATCACTGAAATCTGGCAGTTTCTAAATAAGATTAAATCTTTAA  744

seq1  ACAACCAAATCATTGCTTGATGCTCATAAGTTAAATGGTGTTTCTCTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAAATCATTGCTTGATGCTCATAAGTTAAATGGTGTTTCTCTCAT  794

seq1  TTCTCTGTGGCTAGAAAAACCATGAGTGTGTGATGTAGACTCAGTCCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGGCTAGAAAAACCATGAGTGTGTGATGTAGACTCAGTCCCCA  844

seq1  AAATAATTTTGCTCCCTTAAGAAAGCAAAACACATATATGTTACCATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTGCTCCCTTAAGAAAGCAAAACACATATATGTTACCATTAA  894

seq1  AAAAATTATTATGAGCTTATTTTCAGTTTATTTGCTAATATGTTAAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTATGAGCTTATTTTCAGTTTATTTGCTAATATGTTAAAATA  944

seq1  AAAGACAGACAAGACAGCTATTGTCTCATACACATCTAACTACTTCAGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGACAAGACAGCTATTGTCTCATACACATCTAACTACTTCAGGC  994

seq1  TGTAAAATAATTGTCAGTTAGTACTGCAAAAAGTTATGATTTATATGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATAATTGTCAGTTAGTACTGCAAAAAGTTATGATTTATATGAGT  1044

seq1  CATAAAGAGCTCAGTATAGTGAGAAATCAGTGACGTTAAATGTCAAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAGCTCAGTATAGTGAGAAATCAGTGACGTTAAATGTCAAAGAA  1094

seq1  TTC  1102
      |||
seq2  TTC  1097

seq1: chr5_81292636_81293256
seq2: B6Ng01-011O06.g_69_689

seq1  GAATTCCATCACAGGGAAGGCACAGATGCTAACGCTGAAGGAAGTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCACAGGGAAGGCACAGATGCTAACGCTGAAGGAAGTGTGGA  50

seq1  ATCTTTGCTGGATGAAAAAAGAAAAGAAAAGAAAATGAAAGCAAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCTGGATGAAAAAAGAAAAGAAAAGAAAATGAAAGCAAAGAAAT  100

seq1  GAATTTACTACCAAAGTATCGTCACTTTCAGAATAACAGACATCATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACTACCAAAGTATCGTCACTTTCAGAATAACAGACATCATTTTC  150

seq1  ATACTTAAAATGTTTGAGGACAAATTAATGAGTTAAATAACAAATTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAATGTTTGAGGACAAATTAATGAGTTAAATAACAAATTTCCA  200

seq1  CTTACTTTGGCAAATAATCCTGAGTAGTTAATTTACCCAGCCTCTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTGGCAAATAATCCTGAGTAGTTAATTTACCCAGCCTCTGCTCT  250

seq1  TCCAGCTTTGTAAATGTGTCTTTACATCCTAATGTCCAAGACCTATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTTGTAAATGTGTCTTTACATCCTAATGTCCAAGACCTATGAGT  300

seq1  ATATTACACTACAGGGCTTGAGAAGATTTTGCAGAAGAGAGGGTTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACACTACAGGGCTTGAGAAGATTTTGCAGAAGAGAGGGTTTGAAA  350

seq1  GACCTTGAGAAGGGAGATCACGAATACCTAAAAATGTCAGCTAAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAGAAGGGAGATCACGAATACCTAAAAATGTCAGCTAAAATCAT  400

seq1  TGAGCTGGATGCAATTCTGTGTAGGTGGTTAAATATTTAAGGTTTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGATGCAATTCTGTGTAGGTGGTTAAATATTTAAGGTTTGAAAC  450

seq1  AGTCTCTGTTGACTATAACTGCCTTCGAAATGTTGGATGTAGGGAACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGTTGACTATAACTGCCTTCGAAATGTTGGATGTAGGGAACAGG  500

seq1  TCAGTGAATCTCATCAGCTTCTGGAATGAGGAGAGGACAGGAAACTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAATCTCATCAGCTTCTGGAATGAGGAGAGGACAGGAAACTATTT  550

seq1  CCCTGGGAACCTTCACAAAGGAAAACTGTCCTGTCAATTCAAGATGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAACCTTCACAAAGGAAAACTGTCCTGTCAATTCAAGATGATGG  600

seq1  AGTGATTGTGTGTGTGTGTGT  621
      |||||||||||||||||||||
seq2  AGTGATTGTGTGTGTGTGTGT  621