BAC Information

Click to search

BAC

Clone NameB6Ng01-013I13
Chromosome5 (Build37)
Map Location 6,637,534 - 6,638,632
singlet/doubletsinglet
Overlap genenone
Upstream geneA330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
Downstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013I13.bB6Ng01-013I13.g
ACCDH848325DH848326
length1,0851,150
definitionDH848325|Mus musculus domesticus DNA, BAC clone: B6Ng01-013I13, 5' end.DH848326|Mus musculus domesticus DNA, BAC clone: B6Ng01-013I13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtattaagaactgctctgcagtacgttagggctggagcaatag
gatcatgcatgttttaaagatacttaactactttctgatgagatttaagg
cttgctttcaaaagtagatataaatgcctttcacaaagctcaaagctggg
aaaatcacaggccttaggtgggaagccacaatcaagctgccttctaagta
tttatacttatgtccatagactagtgtactttcagacccaaagctatctg
cacatgtgtttgtgtgtgtgcacacagacacatagacacagacagagaga
cagacaacagacagacagaaagacacacacacacacacacacacacacac
acacacacacacacaccccacatgaaaacaagaaggaaactagttggaaa
aaagttggcatcaataggacaggactttatgtaccaaagatcttcaatta
cacttctgacttatgttttgtaattaatttgcttcaaataccagaaagtt
gtgtgttaaggcagcagtggggctgtattgggcaaaacgtatgatttttt
tttagaagtaataagttcaaggactataaagcaaaacatggtggctatct
ctagcaaagcattgcagacttgaagactattgggtacttttgaatatata
tatatatatatccccttttccagggaaactacttaggatagagtgtgtgc
actcatgctatctggaagatgtgatccttatgatctgaaaaattatagca
ttctattttttaatggtaaagaaataagtaatgcatcaaagtttatcctc
ttttcttccttgactccatttcatttctagattttttcttcactctgtag
ccaagcaaattttcttattaagccacttctaatgctgttcatcttcattt
caacatctagaattgtagtttagcacattttgtacagattgtctcacaaa
aacatatattaaagtatgtttagtataaggctgtttacctaccccactgg
cagtagatgacaatacaccttggcaggaagtgtattcataattactgaat
tgaccctaatttagcaggatattttaaggatggga
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgtttaccttttgccatctggcaatctctggagttagttgtta
tagttgcctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagtaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggccccaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccggttgtctggagt
cgaagatgtcgccgcctcagaagctctgtggctctcgccaggaaggtggc
aggttgtctggaactgaagatggtgccgccccagatctctgcgactctcg
cccgtcccagaaacggctggcctctgtattccacacagtcacccgtgcag
cctgccctccgcggaatcccggagccaagaaggctcccgccggcgcctgt
gacacaaacctctcaggccggacagacctctgtgctctcaccaggagggt
ggcccggctgtctggagctgaagatggcgccgccccagaggctctgcgac
tctcgcccgtaccagaaacggctggcctctgtatccacacggtctcccgt
gcagcctgccctccgcggagtccggagccagaaggctcccaccggcgcct
gtgacacaaacctgttgctctgaatcttatggagcaacactactccccag
aatttaagctcattggtgtgagagcaaagatttgaagaaactccctttag
aggcatagctataaatccttccacttaggaacggtaacaatgaagattca
actcaaatcttctggattgagctagagcatagaatttttctacatatggc
aggctattagcttactagaggcaagtccggggatctgagccaaccctttc
agatcctgatgtcagggataacgacttgaaccttgatacttcatgaattg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6637534_6638632
seq2: B6Ng01-013I13.b_47_1131 (reverse)

seq1  TCCCATCCCCTAAAATATACCTGCTAAATATAGGTCAAATTTCAGTAATT  50
      |||||| || |||||||| ||||||||||   ||||||  ||||||||||
seq2  TCCCAT-CCTTAAAATAT-CCTGCTAAATTAGGGTCAA--TTCAGTAATT  46

seq1  ATGATACCACTTCATGCC-AGGTGTTATTGTCATCTAACTTGCCAGT-GA  98
      ||||   |||||| |||| ||||| ||||||||||||   ||||||| | 
seq2  ATGAATACACTTCCTGCCAAGGTG-TATTGTCATCTA--CTGCCAGTGGG  93

seq1  GTAGGTAAACAGCCTAATACTAAAACATTACTTTAATAATATGTTTTTGT  148
      ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||
seq2  GTAGGTAAACAGCCTTATACT-AAACA-TACTTTAAT-ATATGTTTTTGT  140

seq1  GAGACAATCTTGGTACAAAAATGTGCTAAACTACAATTCTAGATGTTGAA  198
      ||||||||||  |||| |||||||||||||||||||||||||||||||||
seq2  GAGACAATCT--GTAC-AAAATGTGCTAAACTACAATTCTAGATGTTGAA  187

seq1  ATGAAGATGAACAGCATTAGAAGTGGCTTTATTAGGAAAATTTGCTTGGC  248
      ||||||||||||||||||||||||||| ||| || |||||||||||||||
seq2  ATGAAGATGAACAGCATTAGAAGTGGC-TTAATAAGAAAATTTGCTTGGC  236

seq1  TACAAGAGTGAAGAAAAAAATCTAGAAATGAAATGGAGTCAAGGAAGAAA  298
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAC-AGAGTGAAG-AAAAAATCTAGAAATGAAATGGAGTCAAGGAAGAAA  284

seq1  AGAGGATAAACTTTGATGCATTACTTATTTCTTTACCATTAAAAAATAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAAACTTTGATGCATTACTTATTTCTTTACCATTAAAAAATAGA  334

seq1  ATGCTATAATTTTTCAGATCATAAGGATCACATCTTCCAGATAGCATGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATAATTTTTCAGATCATAAGGATCACATCTTCCAGATAGCATGAG  384

seq1  TGCACACACTCTATCCTAAGTAGTTTCCCTGGAAAAGGGGATATATATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACTCTATCCTAAGTAGTTTCCCTGGAAAAGGGGATATATATAT  434

seq1  ATATATATTCAAAAGTACCCAATAGTCTTCAAGTCTGCAATGCTTTGCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCAAAAGTACCCAATAGTCTTCAAGTCTGCAATGCTTTGCTA  484

seq1  GAGATAGCCACCATGTTTTGCTTTATAGTCCTTGAACTTATTACTTCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGCCACCATGTTTTGCTTTATAGTCCTTGAACTTATTACTTCTAA  534

seq1  AAAAAAATCATACGTTTTGCCCAATACAGCCCCACTGCTGCCTTAACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCATACGTTTTGCCCAATACAGCCCCACTGCTGCCTTAACACA  584

seq1  CAACTTTCTGGTATTTGAAGCAAATTAATTACAAAACATAAGTCAGAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCTGGTATTTGAAGCAAATTAATTACAAAACATAAGTCAGAAGT  634

seq1  GTAATTGAAGATCTTTGGTACATAAAGTCCTGTCCTATTGATGCCAACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAAGATCTTTGGTACATAAAGTCCTGTCCTATTGATGCCAACTT  684

seq1  TTTTCCAACTAGTTTCCTTCTTGTTTTCATGTGGGGTGTGTGTGTGTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAACTAGTTTCCTTCTTGTTTTCATGTGGGGTGTGTGTGTGTGTG  734

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTCTGTCTGTCTGTTGTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTCTGTCTGTCTGTTGTCT  784

seq1  GTCTCTCTGTCTGTGTCTATGTGTCTGTGTGCACACACACAAACACATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGTCTGTGTCTATGTGTCTGTGTGCACACACACAAACACATGT  834

seq1  GCAGATAGCTTTGGGTCTGAAAGTACACTAGTCTATGGACATAAGTATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGCTTTGGGTCTGAAAGTACACTAGTCTATGGACATAAGTATAA  884

seq1  ATACTTAGAAGGCAGCTTGATTGTGGCTTCCCACCTAAGGCCTGTGATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGAAGGCAGCTTGATTGTGGCTTCCCACCTAAGGCCTGTGATTT  934

seq1  TCCCAGCTTTGAGCTTTGTGAAAGGCATTTATATCTACTTTTGAAAGCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTTTGAGCTTTGTGAAAGGCATTTATATCTACTTTTGAAAGCAA  984

seq1  GCCTTAAATCTCATCAGAAAGTAGTTAAGTATCTTTAAAACATGCATGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAATCTCATCAGAAAGTAGTTAAGTATCTTTAAAACATGCATGAT  1034

seq1  CCTATTGCTCCAGCCCTAACGTACTGCAGAGCAGTTCTTAATACAGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGCTCCAGCCCTAACGTACTGCAGAGCAGTTCTTAATACAGAATT  1084

seq1  C  1099
      |
seq2  C  1085