BAC Information

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BAC

Clone NameB6Ng01-012H13
Chromosome5 (Build37)
Map Location 135,643,171 - 135,735,483
singlet/doubletdoublet
Overlap geneBcl7b, LOC100040069, Baz1b, Fzd9
Upstream geneWbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2
Downstream geneFkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012H13.bB6Ng01-012H13.g
ACCDH847557DH847558
length536856
definitionDH847557|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H13, 5' end.DH847558|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,643,171 - 135,643,712)(135,734,631 - 135,735,483)
sequence
actctgtagaccaggctggccttgaactcagaaatccacctgcctcttcc
gccagagtgctgggataaatgtgttcatcacagtccctggtccagaagtt
ctttcaaaagagaaatatttatgtcctcagtacttggtccaatgcacaga
acacaggcaatgttttatccagaactgaattccctgacagtgaagtggaa
tgctaaaagtatgagccaggtgcaaaatactcaggaagagccgcagtgtg
acctggatgttggaaaagtagttgattcaatcagaagaaatttccaggtg
ggtagctgaaaattctaagaccagaagtcaaaatgaaggaaggcgtgata
atgactccgtaacacagctatttagacaatgatgacacagatctcctttt
aggtgaacatgctgcgcataagtaattccttgaagggtcaggggtcatgg
gggattaaatgacttgataacagcctaaaacccactagtgaaaaccaact
tctacatattgttctctgtgctatatacatgtaaag
gaattcagtctctgtactggctagttttgtgtcaacttgacacagctgga
gttatcacagagaaaggaatttcagttgaagaaatgcctccatgagatcc
aactgtaaggcattttctcaattagtgatcaagggggaaagaccccttgt
gggtgggaccatctctgggctggtagtcttggttctataagagagcaggc
tgagcaagccaggtgaagcaagccagtaagtagcacctcttcatggcctc
tgcatcagctcctgcctccaagttcctgtcctgtgtgagttcctgtcctg
acttcctttggtgatgaacagcaatgtagtcaagaaagtgagctcagtag
atcatgaacttctaaaattctgaccaccgggacttaggagcaaaaatgac
agcattttgctgtggtgtgtattttgatgttggactacacaatttcttaa
tcaggaatagaatccctgactaaaacagtctctgaatttacaacttagat
caacccctagcaccataactgcccagactagattggaaagatggggctcg
ggacagtggagttcgtccatctgaggggtgacttcctgcagctggccagg
caagctggagagagctttataaagccaagaaccccagccagaccctggca
aatgtccccgggacaagatgaggcctggcaaaggctgggtgcccctccca
cctggttgacccccccccggggggggggggctgctatttgcaccccatag
gagagttggtgtcttgcagggagaaactgctaattggactatagctctag
aggattcccctcagccctcagggtctgtggggtaattcctgagggcctcc
gggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135643171_135643712
seq2: B6Ng01-012H13.b_48_589

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  50

seq1  TCTTCCGCCAGAGTGCTGGGATAAATGTGTTCATCACAGTCCCTGGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGCCAGAGTGCTGGGATAAATGTGTTCATCACAGTCCCTGGTCCA  100

seq1  GAAGTTCTTTCAAAAGAGAAATATTTATGTCCTCAGTACTTGGTCCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTTTCAAAAGAGAAATATTTATGTCCTCAGTACTTGGTCCAATG  150

seq1  CACAGAACACAGGCAATGTTTTATCCAGAACTGAATTCCCTGACAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACACAGGCAATGTTTTATCCAGAACTGAATTCCCTGACAGTGAA  200

seq1  GTGGAATGCTAAAAGTATGAGCCAGGTGCAAAATACTCAGGAAGAGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGCTAAAAGTATGAGCCAGGTGCAAAATACTCAGGAAGAGCCGC  250

seq1  AGTGTGACCTGGATGTTGGAAAAGTAGTTGATTCAATCAGAAGAAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACCTGGATGTTGGAAAAGTAGTTGATTCAATCAGAAGAAATTTC  300

seq1  CAGGTGGGTAGCTGAGAATTCGAAGACCAGAAGTCAAAATGAAGGAAGGT  350
      ||||||||||||||| ||||| ||||||||||||||||||||||||||| 
seq2  CAGGTGGGTAGCTGAAAATTCTAAGACCAGAAGTCAAAATGAAGGAAGGC  350

seq1  GTGATAATGACTCCGGAACACAGCTATTTAGACAATGATGACACAGATCT  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGATAATGACTCCGTAACACAGCTATTTAGACAATGATGACACAGATCT  400

seq1  CCTTTTAGGTGAACATGCAGCGCATAAATAATTCCTTGAAGGGTCAGGGG  450
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CCTTTTAGGTGAACATGCTGCGCATAAGTAATTCCTTGAAGGGTCAGGGG  450

seq1  TCATGGGGGATTAAAGGACTTGATAACAGCCTAAAACTCACTAGTGAAAA  500
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TCATGGGGGATTAAATGACTTGATAACAGCCTAAAACCCACTAGTGAAAA  500

seq1  CCAACTTCTACAAATTGTCCTCTGTGCCATATACATGTAAAG  542
      |||||||||||| ||||| |||||||| ||||||||||||||
seq2  CCAACTTCTACATATTGTTCTCTGTGCTATATACATGTAAAG  542

seq1: chr5_135734631_135735483
seq2: B6Ng01-012H13.g_66_921 (reverse)

seq1  CTGCCCGGAGGCCC-CAGGGATT-GCCCACAGGCCCTGAGGGCTGAGGGG  48
      |||||||||||||| |||| |||  ||||||| |||||||||||||||||
seq2  CTGCCCGGAGGCCCTCAGGAATTACCCCACAGACCCTGAGGGCTGAGGGG  50

seq1  AGTCCTCTAGGCCTATAGTCC-ATTAGCAGTCTCTCCCTGCAAGACACCA  97
      | ||||||||  ||||||||| ||||||||| ||||||||||||||||||
seq2  AATCCTCTAGAGCTATAGTCCAATTAGCAGTTTCTCCCTGCAAGACACCA  100

seq1  ACTCTCCTCTGGGGTGGCAAATAGCAG-CCCCCCCCCCCGGGGGGGGGTC  146
      |||||||| |||||| ||||||||||| ||||||||||||||||||||||
seq2  ACTCTCCTATGGGGT-GCAAATAGCAGCCCCCCCCCCCCGGGGGGGGGTC  149

seq1  AACCAGGTGGGAGGGGCACCCAGCCTTTGCCAGGCCTCATCTTGTCCCGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGTGGGAGGGGCACCCAGCCTTTGCCAGGCCTCATCTTGTCCCGG  199

seq1  GGACATTTGCCAGGGTCTGGCTGGGGTTCTTGGCTTTATAAAGCTCTCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTGCCAGGGTCTGGCTGGGGTTCTTGGCTTTATAAAGCTCTCTC  249

seq1  CAGCTTGCCTGGCCAGCTGCAGGAAGTCACCCCTCAGATGGACGAACTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCTGGCCAGCTGCAGGAAGTCACCCCTCAGATGGACGAACTCC  299

seq1  ACTGTCCCGAGCCCCATCTTTCCAATCTAGTCTGGGCAGTTATGGTGCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCGAGCCCCATCTTTCCAATCTAGTCTGGGCAGTTATGGTGCTA  349

seq1  GGGGTTGATCTAAGTTGTAAATTCAGAGACTGTTTTAGTCAGGGATTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGATCTAAGTTGTAAATTCAGAGACTGTTTTAGTCAGGGATTCTA  399

seq1  TTCCTGATTAAGAAATTGTGTAGTCCAACATCAAAATACACACCACAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATTAAGAAATTGTGTAGTCCAACATCAAAATACACACCACAGCA  449

seq1  AAATGCTGTCATTTTTGCTCCTAAGTCCCGGTGGTCAGAATTTTAGAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGTCATTTTTGCTCCTAAGTCCCGGTGGTCAGAATTTTAGAAGT  499

seq1  TCATGATCTACTGAGCTCACTTTCTTGACTACATTGCTGTTCATCACCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTACTGAGCTCACTTTCTTGACTACATTGCTGTTCATCACCAA  549

seq1  AGGAAGTCAGGACAGGAACTCACACAGGACAGGAACTTGGAGGCAGGAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCAGGACAGGAACTCACACAGGACAGGAACTTGGAGGCAGGAGC  599

seq1  TGATGCAGAGGCCATGAAGAGGTGCTACTTACTGGCTTGCTTCACCTGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGAGGCCATGAAGAGGTGCTACTTACTGGCTTGCTTCACCTGGC  649

seq1  TTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGT  699

seq1  CCCACCCACAAGGGGTCTTTCCCCCTTGATCACTAATTGAGAAAATGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACAAGGGGTCTTTCCCCCTTGATCACTAATTGAGAAAATGCCT  749

seq1  TACAGTTGGATCTCATGGAGGCATTTCTTCAACTGAAATTCCTTTCTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGGATCTCATGGAGGCATTTCTTCAACTGAAATTCCTTTCTCTG  799

seq1  TGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGAGAC  849

seq1  TGAATTC  853
      |||||||
seq2  TGAATTC  856