BAC Information

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BAC

Clone NameB6Ng01-012M15
Chromosome5 (Build37)
Map Location 148,329,768 - 148,482,679
singlet/doubletdoublet
Overlap genePan3, Flt1
Upstream geneLOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012M15.bB6Ng01-012M15.g
ACCDH847779DH847780
length1,0991,126
definitionDH847779|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M15, 5' end.DH847780|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,329,768 - 148,330,877)(148,481,520 - 148,482,679)
sequence
gaattctggcctacttcactattaataacagtagaagcagtaggagatac
tgggttgggaatttgaagttggcttgagtttgagtcttggctttgctgtt
gacattgtacatgtgtttggtaaagtgacataaactgcatctaagttctg
actggtaggtgcttggagactcagatgccatccttgtgatgaggctttag
aagtgctaagtgctcaccagagacaggaggtctcttcttagttttaagct
cagttttgtttaccttattttctaaaagcaaagtcttgatgttttatgag
acactattgaaaaatatcccactaataatagctctatagccaaaggtatt
ttgctagtccctcttcccccaattgtgtagatttttagacattccccaaa
taggaaatggttcctgtacaagtgttacttgtagctagatcttctgcttc
atctctgctcaaacaagccacctcccttaaacttgagactaacttcacct
ggttttaaataatttgcattgtatctgcatttatgcatgcagttttcagt
gtaaattttgtttgagtgttttggaaatcattttatgcttttatatgtga
cttggtcttactttactttctcatctggcattgaatagtccaaagggtaa
aaatactggttctcccttctccacacatctgtgatagagtccattgttca
cgtggcattttgttgacagtggttgagtgacttgcacttggacatacatc
tgcaacagttccagatgtttagtgtacatctggagttgcagacaggtgtc
aaaacaggacttgcttagagatttggtgcttacactgccactgtgtattt
tagcatagtcccaaccattttttccccaagaaattttgctgttcatgttt
cgctgaaggaatttagtagccgttattatttgatttttaatatttgcata
attgtgtcatttgggtagtaatacattttaagactggaggaagagctgtt
caggagtctcagttctggtagtttcatgatttcattaactaaatttgtat
ctcgggtgattcttacagtatgttagaaagtctgtgtttgtcaaagaga
gaattctaagagtaactatgttagaaaaaaattcagttctgaggtcagga
cactgtagtatgagtttggggttgaatgaggctcatgaaatgaaacgagg
gggcccaggtggatgccgtgtgtagcgcctctctttttgatctctgcggt
gtgcgatctttctcccattctgtgaaggatgttcaggaggtcctggaaag
atgtcttactcctttgagaaaaaaaaaaaaaaacattgcaagactcagaa
gtattgccttaaatctttcttgactatttgaattatccttttaaagtcat
cttactatttatttttaactttaacaattgacaagctagacatgtgagat
agatagtgcctactatccttgattccttccttgaatcaggaagtgtctgc
tatgcttatttttgagttacatatttgcatggtagtctctatgcatgatc
ttcaattataaaaatgcctaatatttcagaatgattatacatatatgtaa
tagttatatatgtgcagaataattattagtgcttaaatctgagactctaa
ttcaatatctacagctcaaggcctagtttattttggtgtcccaacattat
taattgtatttccatgaccagccacttaatacagacaagttaataaaaaa
agagagattcagaccacttgaatttcagcatttcctagaatctgacaaat
attttaaaacttcagaactccaatggacctaaaatttcttagttaaaata
tggcgcacgcctttaatcccagcacttgggaggcagaggcaggcagattt
ctgagttcgaggctagcctggtctacaaagtgagttccaggacagccagg
gctatacagagaatctctgtctcgaaaaacaaaacaatcaaataaaaaaa
ttgataaatagttgatacaaatgaacttgtttcaactgagtaatactgtg
gttttgtttcccctgtaatcatctaataaagcattagtaatatgtctgtg
ctaatacacagtagcatagctataaatacagcacatgtctaaatgcagaa
gacgatgaagaactcagcatacgaccaatatgaaaatgttgagaaatgcc
tgttaacctaacaatgtgtacaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148329768_148330877
seq2: B6Ng01-012M15.b_46_1144

seq1  GAATTCTGGCCTACTTCACTATTAATAACAGTAGAAGCAGTAGGAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCTACTTCACTATTAATAACAGTAGAAGCAGTAGGAGATAC  50

seq1  TGGGTTGGGAATTTGAAGTTGGCTTGAGTTTGAGTCTTGGCTTTGCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGGAATTTGAAGTTGGCTTGAGTTTGAGTCTTGGCTTTGCTGTT  100

seq1  GACATTGTACATGTGTTTGGTAAAGTGACATAAACTGCATCTAAGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTACATGTGTTTGGTAAAGTGACATAAACTGCATCTAAGTTCTG  150

seq1  ACTGGTAGGTGCTTGGAGACTCAGATGCCATCCTTGTGATGAGGCTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGGTGCTTGGAGACTCAGATGCCATCCTTGTGATGAGGCTTTAG  200

seq1  AAGTGCTAAGTGCTCACCAGAGACAGGAGGTCTCTTCTTAGTTTTAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAAGTGCTCACCAGAGACAGGAGGTCTCTTCTTAGTTTTAAGCT  250

seq1  CAGTTTTGTTTACCTTATTTTCTAAAAGCAAAGTCTTGATGTTTTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTTTACCTTATTTTCTAAAAGCAAAGTCTTGATGTTTTATGAG  300

seq1  ACACTATTGAAAAATATCCCACTAATAATAGCTCTATAGCCAAAGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTGAAAAATATCCCACTAATAATAGCTCTATAGCCAAAGGTATT  350

seq1  TTGCTAGTCCCTCTTCCCCCAATTGTGTAGATTTTTAGACATTCCCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTCCCTCTTCCCCCAATTGTGTAGATTTTTAGACATTCCCCAAA  400

seq1  TAGGAAATGGTTCCTGTACAAGTGTTACTTGTAGCTAGATCTTCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGGTTCCTGTACAAGTGTTACTTGTAGCTAGATCTTCTGCTTC  450

seq1  ATCTCTGCTCAAACAAGCCACCTCCCTTAAACTTGAGACTAACTTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCTCAAACAAGCCACCTCCCTTAAACTTGAGACTAACTTCACCT  500

seq1  GGTTTTAAATAATTTGCATTGTATCTGCATTTATGCATGCAGTTTTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAATAATTTGCATTGTATCTGCATTTATGCATGCAGTTTTCAGT  550

seq1  GTAAATTTTGTTTGAGTGTTTTGGAAATCATTTTATGCTTTTATATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTTGTTTGAGTGTTTTGGAAATCATTTTATGCTTTTATATGTGA  600

seq1  CTTGGTCTTACTTTACTTTCTCATCTGGCATTGAATAGTCCAAAGGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTACTTTACTTTCTCATCTGGCATTGAATAGTCCAAAGGGTAA  650

seq1  AAATACTGGTTCTCCCTTCTCCACACATCTGTGATAGAGTCCATTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGGTTCTCCCTTCTCCACACATCTGTGATAGAGTCCATTGTTCA  700

seq1  CGTGGCATTTTGTTGACAGTGGTTGAGTGACTTGCACTTGGACATACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCATTTTGTTGACAGTGGTTGAGTGACTTGCACTTGGACATACATC  750

seq1  TGCAACAGTTCCAGATGTTTAGTGTACATCTGGAGTTGCAGACAGGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTTCCAGATGTTTAGTGTACATCTGGAGTTGCAGACAGGTGTC  800

seq1  AAAACAGGACTTGCTTAGAGATTTGGTGCTTACACTGCCACTGTGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGACTTGCTTAGAGATTTGGTGCTTACACTGCCACTGTGTATTT  850

seq1  TAGCATAGTCCCAACCATTTTTTCCCCAAGAAATTTTGCTGTTCATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGTCCCAACCATTTTTTCCCCAAGAAATTTTGCTGTTCATGTTT  900

seq1  CGCTGAAGGAATTTAGTAGGCCGTTATTATTTGAATTTTTAATATTTGCA  950
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CGCTGAAGGAATTTAGTA-GCCGTTATTATTTG-ATTTTTAATATTTGCA  948

seq1  TAATTGTGTCATTTGGGTAGTAATAACAATTTTTAAAGACTGAGGAAAGA  1000
      |||||||||||||||||||||||| |||   ||| |||||||  | ||||
seq2  TAATTGTGTCATTTGGGTAGTAAT-ACA---TTTTAAGACTGGAGGAAGA  994

seq1  GCTGTTCAAGAGTCTCAGTTCTGGTAGTTTTCATGATTTCATTAAACTAA  1050
      |||||||| |||||||||||||||||| |||||||||||||||||   ||
seq2  GCTGTTCAGGAGTCTCAGTTCTGGTAG-TTTCATGATTTCATTAACTAAA  1043

seq1  TTTGTTAATCTCGGGTGATTCTTACAGTAGTGTTAGGAGAAGTCTGTG-T  1099
      |||||  |||||||||||||||||||||| ||||||   ||||||||| |
seq2  TTTGT--ATCTCGGGTGATTCTTACAGTA-TGTTAG--AAAGTCTGTGTT  1088

seq1  TGTCAAAGAGA  1110
      |||||||||||
seq2  TGTCAAAGAGA  1099

seq1: chr5_148481520_148482679
seq2: B6Ng01-012M15.g_68_1193 (reverse)

seq1  CACTCGTACACATTGTATCATGTTTAAACATAGCCATCTCTTCAAACATT  50
      |||| ||||||||||  | | |||  |||  || ||| |||   ||||||
seq2  CACTTGTACACATTG--TTAGGTT--AAC--AGGCATTTCT--CAACATT  42

seq1  TCTCATCTATTTGTGTCACTAATGCTGAGTATCCTTTCATCGGTCTTCTT  100
      | |||  |||| ||    |  ||||||||| ||  |||||| |||||| |
seq2  T-TCA--TATTGGT----CGTATGCTGAGT-TC--TTCATC-GTCTTC-T  80

seq1  GCATTATAGAACATGTGGCTGTTATTTATAGCTATGCTACTGTGTAATAG  150
      ||||| ||| |||||| |||| |||||||||||||||||||||||| |||
seq2  GCATT-TAG-ACATGT-GCTG-TATTTATAGCTATGCTACTGTGTATTAG  126

seq1  GCCACCAGGACATATTACAAATGCTTTATAAGAATGAATTACAGGGGAAA  200
        ||    |||||||||| |||||||||| || ||| |||||||||||||
seq2  CACA----GACATATTACTAATGCTTTATTAG-ATG-ATTACAGGGGAAA  170

seq1  CAAAAACCACAGTATTACTCAGTTGAAACAAAGTTCATTTGTATCAACTA  250
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  C-AAAACCACAGTATTACTCAGTTGAAAC-AAGTTCATTTGTATCAACTA  218

seq1  TTTTATCAATTTTTTTTATTTGTTTGTTTTGTTTTTCGAGACAGGGATTC  300
       |||||||| |||||||||||| ||||||||||||||||||||| |||||
seq2  -TTTATCAA-TTTTTTTATTTGATTGTTTTGTTTTTCGAGACAGAGATTC  266

seq1  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCC  316

seq1  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  366

seq1  GCGTGCGCCATATTTTAACTAAGAAATTTTAGGTCCATTGGAGTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCATATTTTAACTAAGAAATTTTAGGTCCATTGGAGTTCTGAA  416

seq1  GTTTTAAAATATTTGTCAGATTCTAGGAAATGCTGAAATTCAAGTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATATTTGTCAGATTCTAGGAAATGCTGAAATTCAAGTGGTCT  466

seq1  GAATCTCTCTTTTTTTATTAACTTGTCTGTATTAAGTGGCTGGTCATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCTTTTTTTATTAACTTGTCTGTATTAAGTGGCTGGTCATGGA  516

seq1  AATACAATTAATAATGTTGGGACACCAAAATAAACTAGGCCTTGAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTAATAATGTTGGGACACCAAAATAAACTAGGCCTTGAGCTGT  566

seq1  AGATATTGAATTAGAGTCTCAGATTTAAGCACTAATAATTATTCTGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGAATTAGAGTCTCAGATTTAAGCACTAATAATTATTCTGCACA  616

seq1  TATATAACTATTACATATATGTATAATCATTCTGAAATATTAGGCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTATTACATATATGTATAATCATTCTGAAATATTAGGCATTTT  666

seq1  TATAATTGAAGATCATGCATAGAGACTACCATGCAAATATGTAACTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGAAGATCATGCATAGAGACTACCATGCAAATATGTAACTCAAA  716

seq1  AATAAGCATAGCAGACACTTCCTGATTCAAGGAAGGAATCAAGGATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCATAGCAGACACTTCCTGATTCAAGGAAGGAATCAAGGATAGTA  766

seq1  GGCACTATCTATCTCACATGTCTAGCTTGTCAATTGTTAAAGTTAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTATCTATCTCACATGTCTAGCTTGTCAATTGTTAAAGTTAAAAAT  816

seq1  AAATAGTAAGATGACTTTAAAAGGATAATTCAAATAGTCAAGAAAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAGATGACTTTAAAAGGATAATTCAAATAGTCAAGAAAGATTT  866

seq1  AAGGCAATACTTCTGAGTCTTGCAATGTTTTTTTTTTTTTTTCTCAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATACTTCTGAGTCTTGCAATGTTTTTTTTTTTTTTTCTCAAAGG  916

seq1  AGTAAGACATCTTTCCAGGACCTCCTGAACATCCTTCACAGAATGGGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACATCTTTCCAGGACCTCCTGAACATCCTTCACAGAATGGGAGA  966

seq1  AAGATCGCACACCGCAGAGATCAAAAAGAGAGGCGCTACACACGGCATCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGCACACCGCAGAGATCAAAAAGAGAGGCGCTACACACGGCATCC  1016

seq1  ACCTGGGCCCCCTCGTTTCATTTCATGAGCCTCATTCAACCCCAAACTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCCCCTCGTTTCATTTCATGAGCCTCATTCAACCCCAAACTCA  1066

seq1  TACTACAGTGTCCTGACCTCAGAACTGAATTTTTTTCTAACATAGTTACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAGTGTCCTGACCTCAGAACTGAATTTTTTTCTAACATAGTTACT  1116

seq1  CTTAGAATTC  1160
      ||||||||||
seq2  CTTAGAATTC  1126