BAC Information

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BAC

Clone NameB6Ng01-012M23
Chromosome5 (Build37)6 (Build37)
Map Location 18,084,511 - 18,084,57727,418,660 - 27,419,767
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012M23.bB6Ng01-012M23.g
ACCDH847793DH847794
length9531,095
definitionDH847793|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M23, 5' end.DH847794|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(27,418,660 - 27,419,767)
sequence
gaattctcaactgaggaatactgaagggctaagaagcacttgaaaaactt
ttcaacatccttaatcatcaaggaaatgaaaatcaaaacaatcctgagat
tccacctcacaccagtcaaaatggctaggttcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaatactcctccattactggtg
ggattgcaagattgtacaaccacttagaaatcagtctggcggttcctcag
aaaaccggacatagtactataggtagatccagcaatacctctgggcatat
acccaaaaggtgttccaactggtaatgagtacacatgctccactatgttc
atatcagccctatttataatagcctgaagctggaaagaacccagatgtcc
ctcaacagaggaatcgatacacaaaatgtggtacatttacacaatggagt
actactcagctattaaaaacaacgaatttatgaaattcttgtgcaattgg
atgtatctggaggatatcatcctgagtgaggtaacccaattacaaaagaa
gtgacttgatacacattcactgataagtggatattagcccagaaacctag
aatacccaagatacaacttccaaaacacaagaaaatgaagaaggaagacc
aactcatggatacttcattactccctagaatagggaataaaatacccatg
gacggaattacagagaaaaagtttggagctaagatgaaaggttggatcat
ccagagactgcctcacccgggggtccatcccataatcagccgccaaacac
agatactattgcatatgctagcaagattttgctgaaaggaccctgatata
gctgtctcctgtgaggtttttccagtacctggcgaatacagaagtggatg
ctcacagtcatctataggatgaaacacaggagccccaatgtagagctaga
gaa
gaattcattgtgtttcagagcctttaaggaggctgacaggactcaagcta
aagcacactgttcagcacagagaatcaggctttccctcggggcttctttg
aatcttctttaaattacctaattacttaccaattgatatatattcagaaa
ccaaccaccaactactttgagtacttatgttgagtgtatgcaggtgtatt
ttaaagggacattgaggagtcagtgtaatggagactttgtggttaaatgg
tatctgctgcttttttatacaagaagacaaacatttccatggtgttattt
tttttctatttaaataaaatatattgctttgatttaccaccagaaaaaaa
tagatacaaaatacctttgactggaaaggtttgtagaatctatccacatt
tttatttgttgggaattgatactgttttgtaaagcttgtctttaagaacc
agctgcttgtcttgagaaatgaatattaaaccacaataatttactatgtc
gccaattgttctattcccatagtggacattagagagaatttggaaattgg
ccacaacttttactacttccatggtagattcaaccttccagaatatagag
gattcaagcaaaagtctgctccaagtgtgagctatgtgctgaaaaggtag
cagtttccatgaggtcttgactaaatagactaatttttccaagtaggaaa
atcatcttttgctgcgtgacttaggggcttagggagacatttctgcctgt
ggaaaacattgccatatggcggtgatatcagacatttttaatccttgaaa
attggatcttaaattcaaaaagccaggagatgatgtgggttctcacactt
ttgtctatattccttccaaaaaatccaaccaaattacgacaagaaaggaa
tgtttattagaaaatatcaaactgctgctaggagaagatttatgtgtaaa
tgtttaaattcaccatatatatattaatatgggatgtaatctgcagaaaa
agttcaaaatgattcgttgtcagatctcagtcaaatttggattagtgcac
tattttgattctatccaaatagcattcatctttgaaatcataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-012M23.b_360_426 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||| |||||||||||||| ||||| ||||||||||||||||||||||| 
seq2  CTTCAGGCTATTATAAATAGGGCTGATATGAACATAGTGGAGCATGTGTA  50

seq1  CTTCTTACCAGTTGGAA  67
      ||  |||||||||||||
seq2  CTCATTACCAGTTGGAA  67

seq1: chr6_27418660_27419767
seq2: B6Ng01-012M23.g_68_1162 (reverse)

seq1  ATTTATGATGTCAAAGATGAATGCTATATTTGATAGAATCAAAAATAGTG  50
      ||||||||| ||||||||||||||||| || ||||||||| |||||||||
seq2  ATTTATGATTTCAAAGATGAATGCTAT-TTGGATAGAATC-AAAATAGTG  48

seq1  CACTAATTCCAAAATTTGACCTTGAGGATTCCTGACAAACGAATCATTTT  100
      |||||||  | |||||||||  ||| |||  ||||| |||||||||||||
seq2  CACTAAT--CCAAATTTGAC--TGA-GAT--CTGAC-AACGAATCATTTT  90

seq1  GAACTTTATCTGCAGAATTACATCCCATATTAATATATTATATGGTTGAA  150
      ||||||| ||||||| ||||||||||||||||||||| ||||||| ||||
seq2  GAACTTTTTCTGCAG-ATTACATCCCATATTAATATA-TATATGG-TGAA  137

seq1  TTTAAACATTTACACATAAATC-TCTCCTAGCAGCAGTTTGATATTTTCT  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTAAACATTTACACATAAATCTTCTCCTAGCAGCAGTTTGATATTTTCT  187

seq1  AATAAACATTCCTTTTCTTGTCGTAATTTGGTTGGATTTTTTGGAAGGAA  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATAAACATTCC-TTTCTTGTCGTAATTTGGTTGGATTTTTTGGAAGGAA  236

seq1  TATAGACAAAAGTGTGAGAACCCACATCATCTCCTGGCTTTTTGAATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAAAAGTGTGAGAACCCACATCATCTCCTGGCTTTTTGAATTTA  286

seq1  AGATCCAATTTTCAAGGATTAAAAATGTCTGATATCACCGCCATATGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATTTTCAAGGATTAAAAATGTCTGATATCACCGCCATATGGCA  336

seq1  ATGTTTTCCACAGGCAGAAATGTCTCCCTAAGCCCCTAAGTCACGCAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCCACAGGCAGAAATGTCTCCCTAAGCCCCTAAGTCACGCAGCA  386

seq1  AAAGATGATTTTCCTACTTGGAAAAATTAGTCTATTTAGTCAAGACCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATTTTCCTACTTGGAAAAATTAGTCTATTTAGTCAAGACCTCA  436

seq1  TGGAAACTGCTACCTTTTCAGCACATAGCTCACACTTGGAGCAGACTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTGCTACCTTTTCAGCACATAGCTCACACTTGGAGCAGACTTTT  486

seq1  GCTTGAATCCTCTATATTCTGGAAGGTTGAATCTACCATGGAAGTAGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATCCTCTATATTCTGGAAGGTTGAATCTACCATGGAAGTAGTAA  536

seq1  AAGTTGTGGCCAATTTCCAAATTCTCTCTAATGTCCACTATGGGAATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGGCCAATTTCCAAATTCTCTCTAATGTCCACTATGGGAATAGA  586

seq1  ACAATTGGCGACATAGTAAATTATTGTGGTTTAATATTCATTTCTCAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGGCGACATAGTAAATTATTGTGGTTTAATATTCATTTCTCAAGA  636

seq1  CAAGCAGCTGGTTCTTAAAGACAAGCTTTACAAAACAGTATCAATTCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCTGGTTCTTAAAGACAAGCTTTACAAAACAGTATCAATTCCCA  686

seq1  ACAAATAAAAATGTGGATAGATTCTACAAACCTTTCCAGTCAAAGGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAAATGTGGATAGATTCTACAAACCTTTCCAGTCAAAGGTATT  736

seq1  TTGTATCTATTTTTTTCTGGTGGTAAATCAAAGCAATATATTTTATTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTATTTTTTTCTGGTGGTAAATCAAAGCAATATATTTTATTTAA  786

seq1  ATAGAAAAAAAATAACACCATGGAAATGTTTGTCTTCTTGTATAAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAAAATAACACCATGGAAATGTTTGTCTTCTTGTATAAAAAAG  836

seq1  CAGCAGATACCATTTAACCACAAAGTCTCCATTACACTGACTCCTCAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATACCATTTAACCACAAAGTCTCCATTACACTGACTCCTCAATG  886

seq1  TCCCTTTAAAATACACCTGCATACACTCAACATAAGTACTCAAAGTAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAAAATACACCTGCATACACTCAACATAAGTACTCAAAGTAGTT  936

seq1  GGTGGTTGGTTTCTGAATATATATCAATTGGTAAGTAATTAGGTAATTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGGTTTCTGAATATATATCAATTGGTAAGTAATTAGGTAATTTA  986

seq1  AAGAAGATTCAAAGAAGCCCCGAGGGAAAGCCTGATTCTCTGTGCTGAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATTCAAAGAAGCCCCGAGGGAAAGCCTGATTCTCTGTGCTGAAC  1036

seq1  AGTGTGCTTTAGCTTGAGTCCTGTCAGCCTCCTTAAAGGCTCTGAAACAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTTTAGCTTGAGTCCTGTCAGCCTCCTTAAAGGCTCTGAAACAC  1086

seq1  AATGAATTC  1108
      |||||||||
seq2  AATGAATTC  1095