BAC Information

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BAC

Clone NameB6Ng01-012N03
Chromosome5 (Build37)
Map Location 71,990,849 - 72,026,309
singlet/doubletdoublet
Overlap geneGabra4
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik
Downstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012N03.bB6Ng01-012N03.g
ACCDH847801DH847802
length9961,096
definitionDH847801|Mus musculus domesticus DNA, BAC clone: B6Ng01-012N03, 5' end.DH847802|Mus musculus domesticus DNA, BAC clone: B6Ng01-012N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,990,849 - 71,991,845)(72,025,200 - 72,026,309)
sequence
gaattcttttcatctaattctgaaatattgatttttctgccttcatttct
cgggtattttagtgtgcccaatttcactgaacaaagtctttctaatagct
tttgttataagtttaatattaatatcataaaattaaaatttgttacctca
aatttcctgcagcttttagacatttatttaaagaaatataccaactgtat
accttagatgcactgtgtcttagcttattcatctatctaccaatttcatc
caattatgcaggaaatctttatgggttttggcaccagtgacctataattc
agtaacaggaaatgtctgctactgtggacattttattgcttctcatttat
aaagcctaacctaagtatggggtttttgacatcaaattaacaaaacattt
gtttaagccagcacattcctactgctgtatttcatattctgccacttttc
caagagactaaacttctgctgtctctgacttccatccaacatcctcaata
tcttttcaaactgtttatctatagttattacagagatgttggtcatgtct
cacctggcttgttgcattgacaatttacattctctgaaccagcatcctgg
tatactctccctctctccactctctactgaaatgaaactcataaaaaata
taatcattgcacttcctatcatgtttcagtggtaccattttgttttgaag
tggaaaatgtatatatttacatatatgtctatgttcagcatgattctgac
cccagtccactgaccccctgcccttccctcccacaagtgctctctcagat
gcccaggttatctgttgtaatatattctgtcagagcatggtatacattta
cttgtctcaccctgcctgtcttgctgaaggtgctctgagcctaggattgg
taaaatggtttgtcaagaaaggtaagaaggaaagtcagtgtataatctca
catacatgtgaacccactgtttaatgtgtgtgtgtgtgtgtgtgtg
gaattcatgatggtaagatgttacaggcttagcttctagtaaggagatac
aatctcacagcaaaacctcctttcctctggcttttacaatctttctgcct
cctcctgtacagtgatcacaaactccagtgccttatgtctcatgccttat
cattttggggagatcgtctttacattaattatgaaacaatgcagtggtct
tctagcagggtgtcttgtgctgattttcccatctgtgcatttggaaacac
atctggaagtaaatatttgtaaatttttggcttagctgtgaatgttcact
ggattctaaataccattctctataaatcccttctggtaaaactgcttatt
ggaaagtttattgtttatttacttactggcttttaaagctgtatctctgt
taactctacttgtacttttgctcatgtttgttgcacttagaaatgcaatc
cacttagcttctctctgcattcattaggtgcaggtacaggtatgaattat
gtttgaaaaaatatatttacgtttatataatttcgtagaaagttatgtat
gccatttccttccaaacttaagctttttatttcatatgtatgtgtgtttg
tgtttttacattttctattttgttgtctttaaataacaagcctagtttct
gctttgaaaatggtgaagattgtgattggatagattgctcagtggggtca
tctgccatggtgggaggataagacctgagttcagatccccagaatgcaca
ggaagagccagcagtggtgacacacacacatggtgtcctagcactgtgta
aacagagatgttctttagccaaccagtcttaaagaaatgctctcaatgat
ctcaaggttcactgacagaccctatattgataaattcattaattaagaca
tatgattcaataaaatgtatgttttttaaattaaaaaaaaaaccaagtaa
gcagctacagaataagtcataccctgtctaagactgaactctgactccac
attaaagtgagccccggaatgcacacacccacaataccgcacaccacaca
ttagccatgcacatgtatatgcaatactaacatgaaaggtatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71990849_71991845
seq2: B6Ng01-012N03.b_45_1040

seq1  GAATTCTTTTCATCTAATTCTGAAATATTGATTTTTCTGCCTTCATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATCTAATTCTGAAATATTGATTTTTCTGCCTTCATTTCT  50

seq1  CGGGTATTTTAGTGTGCCCAATTTCACTGAACAAAGTCTTTCTAATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTATTTTAGTGTGCCCAATTTCACTGAACAAAGTCTTTCTAATAGCT  100

seq1  TTTGTTATAAGTTTAATATTAATATCATAAAATTAAAATTTGTTACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATAAGTTTAATATTAATATCATAAAATTAAAATTTGTTACCTCA  150

seq1  AATTTCCTGCAGCTTTTAGACATTTATTTAAAGAAATATACCAACTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGCAGCTTTTAGACATTTATTTAAAGAAATATACCAACTGTAT  200

seq1  ACCTTAGATGCACTGTGTCTTAGCTTATTCATCTATCTACCAATTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGATGCACTGTGTCTTAGCTTATTCATCTATCTACCAATTTCATC  250

seq1  CAATTATGCAGGAAATCTTTATGGGTTTTGGCACCAGTGACCTATAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGCAGGAAATCTTTATGGGTTTTGGCACCAGTGACCTATAATTC  300

seq1  AGTAACAGGAAATGTCTGCTACTGTGGACATTTTATTGCTTCTCATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGGAAATGTCTGCTACTGTGGACATTTTATTGCTTCTCATTTAT  350

seq1  AAAGCCTAACCTAAGTATGGGGTTTTTGACATCAAATTAACAAAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTAACCTAAGTATGGGGTTTTTGACATCAAATTAACAAAACATTT  400

seq1  GTTTAAGCCAGCACATTCCTACTGCTGTATTTCATATTCTGCCACTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGCCAGCACATTCCTACTGCTGTATTTCATATTCTGCCACTTTTC  450

seq1  CAAGAGACTAAACTTCTGCTGTCTCTGACTTCCATCCAACATCCTCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACTAAACTTCTGCTGTCTCTGACTTCCATCCAACATCCTCAATA  500

seq1  TCTTTTCAAACTGTTTATCTATAGTTATTACAGAGATGTTGGTCATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAACTGTTTATCTATAGTTATTACAGAGATGTTGGTCATGTCT  550

seq1  CACCTGGCTTGTTGCATTGACAATTTACATTCTCTGAACCAGCATCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTTGTTGCATTGACAATTTACATTCTCTGAACCAGCATCCTGG  600

seq1  TATACTCTCCCTCTCTCCACTCTCTACTGAAATGAAACTCATAAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTCCCTCTCTCCACTCTCTACTGAAATGAAACTCATAAAAAATA  650

seq1  TAATCATTGCACTTCCTATCATGTTTCAGTGGTACCATTTTGTTTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTGCACTTCCTATCATGTTTCAGTGGTACCATTTTGTTTTGAAG  700

seq1  TGGAAAATGTATATATTTACATATATGTCTATGTTCAGCATGATTCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGTATATATTTACATATATGTCTATGTTCAGCATGATTCTGAC  750

seq1  CCCAGTCCACTGACCCCCTGCCCTTCCCTCCCACAAGTGCTCTCTCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCACTGACCCCCTGCCCTTCCCTCCCACAAGTGCTCTCTCAGAT  800

seq1  GCCCAGGTTATCTGTTGTAATATATTCTGTCAGAGCATGGTATACATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTATCTGTTGTAATATATTCTGTCAGAGCATGGTATACATTTA  850

seq1  CTTGTCTCACCCTGCCTGTCTTGCTGAAGGTGCTCTGAGCCTAGGATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCACCCTGCCTGTCTTGCTGAAGGTGCTCTGAGCCTAGGATTGG  900

seq1  TAAAATGGTTTGTCAAGAAAGGTAAGAAGGAAAGTCAGTGTATAATCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGTTTGTCAAGAAAGGTAAGAAGGAAAGTCAGTGTATAATCTCA  950

seq1  CATACATGTGAACCCACTGTTTTAATGTGTGTGTGTGTGTGTGTGTG  997
      ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATACATGTGAACCCACTG-TTTAATGTGTGTGTGTGTGTGTGTGTG  996

seq1: chr5_72025200_72026309
seq2: B6Ng01-012N03.g_65_1160 (reverse)

seq1  AAGCAATTACCTTTCATGTTTAGTATTTGCATATACATGTGGCATGGGCT  50
      |||||  ||||||||||| |||||| |||||||||||||| |||| ||||
seq2  AAGCA--TACCTTTCATG-TTAGTA-TTGCATATACATGT-GCAT-GGCT  44

seq1  AATTGTGTGTGTGTGCTGTGTATTTGTGTGTGTGTGCATTCTGTGTGCTC  100
      || |||||| |||||| ||    ||||| |||||||||||| | | ||||
seq2  AA-TGTGTG-GTGTGCGGT---ATTGTGGGTGTGTGCATTCCG-GGGCTC  88

seq1  ACTTTAATGTGGGAGTCAGAGTTCAGTCCTTAGACAGGGTATGACTTATT  150
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  ACTTTAATGT-GGAGTCAGAGTTCAGT-CTTAGACAGGGTATGACTTATT  136

seq1  CTGTAGCTGCTTACTTTGGTTTTTTTTTTAATTT-AAAAACATACATTTT  199
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CTGTAGCTGCTTAC-TTGGTTTTTTTTTTAATTTAAAAAACATACATTTT  185

seq1  ATTGAATCATATGTCTTAATTAATGAATTTATCAATATAGGGTCTGTCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATCATATGTCTTAATTAATGAATTTATCAATATAGGGTCTGTCAG  235

seq1  TGAACCTTGAGATCATTGAGAGCATTTCTTTAAGACTGGTTGGCTAAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTGAGATCATTGAGAGCATTTCTTTAAGACTGGTTGGCTAAAGA  285

seq1  ACATCTCTGTTTACACAGTGCTAGGACACCATGTGTGTGTGTCACCACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGTTTACACAGTGCTAGGACACCATGTGTGTGTGTCACCACTG  335

seq1  CTGGCTCTTCCTGTGCATTCTGGGGATCTGAACTCAGGTCTTATCCTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTTCCTGTGCATTCTGGGGATCTGAACTCAGGTCTTATCCTCCC  385

seq1  ACCATGGCAGATGACCCCACTGAGCAATCTATCCAATCACAATCTTCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCAGATGACCCCACTGAGCAATCTATCCAATCACAATCTTCACC  435

seq1  ATTTTCAAAGCAGAAACTAGGCTTGTTATTTAAAGACAACAAAATAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGCAGAAACTAGGCTTGTTATTTAAAGACAACAAAATAGAAA  485

seq1  ATGTAAAAACACAAACACACATACATATGAAATAAAAAGCTTAAGTTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAACACAAACACACATACATATGAAATAAAAAGCTTAAGTTTGG  535

seq1  AAGGAAATGGCATACATAACTTTCTACGAAATTATATAAACGTAAATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGGCATACATAACTTTCTACGAAATTATATAAACGTAAATATA  585

seq1  TTTTTTCAAACATAATTCATACCTGTACCTGCACCTAATGAATGCAGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAACATAATTCATACCTGTACCTGCACCTAATGAATGCAGAGA  635

seq1  GAAGCTAAGTGGATTGCATTTCTAAGTGCAACAAACATGAGCAAAAGTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAGTGGATTGCATTTCTAAGTGCAACAAACATGAGCAAAAGTAC  685

seq1  AAGTAGAGTTAACAGAGATACAGCTTTAAAAGCCAGTAAGTAAATAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGTTAACAGAGATACAGCTTTAAAAGCCAGTAAGTAAATAAACA  735

seq1  ATAAACTTTCCAATAAGCAGTTTTACCAGAAGGGATTTATAGAGAATGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTTCCAATAAGCAGTTTTACCAGAAGGGATTTATAGAGAATGGT  785

seq1  ATTTAGAATCCAGTGAACATTCACAGCTAAGCCAAAAATTTACAAATATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATCCAGTGAACATTCACAGCTAAGCCAAAAATTTACAAATATT  835

seq1  TACTTCCAGATGTGTTTCCAAATGCACAGATGGGAAAATCAGCACAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAGATGTGTTTCCAAATGCACAGATGGGAAAATCAGCACAAGAC  885

seq1  ACCCTGCTAGAAGACCACTGCATTGTTTCATAATTAATGTAAAGACGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTAGAAGACCACTGCATTGTTTCATAATTAATGTAAAGACGATC  935

seq1  TCCCCAAAATGATAAGGCATGAGACATAAGGCACTGGAGTTTGTGATCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAATGATAAGGCATGAGACATAAGGCACTGGAGTTTGTGATCAC  985

seq1  TGTACAGGAGGAGGCAGAAAGATTGTAAAAGCCAGAGGAAAGGAGGTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGAGGAGGCAGAAAGATTGTAAAAGCCAGAGGAAAGGAGGTTTT  1035

seq1  GCTGTGAGATTGTATCTCCTTACTAGAAGCTAAGCCTGTAACATCTTACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGATTGTATCTCCTTACTAGAAGCTAAGCCTGTAACATCTTACC  1085

seq1  ATCATGAATTC  1110
      |||||||||||
seq2  ATCATGAATTC  1096