BAC Information

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BAC

Clone NameB6Ng01-013A23
Chromosome5 (Build37)
Map Location 95,061,931 - 95,209,739
singlet/doubletdoublet
Overlap geneLOC621203, LOC100041153, LOC665499, LOC624698
Upstream geneC87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507
Downstream geneLOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A23.bB6Ng01-013A23.g
ACCDH847977DH847978
length1,0771,032
definitionDH847977|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A23, 5' end.DH847978|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,208,649 - 95,209,739)(95,061,931 - 95,062,971)
sequence
gaattcattgttgtagaagttgatattggagatctgagagcattgtttga
atacaggtaggagaacattgagctgggagtctttcatcctacacccctgc
aaatccagagtctcaagagtgcctgccactttcatgaggagacctctcag
aggcataagatccaaatccagtaagaccacacctctcaattccagatgtt
ttagctgaaagaggctctgacagcaggcaaaggaatccaaatctctctgt
gaaatcagggagtaagtaatggagagggtcttcaagggtgtcatcaagca
cctagagataaaggagacagatggttagttctgacaaatgggcttggaga
ggtttggcagggatatacagagtgggagcaggaatcaggtgccccaagat
cagtttgactaagtgattaaggacatcatctatgatgcttcctgttggaa
actgctcagtcatgtcaacctcataatttatctcctggcctcactctaaa
cctgaaaaccagttcatcccctaatcgcagaaagcaacagaagaaatacc
atcccaatagaattctgacaggatctcaatatttgctgtgggtttactga
atctgtattctatcattccctctgcagtcattcttgcgctcatttatagc
ccaagctctacctcctgtcccatgtattcagcagtattcgggctcaaaac
ttttaacccatgggaactgggtgatgatagaaggctgttctaacagatct
gagcatatagctcctgttaaccctgtacttgtgagtcccccaactcctca
ctacacacttccattcctcttcagtttccgtttgattgtgcatccatgat
tctaggaagaattacactgaaccttactttcctacttcatgagtgctcat
ttgagacactgatttaccttgtaaatttccctgtatactgagtattcatg
gaaacaggacatacttccagtctttggagtctctaaatatttcttctagt
gactggtggcatcatgtcctgataccctaagaaagtgatagattgctctg
atgctgaacccgctccccatcaaggct
gaattctcacctgagaaatagcgaatggcagagaagcaccttaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaactctgaga
ttccacctcaaaccagtcaggatggctgagatcaaaaattcattttccat
tctttacgctgccattttttcctattgatgctgtcttttgccttacagag
gatattcagtttcatgaagcccatttattgttgatcttaatgcataagct
atggttgttctgtgcagtaattagtcaacttttacaataactttgagagc
cctgacaccattaatgatattcttcaaccagtagcatttaggagtggagg
atatcaaactatttacagtactagtgttttgttttcctctaatctaattg
tgactgtgccccttttcttttctcttgaagtaaaaagtatttcatatgca
agagccaccatgagctatagcctaaaaaggaagctcctgttactcgaaac
tagggatcactgagcaagagtgagggagagtgactggcatttctttcttt
tcctttctttccttttctttttttgatattatatttattagatatttttt
atttacatttcaaatgttaccccctttcctagtttctcctccaaaaatcc
cctatctcctacccctccccatggtcaagagcccacccactcccattgct
tgtcctggcaatcccctatattgaggcagagagtcttcccaggaccaagg
gtctctcctcccattgatgactgactaggcaatcctctgctacaaatata
gctagagcctcaagttccaccatgtgttttctttggtggtggtatagctc
caagtagctctaagtgtactggttagttcatatgatgttcctctatgagg
ctcagtcctcttcagctccctggctgttttctctggctcatccagtggcg
gacttgtgctcgtccataagaaactatgagcatcacttttgtatttgcca
ggcactggcagagcctcgcaggaaagctatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95208649_95209739
seq2: B6Ng01-013A23.b_47_1123 (reverse)

seq1  AGCCATGATGGAGAGCTGGTTCAGCTATCAGAGCAAATCTATCTCACTTT  50
      |||| |||||| |||| |||||||| |||||||| |||||||| |   ||
seq2  AGCCTTGATGGGGAGCGGGTTCAGC-ATCAGAGC-AATCTATCAC---TT  45

seq1  TCTTAAGGGTTATCAGGACATGATGCCAACCAGTCACTAGGAAGAAATAT  100
      |||||  || ||||||||||||||||| ||||||||||| ||||||||||
seq2  TCTTA--GGGTATCAGGACATGATGCC-ACCAGTCACTA-GAAGAAATAT  91

seq1  TTAGAGACTCCAAAGACTGGAAGTTATGTCCTGTTTCCATGAATACTCAG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAGAGACTCCAAAGACTGGAAG-TATGTCCTGTTTCCATGAATACTCAG  140

seq1  TTATACAAGGGAAATTTTACAAGGTAAATCAGTGTCTCAAATGAGCACTC  200
       ||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  -TATAC-AGGGAAA-TTTACAAGGTAAATCAGTGTCTCAAATGAGCACTC  187

seq1  ATGAAGTAGGAAAGTAAGGTTCAGTTGTAATTCTTCCTAGAATCATGGAT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGAAGTAGGAAAGTAAGGTTCAG-TGTAATTCTTCCTAGAATCATGGAT  236

seq1  GCACAATCAAACGGAAACTGAAGAGGAATGGAAGTGTGTAGTGAGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATCAAACGGAAACTGAAGAGGAATGGAAGTGTGTAGTGAGGAGTT  286

seq1  GGGGGACTCACAAGTACAGGGTTAACAGGAGCTATATGCTCAGATCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACTCACAAGTACAGGGTTAACAGGAGCTATATGCTCAGATCTGTT  336

seq1  AGAACAGCCTTCTATCATCACCCAGTTCCCATGGGTTAAAAGTTTTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCCTTCTATCATCACCCAGTTCCCATGGGTTAAAAGTTTTGAGC  386

seq1  CCGAATACTGCTGAATACATGGGACAGGAGGTAGAGCTTGGGCTATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATACTGCTGAATACATGGGACAGGAGGTAGAGCTTGGGCTATAAAT  436

seq1  GAGCGCAAGAATGACTGCAGAGGGAATGATAGAATACAGATTCAGTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAAGAATGACTGCAGAGGGAATGATAGAATACAGATTCAGTAAAC  486

seq1  CCACAGCAAATATTGAGATCCTGTCAGAATTCTATTGGGATGGTATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAAATATTGAGATCCTGTCAGAATTCTATTGGGATGGTATTTCT  536

seq1  TCTGTTGCTTTCTGCGATTAGGGGATGAACTGGTTTTCAGGTTTAGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTTTCTGCGATTAGGGGATGAACTGGTTTTCAGGTTTAGAGTG  586

seq1  AGGCCAGGAGATAAATTATGAGGTTGACATGACTGAGCAGTTTCCAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGAGATAAATTATGAGGTTGACATGACTGAGCAGTTTCCAACAG  636

seq1  GAAGCATCATAGATGATGTCCTTAATCACTTAGTCAAACTGATCTTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCATAGATGATGTCCTTAATCACTTAGTCAAACTGATCTTGGGG  686

seq1  CACCTGATTCCTGCTCCCACTCTGTATATCCCTGCCAAACCTCTCCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATTCCTGCTCCCACTCTGTATATCCCTGCCAAACCTCTCCAAGC  736

seq1  CCATTTGTCAGAACTAACCATCTGTCTCCTTTATCTCTAGGTGCTTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCAGAACTAACCATCTGTCTCCTTTATCTCTAGGTGCTTGATG  786

seq1  ACACCCTTGAAGACCCTCTCCATTACTTACTCCCTGATTTCACAGAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTGAAGACCCTCTCCATTACTTACTCCCTGATTTCACAGAGAGA  836

seq1  TTTGGATTCCTTTGCCTGCTGTCAGAGCCTCTTTCAGCTAAAACATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTCCTTTGCCTGCTGTCAGAGCCTCTTTCAGCTAAAACATCTGG  886

seq1  AATTGAGAGGTGTGGTCTTACTGGATTTGGATCTTATGCCTCTGAGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAGGTGTGGTCTTACTGGATTTGGATCTTATGCCTCTGAGAGGT  936

seq1  CTCCTCATGAAAGTGGCAGGCACTCTTGAGACTCTGGATTTGCAGGGGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATGAAAGTGGCAGGCACTCTTGAGACTCTGGATTTGCAGGGGTG  986

seq1  TAGGATGAAAGACTCCCAGCTCAATGTTCTCCTACCTGTATTCAAACAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGAAAGACTCCCAGCTCAATGTTCTCCTACCTGTATTCAAACAAT  1036

seq1  GCTCTCAGATCTCCAATATCAACTTCTACAACAATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGATCTCCAATATCAACTTCTACAACAATGAATTC  1077

seq1: chr5_95061931_95062971
seq2: B6Ng01-013A23.g_58_1089

seq1  GAATTCTCACCTGAGAAATAGCGAATGGCAGAGAAGCACCTTAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGAAATAGCGAATGGCAGAGAAGCACCTTAAAAAAAT  50

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGA  100

seq1  TTCCACCTCAAACCAGTCAGGATGGCTGAGATCAAAAATTCATTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCAAACCAGTCAGGATGGCTGAGATCAAAAATTCATTTTCCAT  150

seq1  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200

seq1  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250

seq1  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300

seq1  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350

seq1  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400

seq1  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGTATTTCATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGTATTTCATATGCA  450

seq1  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500

seq1  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550

seq1  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600

seq1  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650

seq1  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700

seq1  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750

seq1  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800

seq1  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGGTTGGTGGTATAGCT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGG-TGGTGGTATAGCT  849

seq1  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  900
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATA-TGATGTTCC-TCTATG  897

seq1  AGGCTTCAGTCCCCTTCAGCTCCCTGGCTGTTTTCTCTGGCTCATCCAGT  950
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGC-TCAGTCCTCTTCAGCTCCCTGGCTGTTTTCTCTGGCTCATCCAGT  946

seq1  GGCGACCTTGTGCTCCGTCCAATAGAAAACTATGAGCATTCACTTCTGTA  1000
      ||||  |||||||| ||||| |||  |||||||||||| |||||| ||||
seq2  GGCGGACTTGTGCT-CGTCC-ATAAGAAACTATGAGCA-TCACTTTTGTA  993

seq1  TTTGCCAGGCACTGGCAGAGCCTCGCAGGAGACAGCTATAT  1041
      ||||||||||||||||||||||||||||  || ||||||||
seq2  TTTGCCAGGCACTGGCAGAGCCTCGCAG--GAAAGCTATAT  1032