BAC Information

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BAC

Clone NameB6Ng01-012J03
Chromosome6 (Build37)5 (Build37)
Map Location 18,835,442 - 18,835,96810,949,375 - 10,949,788
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J03.bB6Ng01-012J03.g
ACCDH847627DH847628
length961408
definitionDH847627|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J03, 5' end.DH847628|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(10,949,375 - 10,949,788)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggatagataaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatctattcgc
attcttctacacaataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaatggagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagtagagtcacgccagatatttatattatttgt
gactatgagaa
agggatagaggcagtagagagtgagttcccagcatgcatttggaaagcac
ttgacaggatgtggctttgtaaggttctacgtgatttgagtgtatggtga
gtgtttatacttgcctggcaggtgcctgagtgcttagaagctccttgtag
tatctagagtggcctggtcccacataatccttctcagtgtatatctagaa
ggcctgaggctcattcctgttcctctttgttgccttatactgcaagacag
taatgctgcatacatttcttttgcatcgcattgtgctctctgtttctgtc
tgtgtctctcattctttgtttccttttctcctctgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgttcaagtgtgtgagtgtgttcaagtgtgtgaga
ctgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-012J03.b_44_571 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||  |||||||||||| |||| |||||||||||||||
seq2  ACAACTGGTTGTTATTGTGTAGAAGAATGCGAATAGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTATCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr5_10949375_10949788
seq2: B6Ng01-012J03.g_64_477

seq1  GAATTCAGGGATAGAGGCAGTAGAGAGTGAGTTCCCAGCATGCATTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATAGAGGCAGTAGAGAGTGAGTTCCCAGCATGCATTTGGA  50

seq1  AAGCACTTGACAGGATGTGGCTTTGTAAGGTTCTACGTGATTTGAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTGACAGGATGTGGCTTTGTAAGGTTCTACGTGATTTGAGTGTA  100

seq1  TGGTGAGTGTTTATACTTGCCTGGCAGGTGCCTGAGTGCTTAGAAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTGTTTATACTTGCCTGGCAGGTGCCTGAGTGCTTAGAAGCTCC  150

seq1  TTGTAGTATCTAGAGTGGCCTGGTCCCACATAATCCTTCTCAGTGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTATCTAGAGTGGCCTGGTCCCACATAATCCTTCTCAGTGTATAT  200

seq1  CTAGAAGGCCTGAGGCTCATTCCTGTTCCTCTTTGTTGCCTTATACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGCCTGAGGCTCATTCCTGTTCCTCTTTGTTGCCTTATACTGCA  250

seq1  AGACAGTAATGCTGCATACATTTCTTTTGCATCGCATTGTGCTCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAATGCTGCATACATTTCTTTTGCATCGCATTGTGCTCTCTGTT  300

seq1  TCTGTCTGTGTCTCTCATTCTTTGTTTCCTTTTCTCCTCTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTCTCTCATTCTTTGTTTCCTTTTCTCCTCTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTGTGTTCAAGTGTGTGAGTGTGTTCAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTTCAAGTGTGTGAGTGTGTTCAAGTGT  400

seq1  GTGAGACTGTGTGT  414
      ||||||||||||||
seq2  GTGAGACTGTGTGT  414