BAC Information

Click to search

BAC

Clone NameB6Ng01-013D05
Chromosome5 (Build37)Y (Build37)
Map Location 5,322,675 - 5,323,837573,321 - 573,549
singlet/doubletsingletsinglet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013D05.bB6Ng01-013D05.g
ACCDH848080DH848081
length1,154436
definitionDH848080|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D05, 5' end.DH848081|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,322,675 - 5,323,837)(573,321 - 573,549)
sequence
gaattctacaccttcatccaaaggctgctagtggaagactgacttccagg
caactggggtgagagtcttaagcccacacccacagtgacacacctactcc
aaccaggtcacacctccagatggtgccactccctggtctaagaatatata
aactatcacacccttgccatctggattcctattcacctcgagtagaatac
ggcatcccaggaaggctcccagaagggaaggaactgacacaaatgctagc
tctttcagctcctgtttgctcctagcttctgtaggagttctcaggcacca
gtcatgccttgacctcttcccaaggtgggaaaagaaatcagttccactct
gagcacctggcacgtcttcctttgtgtttcttgggcctggcagctgcttc
tctctagctcgtatctgattatcagtgcctcgttttcacatttcggttcc
tgtactcgtgtgtccaatatcttatattcaatccctacatttaaaatgcc
tgttgtgtgtggtttctgcttccccacacaccgatgcaggtattcgggtt
tctagacacctcatccctgaccgttgcagggcgtgattgcagtctgattt
tctgtgtatgtgtgagtctttggcatgaaagttacatcgagaaggcactc
tttcaaattcactcctttgtctatatgttgagtgtctaaatttcagtgct
tctgaatctctgccctcattttatgaagcgggtctcccgcaggatgtctc
cagcctcctccttctaataggtccagaaatacaggtattctgtgatgcta
ggtagtcttgtgaaatgatttgaacctgggagcttaaagaagaagtccgc
tcccatcaccgtgggcatgggaggtaagttcgtgttgccacccagctctg
gctgcctgagggcctgctgctggggcttttccatctgctgcacagtggcc
tccagtgcaccaggggcgcctccaggccgagactcatttctctcattttc
tttcattttccccgagacacttatccctgctcggcatctgctttatttcc
cggtttctgttgcaaaccctaattccctcttttcttccttgtcccagtga
tgattggatagcttgttatattaacatttgaagcacctgctggaaggact
atct

cttaaaccacttagatttgaccttagtacaaggagatacccagggatcca
ccccataatcagactccaaacacagacaccattgcatactccagcaagat
tttgctgaaaggatcctgatatagctgtctcttgtgaggctatgccagtg
cctggcaaacacagaagtggatgctcacagtcagctattggatgcaacac
agggtctccaatggaggagctagagaaagtacccaaggagctaaaggggt
ctgcaaccctataggtggaacaacagtatgaactaacaagtacccccaga
gctaatgtctctagctgcatatgtagcagaatatggcctagtaggccatc
attgggaagagaggccccttggttttgcaaactttgcctcagtacagggg
aacaccagggccaagaagtgggagtgggtgggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5322675_5323837
seq2: B6Ng01-013D05.b_46_1199 (reverse)

seq1  AGATAGACCTTCTCAGCAAGTGCTTCAAATGTTAATATACACAAGCTAT-  49
      |||||| ||||| ||||| |||||||||||||||||||| ||||||||| 
seq2  AGATAGTCCTTC-CAGCAGGTGCTTCAAATGTTAATATA-ACAAGCTATC  48

seq1  CAATCATTCCAACTGGGGACAAGAAGAAAAAGAGGGAATTAGGGTTTGCA  99
      |||||||    ||| |||||||| |  |||||||||||||||||||||| 
seq2  CAATCAT---CACT-GGGACAAGGAAGAAAAGAGGGAATTAGGGTTTGC-  93

seq1  AACAGAAA-CGGGAAATAAAGCAGATGGCGAGGCAGGGATAAGTGTCTCG  148
      |||||||| |||||||||||||||||| ||| ||||||||||||||||||
seq2  AACAGAAACCGGGAAATAAAGCAGATGCCGA-GCAGGGATAAGTGTCTCG  142

seq1  GGGAAAATGAAAGAAAATGAGAGGAAATGAGTCTCGGCCTGGAGGCGCCC  198
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GGGAAAATGAAAGAAAATGAGA-GAAATGAGTCTCGGCCTGGAGGCG-CC  190

seq1  CCTGGTGCACTGGAGGCCACTGTGCAGCAGATGGAAGATGCCCCAGCAGC  248
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CCTGGTGCACTGGAGGCCACTGTGCAGCAGATGGAA-AAGCCCCAGCAGC  239

seq1  AGGCCCTCAGGCAGCCAGAGCTGGGTGGCAACACGAACTTACCTCCCATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCAGGCAGCCAGAGCTGGGTGGCAACACGAACTTACCTCCCATG  289

seq1  CCCACGGTGATGGGAGCGGACTTCTTCTTTAAGCTCCCAGGTTCAAATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGTGATGGGAGCGGACTTCTTCTTTAAGCTCCCAGGTTCAAATCA  339

seq1  TTTCACAAGACTACCTAGCATCACAGAATACCTGTATTTCTGGACCTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGACTACCTAGCATCACAGAATACCTGTATTTCTGGACCTATT  389

seq1  AGAAGGAGGAGGCTGGAGACATCCTGCGGGAGACCCGCTTCATAAAATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGGAGGCTGGAGACATCCTGCGGGAGACCCGCTTCATAAAATGA  439

seq1  GGGCAGAGATTCAGAAGCACTGAAATTTAGACACTCAACATATAGACAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGATTCAGAAGCACTGAAATTTAGACACTCAACATATAGACAAA  489

seq1  GGAGTGAATTTGAAAGAGTGCCTTCTCGATGTAACTTTCATGCCAAAGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAATTTGAAAGAGTGCCTTCTCGATGTAACTTTCATGCCAAAGAC  539

seq1  TCACACATACACAGAAAATCAGACTGCAATCACGCCCTGCAACGGTCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATACACAGAAAATCAGACTGCAATCACGCCCTGCAACGGTCAGG  589

seq1  GATGAGGTGTCTAGAAACCCGAATACCTGCATCGGTGTGTGGGGAAGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGTGTCTAGAAACCCGAATACCTGCATCGGTGTGTGGGGAAGCAG  639

seq1  AAACCACACACAACAGGCATTTTAAATGTAGGGATTGAATATAAGATATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACACAACAGGCATTTTAAATGTAGGGATTGAATATAAGATATT  689

seq1  GGACACACGAGTACAGGAACCGAAATGTGAAAACGAGGCACTGATAATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACGAGTACAGGAACCGAAATGTGAAAACGAGGCACTGATAATCA  739

seq1  GATACGAGCTAGAGAGAAGCAGCTGCCAGGCCCAAGAAACACAAAGGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGAGCTAGAGAGAAGCAGCTGCCAGGCCCAAGAAACACAAAGGAAG  789

seq1  ACGTGCCAGGTGCTCAGAGTGGAACTGATTTCTTTTCCCACCTTGGGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCAGGTGCTCAGAGTGGAACTGATTTCTTTTCCCACCTTGGGAAG  839

seq1  AGGTCAAGGCATGACTGGTGCCTGAGAACTCCTACAGAAGCTAGGAGCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGGCATGACTGGTGCCTGAGAACTCCTACAGAAGCTAGGAGCAA  889

seq1  ACAGGAGCTGAAAGAGCTAGCATTTGTGTCAGTTCCTTCCCTTCTGGGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGCTGAAAGAGCTAGCATTTGTGTCAGTTCCTTCCCTTCTGGGAG  939

seq1  CCTTCCTGGGATGCCGTATTCTACTCGAGGTGAATAGGAATCCAGATGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGGATGCCGTATTCTACTCGAGGTGAATAGGAATCCAGATGGC  989

seq1  AAGGGTGTGATAGTTTATATATTCTTAGACCAGGGAGTGGCACCATCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGATAGTTTATATATTCTTAGACCAGGGAGTGGCACCATCTGG  1039

seq1  AGGTGTGACCTGGTTGGAGTAGGTGTGTCACTGTGGGTGTGGGCTTAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGACCTGGTTGGAGTAGGTGTGTCACTGTGGGTGTGGGCTTAAGA  1089

seq1  CTCTCACCCCAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCCCAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGAT  1139

seq1  GAAGGTGTAGAATTC  1163
      |||||||||||||||
seq2  GAAGGTGTAGAATTC  1154


seq1: chrY_573321_573549
seq2: B6Ng01-013D05.g_282_507

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| |||||||||| |||||| |||| |||| || ||||||| ||||||
seq2  ATAGGTGGAACAACAGTATGAACTAACAAGTACCCCCAGAGCTAATGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| ||||| |||||||||| |||||||||||||||||
seq2  CTAGCTGCATATGTAGCAGAATATGGCCTAGTAGGCCATCATTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
      ||||||||||||| ||||||||||    |||| |||||||||||||||||
seq2  GAGGCCCCTTGGTTTTGCAAACTT----TGCCTCAGTACAGGGGAACACC  196

seq1  AGGGCCAAGAAGTGGGAGAAGGTGGGTAGG  229
      ||||||||||||||||||  ||||||||||
seq2  AGGGCCAAGAAGTGGGAGTGGGTGGGTAGG  226


| Home | SequenceCutter | Blast | Download |