BAC Information

Click to search

BAC

Clone NameB6Ng01-012E19
Chromosome5 (Build37)
Map Location 51,374,045 - 51,490,979
singlet/doubletdoublet
Overlap geneLOC666265
Upstream geneGpr125, EG637307, LOC100041015, LOC242987, EG624734
Downstream geneLOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012E19.bB6Ng01-012E19.g
ACCDH847432DH847433
length1,216213
definitionDH847432|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E19, 5' end.DH847433|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,374,045 - 51,375,301)(51,490,767 - 51,490,979)
sequence
gaattcttttctcttctttgattacttgcagctttaaattcttctgtgtt
acagagttgattaaaaaaaaacttgccatgtgttaaatgtaaattcttaa
tatgttccacttccatattcagattattagttcctggagggcagggacta
attcttgctcattttcagagtctcaatgtcccaagtttatagaatttata
aaactttttggttcaatttccaagtggctataggttaacatgctataaaa
tattttcatctctctcaaatatttctatctgcatgcatttcttttctttt
ctttctttctaactttttttttttgattctcccatagaaacatagatagt
aacacactgtgacagcattcttaagaaaatccaatgctgtgatttttaca
tgagtatttagaacaggtgtattctgaaataagcagtaaataagcattat
ttctgtctatcacagtcttcattcctattattactccatcactgctagag
tctgatacacttgtattgacaattcaaagagaatttgagcatgttcactc
tggattataaattctttattttgcatgctttttttttgtaagattcttat
gttttacaaagttattaccaccaaatccagggcctcgtgtctcgctagta
gaactgtataattcttgactccataatgcttgggagtctcatgcttcact
gaagtgccattgatttccaactaaagtgaaatgctttcatttaatgcttt
cttaagagaattacagaaaaggttgaagagggtttggcttttgaaaaatc
cattattaattttacatggcaaaattgggatttatatattgaaatttaaa
ttcagaggccctttacatctgcaaaatcgaaatgttgttctaaacatatt
tgtcttttaagctctctaaagtagaacgcaaaatttgtcgtagactttta
aatcccctgctttgctcaacaaccttagtcttttcatcactgtgcagatc
tctgtcaactatgggtaatacataatattttaatgacgaatctaaagagc
tttgatcactaaaaatacttctatctcttactcttcatgcaaaatagctt
gggggtagctgacataatgcattccattacatcttggagggttaaccatg
gagtcaacttactgtaatcaggcctaatccatgcttccgtcatgatttat
gaatcaggggtctcac
tttgagaatgtgaagtgtgggacagagagaaaaatcatgatccaagtgaa
gagatttttgccttagaagaggagacagatgtactgtggggtgtgtactg
atgagagcaaagggattggtcgccttgagagtggaaggacaaggaggctc
actatggtgggataaatattcatcagctaagagtagctgggggtggggga
agatgtagaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51374045_51375301
seq2: B6Ng01-012E19.b_44_1259

seq1  GAATTCTTTTCTCTTCTTTGATTACTTGCAGCTTTAAATTCTTCTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCTTCTTTGATTACTTGCAGCTTTAAATTCTTCTGTGTT  50

seq1  ACAGAGTTGATTAAAAAAAAACTTGCCATGTGTTAAATGTAAATTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTGATTAAAAAAAAACTTGCCATGTGTTAAATGTAAATTCTTAA  100

seq1  TATGTTCCACTTCCATATTCAGATTATTAGTTCCTGGAGGGCAGGGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCACTTCCATATTCAGATTATTAGTTCCTGGAGGGCAGGGACTA  150

seq1  ATTCTTGCTCATTTTCAGAGTCTCAATGTCCCAAGTTTATAGAATTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCTCATTTTCAGAGTCTCAATGTCCCAAGTTTATAGAATTTATA  200

seq1  AAACTTTTTGGTTCAATTTCCAAGTGGCTATAGGTTAACATGCTATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTGGTTCAATTTCCAAGTGGCTATAGGTTAACATGCTATAAAA  250

seq1  TATTTTCATCTCTCTCAAATATTTCTATCTGCATGCATTTCTTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATCTCTCTCAAATATTTCTATCTGCATGCATTTCTTTTCTTTT  300

seq1  CTTTCTTTCTAACTTTTTTTTTTTGATTCTCCCATAGAAACATAGATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTAACTTTTTTTTTTTGATTCTCCCATAGAAACATAGATAGT  350

seq1  AACACACTGTGACAGCATTCTTAAGAAAATCCAATGCTGTGATTTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTGTGACAGCATTCTTAAGAAAATCCAATGCTGTGATTTTTACA  400

seq1  TGAGTATTTAGAACAGGTGTATTCTGAAATAAGCAGTAAATAAGCATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTTAGAACAGGTGTATTCTGAAATAAGCAGTAAATAAGCATTAT  450

seq1  TTCTGTCTATCACAGTCTTCATTCCTATTATTACTCCATCACTGCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTATCACAGTCTTCATTCCTATTATTACTCCATCACTGCTAGAG  500

seq1  TCTGATACACTTGTATTGACAATTCAAAGAGAATTTGAGCATGTTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACACTTGTATTGACAATTCAAAGAGAATTTGAGCATGTTCACTC  550

seq1  TGGATTATAAATTCTTTATTTTGCATGCTTTTTTTTTGTAAGATTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATAAATTCTTTATTTTGCATGCTTTTTTTTTGTAAGATTCTTAT  600

seq1  GTTTTACAAAGTTATTACCACCAAATCCAGGGCCTCGTGTCTCGCTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAAGTTATTACCACCAAATCCAGGGCCTCGTGTCTCGCTAGTA  650

seq1  GAACTGTATAATTCTTGACTCCATAATGCTTGGGAGTCTCATGCTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTATAATTCTTGACTCCATAATGCTTGGGAGTCTCATGCTTCACT  700

seq1  GAAGTGCCATTGATTTCCAACTAAAGTGAAATGCTTTCATTTAATGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCATTGATTTCCAACTAAAGTGAAATGCTTTCATTTAATGCTTT  750

seq1  CTTAAGAGAATTACAGAAAAGGTTGAAGAGGGTTTGGCTTTTGAAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGAATTACAGAAAAGGTTGAAGAGGGTTTGGCTTTTGAAAAATC  800

seq1  CATTATTAATTTTACATGGCAAAATTGGGATTTATATATTGAAATTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAATTTTACATGGCAAAATTGGGATTTATATATTGAAATTTAAA  850

seq1  TTCAGAGGCCCTTTACATCTGCAAAATCGAAATGTTGTTCTAAACATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGCCCTTTACATCTGCAAAATCGAAATGTTGTTCTAAACATATT  900

seq1  TGTCTTTTAAGCTCTCTAAAGTAGAAGGCAAAATTTGTCGTAGACTTTTA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCTTTTAAGCTCTCTAAAGTAGAACGCAAAATTTGTCGTAGACTTTTA  950

seq1  AATCCCCTGCTTTGCTCAAACAAACCTTAGTCTTTTCCATCACTGTGCAG  1000
      |||||||||||||||||||   |||||||||||||| |||||||||||||
seq2  AATCCCCTGCTTTGCTCAA--CAACCTTAGTCTTTT-CATCACTGTGCAG  997

seq1  ATCTCTGTCCAACCTAATGGGTAATACATAATATTTTAATGACGAATCTT  1050
      |||||||| ||||   |||||||||||||||||||||||||||||||| |
seq2  ATCTCTGT-CAAC--TATGGGTAATACATAATATTTTAATGACGAATC-T  1043

seq1  AAAGAGCTTTGATCCACTTAAAAATACTTCCTATCTCTTAACCTCTTTCC  1100
      ||||||||||||| ||| ||||||||||| ||||||||||  |||||  |
seq2  AAAGAGCTTTGAT-CAC-TAAAAATACTT-CTATCTCTTA--CTCTT--C  1086

seq1  ATTGCAAGATAAGCCTTTGGTGGTAGCTGACATATAAATGCATTCCCATT  1150
      | ||||| || |||  |||| ||||||||||||   |||||||| |||||
seq2  A-TGCAAAAT-AGC--TTGGGGGTAGCTGACAT---AATGCATT-CCATT  1128

seq1  ACATC-TGAAGTGGTACCACTGGACAGTCAATCTTAACTGATATCAGCCT  1199
      ||||| || || | || |  |||  |||||| ||| ||||  ||||| | 
seq2  ACATCTTGGAGGGTTAACCATGG--AGTCAA-CTT-ACTGTAATCAGGCC  1174

seq1  TAATTCCAGTGGCTTTTTCTGCTCACTTAGATTCTTATGTGAATCAGTGG  1249
      ||| ||||     |  ||| | |||    ||||    | |||||||| ||
seq2  TAA-TCCA-----TGCTTCCG-TCA---TGATT----TATGAATCAG-GG  1209

seq1  GTCCTCAC  1257
      || |||||
seq2  GT-CTCAC  1216

seq1: chr5_51490767_51490979
seq2: B6Ng01-012E19.g_72_284 (reverse)

seq1  ACATTCTACATCTTCCCCCACCCCCAGCTACTCTTAGCTGATGAATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTACATCTTCCCCCACCCCCAGCTACTCTTAGCTGATGAATATTT  50

seq1  ATCCCACCATAGTGAGCCTCCTTGTCCTTCCACTCTCAAGGCGACCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCATAGTGAGCCTCCTTGTCCTTCCACTCTCAAGGCGACCAATC  100

seq1  CCTTTGCTCTCATCAGTACACACCCCACAGTACATCTGTCTCCTCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCTCATCAGTACACACCCCACAGTACATCTGTCTCCTCTTCTA  150

seq1  AGGCAAAAATCTCTTCACTTGGATCATGATTTTTCTCTCTGTCCCACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAATCTCTTCACTTGGATCATGATTTTTCTCTCTGTCCCACACT  200

seq1  TCACATTCTCAAA  213
      |||||||||||||
seq2  TCACATTCTCAAA  213