BAC Information

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BAC

Clone NameB6Ng01-013G16
Chromosome5 (Build37)
Map Location 33,509,837 - 33,613,716
singlet/doubletdoublet
Overlap geneSpon2, Ctbp1
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
Downstream geneMaea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013G16.bB6Ng01-013G16.g
ACCDH848235DH848236
length1,091656
definitionDH848235|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G16, 5' end.DH848236|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,509,837 - 33,510,937)(33,613,065 - 33,613,716)
sequence
gaattctttcctccattctcctccttagagaaatggttgattctacgaat
agggcagaaaatatacaatcagaggtggggacatcttgtagtgacagaaa
gcaaggatgtgctaatcatgaacacacatacaagcatgtcacagagaacg
acacaatgggacaaatgaaagaaccccagttgacaacaatgaactgttag
aaccgagtcattaaacaaagccctaggctgctaagatggctcagttggta
aagatgcctgccaccaagcctgctggtttgagtttaaccaattcctcagt
ggtagaagaggaaaactgactcctgaaagttatcctgtgacttccatgtg
tacacacagacacacacacacacacacacacacagagagacacacacaga
gacacaaacacacacagacacacacacatgcacacatgcacacatgcatg
cagacacatgcacaaccaaattgataatgataaaaagcaaagtatttaaa
taaaactcaaagaataaggcatctgactctcagctgatataaatgaattc
taaatgaattaaaccagtgcatagaggcaaatctctgatacaaaagaaaa
ttccaaatcatacagatgctctgagataagggggaaccctgagctggtga
tttgtcaacaagacacacgcctagacatatctgggaagagggaatctcaa
ccgaggaactgcctcccttagatggcttgtagacaagtcttcgggggcat
tttttttttttgattgatggttgatggaggagagcctggaccactgtggg
tggtgccttccttggacaaatcgtccaggctgtataaacaagcaggttga
gtgagccattggggagcaagctagcaagcacactcctcatggcttctgct
tctgtctctgcctccaggtacttgcctgacttcagtcacgatgggagtgt
gcttggagagttgtgagctgaaacaacactttcagcctagtactttgatt
atgggtgtttatcacatatcggaaactaaccatccacttcgtgatgtggg
ctgtgcctagtgatgtcatgggagagtgctgaatagaaagg
gaattctttcccagagggcctttaaggaggatgggagtggctgaaggaga
gattgatcttggttgaaaagtgctggccgttcccagaaggaagtttttgg
ttggttggttggttgattggttggttgcttgagacaggttcccagagccc
ccacagcccagatagctgttgtttttgatattgcagatgacagtgcccca
tgcaaggaacaaatattccttgccacgagtcttgtcagagcttccagcat
cctgactttaggtctgttcttctgcactggctctttagtgccctctgctg
ggaacgttcggcatggcacctactaagaggagggttgggcctgtggcagg
tgcctggcacgggcaggctgtgactctagggcgttgttgctgctttactg
actggctgtccattgtctgtagtgttcatcaaggctgggcatatctttgg
aagctagcactgggtatgtgtgctgggaattcacagagacagcttgtgag
aaagtttgtgagtatttctgggaaagagatatcccccaaaatacattggg
tgctggggtccttgggccacaacctaacttggattgtggccattgtggcc
tttctggatgagtttccagagcattgactggacaagtggtcttgtctttt
gggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33509837_33510937
seq2: B6Ng01-013G16.b_45_1135

seq1  GAATTCTTTCCTCCATTCTCCTCCTTAGAGAAATGGTTGATTCTACGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCCATTCTCCTCCTTAGAGAAATGGTTGATTCTACGAAT  50

seq1  AGGGCAGAAAATATACAATCAGAGGTGGGGACATCTTGTAGTGACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAAAATATACAATCAGAGGTGGGGACATCTTGTAGTGACAGAAA  100

seq1  GCAAGGATGTGCTAATCATGAACACACATACAAGCATGTCACAGAGAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGTGCTAATCATGAACACACATACAAGCATGTCACAGAGAACG  150

seq1  ACACAATGGGACAAATGAAAGAACCCCAGTTGACAACAATGAACTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGGGACAAATGAAAGAACCCCAGTTGACAACAATGAACTGTTAG  200

seq1  AACCGAGTCATTAAACAAAGCCCTAGGCTGCTAAGATGGCTCAGTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGTCATTAAACAAAGCCCTAGGCTGCTAAGATGGCTCAGTTGGTA  250

seq1  AAGATGCCTGCCACCAAGCCTGCTGGTTTGAGTTTAACCAATTCCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCTGCCACCAAGCCTGCTGGTTTGAGTTTAACCAATTCCTCAGT  300

seq1  GGTAGAAGAGGAAAACTGACTCCTGAAAGTTATCCTGTGACTTCCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGAGGAAAACTGACTCCTGAAAGTTATCCTGTGACTTCCATGTG  350

seq1  TACACACAGACACACACACACACACACACACACAGAGAGACACACACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGACACACACACACACACACACACACAGAGAGACACACACAGA  400

seq1  GACACAAACACACACAGACACACACACATGCACACATGCACACATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAACACACACAGACACACACACATGCACACATGCACACATGCATG  450

seq1  CAGACACATGCACAACCAAATTGATAATGATAAAAAGCAAAGTATTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACATGCACAACCAAATTGATAATGATAAAAAGCAAAGTATTTAAA  500

seq1  TAAAACTCAAAGAATAAGGCATCTGACTCTCAGCTGATATAAATGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAAAGAATAAGGCATCTGACTCTCAGCTGATATAAATGAATTC  550

seq1  TAAATGAATTAAACCAGTGCATAGAGGCAAATCTCTGATACAAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATTAAACCAGTGCATAGAGGCAAATCTCTGATACAAAAGAAAA  600

seq1  TTCCAAATCATACAGATGCTCTGAGATAAGGGGGAACCCTGAGCTGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATCATACAGATGCTCTGAGATAAGGGGGAACCCTGAGCTGGTGA  650

seq1  TTTGTCAACAAGACACACGCCTAGACATATCTGGGAAGAGGGAATCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAACAAGACACACGCCTAGACATATCTGGGAAGAGGGAATCTCAA  700

seq1  CCGAGGAACTGCCTCCCTTAGATGGCTTGTAGACAAGTCTTCGGGGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAACTGCCTCCCTTAGATGGCTTGTAGACAAGTCTTCGGGGGCAT  750

seq1  TTTTTTTTTTTGATTGATGGTTGATGGAGGAGAGCCTGGACCACTGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGATTGATGGTTGATGGAGGAGAGCCTGGACCACTGTGGG  800

seq1  TGGTGCCTTCCTTGGACAAATCGTCCAAGGCTGTATAAACAAGCAGGTTG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGTGCCTTCCTTGGACAAATCGTCC-AGGCTGTATAAACAAGCAGGTTG  849

seq1  AGTGAGCCA-TGGGGAGCAAGCTAGCAAGCAGCACTCCTCCATGGCTTCT  899
      ||||||||| ||||||||||||||||||||| ||||||| ||||||||||
seq2  AGTGAGCCATTGGGGAGCAAGCTAGCAAGCA-CACTCCT-CATGGCTTCT  897

seq1  GCTTCTGTCTCTGCCTCCAGGTTCCTGCCCTGACTTCAGTCAACGAT-GG  948
      |||||||||||||||||||||| | || ||||||||||||| ||||| ||
seq2  GCTTCTGTCTCTGCCTCCAGGTACTTG-CCTGACTTCAGTC-ACGATGGG  945

seq1  AGTGTGGCTTGAGAGTTGTGAGCTGAAACAAACACTTCCAGCCTAGTTAC  998
      ||||||  | ||||||||||||||||||| ||||||| |||||||| |||
seq2  AGTGTGCTTGGAGAGTTGTGAGCTGAAAC-AACACTTTCAGCCTAG-TAC  993

seq1  TTTTGATTAT-GGTGTTTATCACATTATCGGAAACCTAACAAACCCACTT  1047
       ||||||||| ||||||||||||| ||||||||| |||||  | ||||||
seq2  -TTTGATTATGGGTGTTTATCACA-TATCGGAAA-CTAAC-CATCCACTT  1039

seq1  CGTGAATGTGGGCTGTGCCTAGTGATGTCATTGGAAGAGTGCTGAATAGA  1097
      |||| ||||||||||||||||||||||||| ||| |||||||||||||||
seq2  CGTG-ATGTGGGCTGTGCCTAGTGATGTCA-TGGGAGAGTGCTGAATAGA  1087

seq1  AAGG  1101
      ||||
seq2  AAGG  1091

seq1: chr5_33613065_33613716
seq2: B6Ng01-013G16.g_65_720 (reverse)

seq1  CATCACCAAAAGACAAGACCACTTGT-CAGTCAATGCTCTGGAAACTCAT  49
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATC-CCAAAAGACAAGACCACTTGTCCAGTCAATGCTCTGGAAACTCAT  49

seq1  CCAGAAAGGCCACAAATGGCCACAATCCAAGTTAGGTTGTGG-CCAAGGA  98
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CCAGAAAGGCCAC-AATGGCCACAATCCAAGTTAGGTTGTGGCCCAAGGA  98

seq1  ACCCAGCACCCAATGTA-TTTGGGGAATATCTCTTT-CCAG-AATACTCA  145
       |||||||||||||||| ||||||| |||||||||| |||| ||||||||
seq2  CCCCAGCACCCAATGTATTTTGGGGGATATCTCTTTCCCAGAAATACTCA  148

seq1  CAAACTTTCTCACAAGCTGTCTCTGTGAATTCCCAGCACACATACCCAGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTCTCACAAGCTGTCTCTGTGAATTCCCAGCACACATACCCAGT  198

seq1  GCTAGCTTCC-AAGATATGCCCAGCCTTGATGAACACTACAGACAATGGA  244
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTCCAAAGATATGCCCAGCCTTGATGAACACTACAGACAATGGA  248

seq1  CAGCCAGTCAGTAAAGCAGCAACAACGCCCTAGAGTCACAGCCTGCCCGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTCAGTAAAGCAGCAACAACGCCCTAGAGTCACAGCCTGCCCGT  298

seq1  GCCAGGCACCTGCCACAGGCCCAACCCTCCTCTTAGTAGGTGCCATGCCG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCACCTGCCACAGGCCCAACCCTCCTCTTAGTAGGTGCCATGCCG  348

seq1  AACGTTCCCAGCAGAGGGCACTAAAGAGCCAGTGCAGAAGAACAGACCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCCCAGCAGAGGGCACTAAAGAGCCAGTGCAGAAGAACAGACCTA  398

seq1  AAGTCAGGATGCTGGAAGCTCTGACAAGACTCGTGGCAAGGAATATTTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGATGCTGGAAGCTCTGACAAGACTCGTGGCAAGGAATATTTGT  448

seq1  TCCTTGCATGGGGCACTGTCATCTGCAATATCAAAAACAACAGCTATCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCATGGGGCACTGTCATCTGCAATATCAAAAACAACAGCTATCTG  498

seq1  GGCTGTGGGGGCTCTGGGAACCTGTCTCAAGCAACCAACCAATCAACCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGGGGCTCTGGGAACCTGTCTCAAGCAACCAACCAATCAACCAA  548

seq1  CCAACCAACCAAAAACTTCCTTCTGGGAACGGCCAGCACTTTTCAACCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACCAAAAACTTCCTTCTGGGAACGGCCAGCACTTTTCAACCAA  598

seq1  GATCAATCTCTCCTTCAGCCACTCCCATCCTCCTTAAAGGCCCTCTGGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATCTCTCCTTCAGCCACTCCCATCCTCCTTAAAGGCCCTCTGGGA  648

seq1  AAGAATTC  652
      ||||||||
seq2  AAGAATTC  656