BAC Information

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BAC

Clone NameB6Ng01-012A14
Chromosome5 (Build37)
Map Location 28,603,449 - 28,776,127
singlet/doubletdoublet
Overlap genePrr8
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
Downstream geneShh, LOC100039258, Rnf32, EG664949, Lmbr1, EG620572, Gm1040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A14.bB6Ng01-012A14.g
ACCDH847238DH847239
length983225
definitionDH847238|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A14, 5' end.DH847239|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,775,526 - 28,776,127)(28,603,449 - 28,603,673)
sequence
gaattcactctgtagcgtagataggccttgaacttggtaatcttcctgcc
tcatcccctcagctgggtttgcaggcctgtagagtcagacaccactcatt
agtatctatgaaatgtgtagtagcattatacagtattatgtagtggcacc
tttgtgttatatatatatatatattcttattgctaaaaaaaatgccaaga
accatctggccctgttgagttgtgcattgtgcttgcttctggcactcata
gctgttgctgactcctgactaatcagagtggtggctgtggaaggctgggg
tggtcaaggtgactttttgccttaatgacagtggaatgggccacacctgt
ccactcttcccttcatgaacatcccctgcagtttatagtgttgtttgaga
acatttctttcaacactgaagtaatcctctccagctctgttaccacttct
caactaagtttccatgacaccccgactcctcggttgtcacagggatagat
tctgtctcaagagacttccttccaggggctaaggagatggctcatcagta
aggtgttttccacaaaagtatgaagatccaagtttggatttccagagccc
atgtaaaaagtcaagcctggactgaggagatagttcagtggataaaacag
tttacactgaaagcctgagaatgagagttcgaatccccagcatgcaccta
aaaacagatgggtacaattgctgtaataaacgtcaatgtgccacagtaac
attgtgaaggaatatgcttttgtctgagcagtagccacattagtcacgtg
gtaagcagggatgggtgtgccctctaggcttcgctgtcccacaggcagaa
cacagggttgctaaggaacatggtggtcctggacaagtgtctgctgctct
ttctcttaagccaggcattagcttctcttcagctatggatgtgcccagga
gagtcctcatccaatgaaagatggtttacaccg
gagaacacttaattggacaaactgggacattgctgggtcttctgtgtcct
ggacttcatattcccttcttggcttcttcctctcctgaagtgaaaaggga
tttccaggagtttaaaaagaaaacaaaatgataacaaacacaaaccacag
agtgccaaacctttaaagggtatagagcattgcacagttccaggggttga
cctgattgggggtgggggatgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_28775526_28776127
seq2: B6Ng01-012A14.b_44_645 (reverse)

seq1  ATGGGCTCTGGAAATCCAAACTTGGATCTTCATACTTTTGTGGAAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTCTGGAAATCCAAACTTGGATCTTCATACTTTTGTGGAAAACAC  50

seq1  CTTACTGATGAGCCATCTCCTTAGCCCCTGGAAGGAAGTCTCTTGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGATGAGCCATCTCCTTAGCCCCTGGAAGGAAGTCTCTTGAGACA  100

seq1  GAATCTATCCCTGTGACAACCGAGGAGTCGGGGTGTCATGGAAACTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATCCCTGTGACAACCGAGGAGTCGGGGTGTCATGGAAACTTAGT  150

seq1  TGAGAAGTGGTAACAGAGCTGGAGAGGATTACTTCAGTGTTGAAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTGGTAACAGAGCTGGAGAGGATTACTTCAGTGTTGAAAGAAAT  200

seq1  GTTCTCAAACAACACTATAAACTGCAGGGGATGTTCATGAAGGGAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAACAACACTATAAACTGCAGGGGATGTTCATGAAGGGAAGAGT  250

seq1  GGACAGGTGTGGCCCATTCCACTGTCATTAAGGCAAAAAGTCACCTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGTGGCCCATTCCACTGTCATTAAGGCAAAAAGTCACCTTGAC  300

seq1  CACCCCAGCCTTCCACAGCCACCACTCTGATTAGTCAGGAGTCAGCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGCCTTCCACAGCCACCACTCTGATTAGTCAGGAGTCAGCAACA  350

seq1  GCTATGAGTGCCAGAAGCAAGCACAATGCACAACTCAACAGGGCCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAGTGCCAGAAGCAAGCACAATGCACAACTCAACAGGGCCAGATG  400

seq1  GTTCTTGGCATTTTTTTTAGCAATAAGAATATATATATATATATAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGCATTTTTTTTAGCAATAAGAATATATATATATATATAACACA  450

seq1  AAGGTGCCACTACATAATACTGTATAATGCTACTACACATTTCATAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCACTACATAATACTGTATAATGCTACTACACATTTCATAGATA  500

seq1  CTAATGAGTGGTGTCTGACTCTACAGGCCTGCAAACCCAGCTGAGGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGTGGTGTCTGACTCTACAGGCCTGCAAACCCAGCTGAGGGGAT  550

seq1  GAGGCAGGAAGATTACCAAGTTCAAGGCCTATCTACGCTACAGAGTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAAGATTACCAAGTTCAAGGCCTATCTACGCTACAGAGTGAAT  600

seq1  TC  602
      ||
seq2  TC  602

seq1: chr5_28603449_28603673
seq2: B6Ng01-012A14.g_89_313

seq1  GAGAACACTTAATTGGACAAACTGGGACATTGCTGGGTCTTCTGTGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACTTAATTGGACAAACTGGGACATTGCTGGGTCTTCTGTGTCCT  50

seq1  GGACTTCATATTCCCTTCTTGGCTTCTTCCTCTCCTGAAGTGAAAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCATATTCCCTTCTTGGCTTCTTCCTCTCCTGAAGTGAAAAGGGA  100

seq1  TTTCCAGGAGTTTAAAAAGAAAACAAAATGATAACAAACACAAACCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGAGTTTAAAAAGAAAACAAAATGATAACAAACACAAACCACAG  150

seq1  AGTGCCAAACCTTTAAAGGGTATAGAGCATTGCACAGTTCCAGGGGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAAACCTTTAAAGGGTATAGAGCATTGCACAGTTCCAGGGGTTGA  200

seq1  CCTGATTGGGGGTGGGGGATGAGGG  225
      |||||||||||||||||||||||||
seq2  CCTGATTGGGGGTGGGGGATGAGGG  225