BAC Information

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BAC

Clone NameB6Ng01-012J22
Chromosome5 (Build37)
Map Location 18,071,331 - 18,072,337
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J22.bB6Ng01-012J22.g
ACCDH847665DH847666
length1,203816
definitionDH847665|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J22, 5' end.DH847666|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaaggaagttacctattcagtaactaattagcattacaaagg
accaagcaggaatggctcagggctagtctgcagagagtttacttgaggta
gtaatcagtctaacccaaacacaatggcctagtgaataggtgggtttacc
atgagaaaagttagggaatcccactgagacaggtttcttcactaggccca
aagaaatcaggcagaactatagagcataaataaattttatgcctcagtcc
agctttttttttttaaatattaataacagggaggaaattgtaacctctcc
caagcctgaagcaggctgagctagaccttgatcttgctaccactcaggag
attacctagggtagagccttcctccctagttcactctattgttcagccac
tgtctctgttcctcttcaagatactgctacctttggggaagctgccgagc
tattccagagactacatcctatcctgcatgtcatcacctgaagctggttc
caagctccaagaatgaattggtgggaacgggcctctccccccacctcctt
tataagtgcattctccattaaacatttgagccttggttaggaacctggtc
ttggctccatttttctcgcccacctaattctcctctcttttcaggcctgg
tttgcctcccaggtgaaaccccgtttcttgtgagctgctggttggtttcc
aacattttggtatttttgttaactaacatcaccatggatttattcagtag
cctatgttagacatatagaggcatctttgattttttcccttcttcttact
ctttcaatcaaccattggtcaaatcagtatagtccacctccatatatttt
ttaatgctttgatcttccatctctgagacaactttaattgtagaagtaac
ttctatttgcctgatgtaactgtcatcttagagacttactactgaataag
ctcacctttttctagctctttctgaactttggctggctgattcaaatcag
ttgttttggctcaaactcctcttcagtgctgcctgattcaaactggcttc
tgtctaattgaattgctttgcttggcaaaactgctctggtacttgttcta
tatttctgactcataggtctctgataactgcttttgatacctgcattgaa
ctgcttgaattcaccgaagaccaatccaatgcatgacttgctacactgat
ccc
gaattctttgtttagctctgtaccccatttttaatagagttatttgattc
tctggagtctcacttcttgagttctttgtatatatcggatattagcccca
tatcagatttaggattggtaaaaatcttttcccaatttgttggttgcttt
tttttttattaacactgtcctttgtcttacagaaactttgcgattttatg
aggtcccatttggaaattcttgatcttacagcacatgccattagtattct
gtttaggaatttttcccctgtgcccatatcttcaaggttcttccccactt
tctcctgtatatgtttcggagcaaagactgaaggaatgaccatccagaga
ctgccccaccagaggatccatcccataaaaaagcaccagtcccagacact
attgcagatgcccacaagtgttaggtgacaggagcctgataaggctgtct
cctcaaatgctttgccagtgcctgacaaacacagaagtggatgctcacag
ccatccattggacagagcacagggtctccaatgaaggtgctacagaaact
acccaaggagctgaaggggtttgaagcctcataggaggaacaacaatatg
aactatccagtaccctcagagctccctggaactaaaccaccaatcaaaga
aaacattggacttatggctctacctgaatatgtagcaaagaatgtctaag
tcagtcatcaatgagaggagagagccttggccctgtgaaggttctatgct
ccagtataggggaatgccagggccaggaagcagaagtgggtaggttgggg
agcaggggggaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18071331_18072337
seq2: B6Ng01-012J22.b_257_1251

seq1  AGGCAGAACTATAGAGCATAAATAAATTTTATGCCTCAGTCCAGCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAACTATAGAGCATAAATAAATTTTATGCCTCAGTCCAGCTTTTT  50

seq1  TTTTTTAAATATTAATAACAGGGAGGAAATTGTAACCTCTCCCAAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATATTAATAACAGGGAGGAAATTGTAACCTCTCCCAAGCCTG  100

seq1  AAGCAGGCTGAGCTAGACCTTGATCTTGCTACCACTCAGGAGATTACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTGAGCTAGACCTTGATCTTGCTACCACTCAGGAGATTACCTA  150

seq1  GGGTAGAGCCTTCCTCCCTAGTTCACTCTATTGTTCAGCCACTGTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGCCTTCCTCCCTAGTTCACTCTATTGTTCAGCCACTGTCTCTG  200

seq1  TTCCTCTTCAAGATACTGCTACCTTTGGGGAAGCTGCCGAGCTATTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCAAGATACTGCTACCTTTGGGGAAGCTGCCGAGCTATTCCAG  250

seq1  AGACTACATCCTATCCTGCATGTCATCACCTGAAGCTGGTTCCAAGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACATCCTATCCTGCATGTCATCACCTGAAGCTGGTTCCAAGCTCC  300

seq1  AAGAATGAATTGGTGGGAACGGGCCTCTCCCCCCACCTCCTTTATAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTGGTGGGAACGGGCCTCTCCCCCCACCTCCTTTATAAGTG  350

seq1  CATTCTCCATTAAACATTTGAGCCTTGGTTAGGAACCTGGTCTTGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCATTAAACATTTGAGCCTTGGTTAGGAACCTGGTCTTGGCTCC  400

seq1  ATTTTTCTCGCCCACCTAATTCTCCTCTCTTTTCAGGCCTGGTTTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCGCCCACCTAATTCTCCTCTCTTTTCAGGCCTGGTTTGCCTC  450

seq1  CCAGGTGAAACCCCGTTTCTTGTGAGCTGCTGGTTGGTTTCCAACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAAACCCCGTTTCTTGTGAGCTGCTGGTTGGTTTCCAACATTTT  500

seq1  GGTATTTTTGTTAACTAACATCACCATGGATTTATTCAGTAGCCTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTGTTAACTAACATCACCATGGATTTATTCAGTAGCCTATGTT  550

seq1  AGACATATAGAGGCATCTTTGATTTTTTCCCTTCTTCTTACTCTTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATAGAGGCATCTTTGATTTTTTCCCTTCTTCTTACTCTTTCAAT  600

seq1  CAACCATTGGTCAAATCAGTATAGTCCACCTCCATATATTTTTTAATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTGGTCAAATCAGTATAGTCCACCTCCATATATTTTTTAATGCT  650

seq1  TTGATCTTCCATCTCTGAGACAACTTTAATTGTAGAAGTAACTTCTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTCCATCTCTGAGACAACTTTAATTGTAGAAGTAACTTCTATTT  700

seq1  GCCTGATGTAACTGTCATCTTAGAGACTTACTACTGAATAAGCTCACC-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCTGATGTAACTGTCATCTTAGAGACTTACTACTGAATAAGCTCACCTT  750

seq1  TTTCTAGCTCTTTCTGAACTTTGGCTGGCTGATTCAAATCAGTTGTTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCTCTTTCTGAACTTTGGCTGGCTGATTCAAATCAGTTGTTTTG  800

seq1  GCTCAAACTCCTC-TCAGTGCTGCCTGATTCAAACTGGCTTCTGTCTAAA  848
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GCTCAAACTCCTCTTCAGTGCTGCCTGATTCAAACTGGCTTCTGTCT-AA  849

seq1  TTGAATTGCTTTGCTTGGCAAAAACTGCCTCTGGTACTTTGTTCTAATAT  898
      ||||||||||||||||||| ||||||| ||||||||| ||||||||   |
seq2  TTGAATTGCTTTGCTTGGC-AAAACTG-CTCTGGTAC-TTGTTCTATATT  896

seq1  TCTGACTCATAGTTCTCTGGTTTTAACTGCTTTTGAGTACCTGCATTGAA  948
      |||||||||||| ||||||    ||||||||||||| |||||||||||||
seq2  TCTGACTCATAGGTCTCTG---ATAACTGCTTTTGA-TACCTGCATTGAA  942

seq1  CTGCTTGAATTCACAGAAGAACCCAATTCCATTGCCATGTACTTGCTACA  998
      |||||||||||||| |||||  |||| |||| || |||| ||||||||||
seq2  CTGCTTGAATTCACCGAAGA--CCAA-TCCAATG-CATG-ACTTGCTACA  987

seq1  CTGACTCCC  1007
      |||| ||||
seq2  CTGA-TCCC  995