BAC Information

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BAC

Clone NameB6Ng01-013N10
Chromosome5 (Build37)
Map Location 148,486,143 - 148,604,527
singlet/doubletdoublet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N10.bB6Ng01-013N10.g
ACCDH848551DH848552
length1,043593
definitionDH848551|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N10, 5' end.DH848552|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,486,143 - 148,487,198)(148,603,935 - 148,604,527)
sequence
gaattcattttatattttattatttttataatgtttatttctattttatt
tatttgtttgtttacttgtctttatttattggagtttttcaatgcaaagt
ttctctgtgtagccttggctgtcttagaactcactctgtaggccaggctg
acctcaaagtcagaaatccacctgcctgtgcctctcaagtgctgggatta
aaggcatgccccaccactgcctagctattttatatatacataaatataca
tatttatctgtatctgtatatatatgtatacatatacatatatgctgaag
agggcattgggtgccttgaagcctagttacagtttgttgcaagctccatg
tgggtgctgggaaatgaattcaggcccccctgtaagaataaccagtgctc
ctaatggctgagccatctctccagccactgatttaaatgtgcatttcttt
caataggccctgtcatttgtagggagtacaccctgctgtagaaggaggca
gaaatggttcttaggcctgtaggcctggggacacactctctggacctcac
ttccaaggcagtcaaaatagctatgcagtattttaatgactacaaatatc
attttagtattgttcagttatgtcctatcaacaagacagcatttcaaaag
tggattatgttattctatttgttccttgctaggtagtcactaaggaaatc
atgaatagacgaaggttctgttcagacaggagagagtgagggtgctttct
ctggtcataaaattgttacaaacttttctattaaatttaatactttttca
tttcttaaattatattttgtatgtgttttcaagacaactatgaagtccaa
ataacttcttagatactatgaaacaaaaatatctgtttaatttcccacta
cagtactatgaaggtagagtatagagttgcaatttgttcttttattcata
gtagtatttgggttgctgcaacaacctgtaggctgggggcacagctctgg
aagatttcagaatggtgaagctctgtgtctatggcttattttc
gaattctgatgtgttgtttctaagaatcaggcctgccctatgttagggct
ttccctttgatttacccatgaagtgagattctccccagagattccagctc
ccccattgtcttcaccagcagctgaaatcctagctgattacagctgcgtt
gagacatgaaaccactaacgatgtgagatgctgctgcagtgtgcacagat
tcttcttgtggtgacagatgtcaagtatatgtatgcatatatgtaaatac
acacacatatatattaatatcttatataattacaccaatatattaaatat
atttaaatattattatatgatatattattatacattataaaacatattca
ttgttactatgattattaatgctacaatataattaatgtagttaataatt
atagaatgtagttatataatataatcattttataatatatttacaatata
tttaattattactattctaaatatattttatatatttaaatatatattga
aaatacatgtgtgtatgtaaaagatacccatttcaggccatttaaaaaac
ttttttagatttatttgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148486143_148487198
seq2: B6Ng01-013N10.b_49_1091

seq1  GAATTCATTTTATATTTTATTATTTTTATAATGTTTATTTCTATTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTATATTTTATTATTTTTATAATGTTTATTTCTATTTTATT  50

seq1  TATTTGTTTGTTTACTTGTCTTTATTTATTGGAGTTTTTCAATGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTGTTTACTTGTCTTTATTTATTGGAGTTTTTCAATGCAAAGT  100

seq1  TTCTCTGTGTAGCCTTGGCTGTCTTAGAACTCACTCTGTAGGCCAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCTTGGCTGTCTTAGAACTCACTCTGTAGGCCAGGCTG  150

seq1  ACCTCAAAGTCAGAAATCCACCTGCCTGTGCCTCTCAAGTGCTGGGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAAGTCAGAAATCCACCTGCCTGTGCCTCTCAAGTGCTGGGATTA  200

seq1  AAGGCATGCCCCACCACTGCCTAGCTATTTTATATATACATAAATATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGCCCCACCACTGCCTAGCTATTTTATATATACATAAATATACA  250

seq1  TATTTATCTGTATCTGTATATATATGTATACATATACATATATGCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTGTATCTGTATATATATGTATACATATACATATATGCTGAAG  300

seq1  AGGGCATTGGGTGCCTTGAAGCCTAGTTACAGTTTGTTGCAAGCTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTGGGTGCCTTGAAGCCTAGTTACAGTTTGTTGCAAGCTCCATG  350

seq1  TGGGTGCTGGGAAATGAATTCAGGCCCCCCTGTAAGAATAACCAGTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGGAAATGAATTCAGGCCCCCCTGTAAGAATAACCAGTGCTC  400

seq1  CTAATGGCTGAGCCATCTCTCCAGCCACTGATTTAAATGTGCATTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCTGAGCCATCTCTCCAGCCACTGATTTAAATGTGCATTTCTTT  450

seq1  CAATAGGCCCTGTCATTTGTAGGGAGTACACCCTGCTGTAGAAGGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGCCCTGTCATTTGTAGGGAGTACACCCTGCTGTAGAAGGAGGCA  500

seq1  GAAATGGTTCTTAGGCCTGTAGGCCTGGGGACACACTCTCTGGACCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTTCTTAGGCCTGTAGGCCTGGGGACACACTCTCTGGACCTCAC  550

seq1  TTCCAAGGCAGTCAAAATAGCTATGCAGTATTTTAATGACTACAAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGCAGTCAAAATAGCTATGCAGTATTTTAATGACTACAAATATC  600

seq1  ATTTTAGTATTGTTCAGTTATGTCCTATCAACAAGACAGCATTTCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTATTGTTCAGTTATGTCCTATCAACAAGACAGCATTTCAAAAG  650

seq1  TGGATTATGTTATTCTATTTGTTCCTTGCTAGGTAGTCACTAAGGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATGTTATTCTATTTGTTCCTTGCTAGGTAGTCACTAAGGAAATC  700

seq1  ATGAATAGACGAAGGTTCTGTTCAGACAGGAGAGAGTGAGGGTGCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGACGAAGGTTCTGTTCAGACAGGAGAGAGTGAGGGTGCTTTCT  750

seq1  CTGGTCATAAAATTGTTACAAACTTTTCTATTAAATTTAATACTTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATAAAATTGTTACAAACTTTTCTATTAAATTTAATACTTTTTCA  800

seq1  TTTCTTAAATTATATTTTGTATGTG-TTTCAAGACAACTATGAAGTCCAA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCTTAAATTATATTTTGTATGTGTTTTCAAGACAACTATGAAGTCCAA  850

seq1  ATAACTTCTTAGATACTATGAAACAAAAATATCTG-TTAATTTCCCACTA  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAACTTCTTAGATACTATGAAACAAAAATATCTGTTTAATTTCCCACTA  900

seq1  CAGTACTATGAAGGTAGAGTATAGAGTTGCAATTTGTTCTTTAATTCCAT  948
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  CAGTACTATGAAGGTAGAGTATAGAGTTGCAATTTGTTCTTTTATT-CAT  949

seq1  AGTAAGTATTTGGGTTTGCTGCAAACAAACCCTGTAGGGCTGGGGGCCAC  998
      ||| |||||||||| ||||||| |||||  |||||| ||||||||| |||
seq2  AGT-AGTATTTGGG-TTGCTGC-AACAA--CCTGTA-GGCTGGGGG-CAC  992

seq1  AAGCTCTGGGGAGGATTTTCCAGAATGGTGGAGCTTCTGTGTCATATGGC  1048
       ||||||  ||| |||||  |||||||||| ||| |||||||| ||||||
seq2  -AGCTCT--GGAAGATTT--CAGAATGGTGAAGC-TCTGTGTC-TATGGC  1035

seq1  TTATTTTC  1056
      ||||||||
seq2  TTATTTTC  1043

seq1: chr5_148603935_148604527
seq2: B6Ng01-013N10.g_68_660 (reverse)

seq1  CACACACACACACACACACACACACACAAATAAATCTAAAAAAGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAAATAAATCTAAAAAAGTTTTTT  50

seq1  AAATGGCCTGAAATGGGTATCTTTTACATACACACATGTATTTTCAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCTGAAATGGGTATCTTTTACATACACACATGTATTTTCAATAT  100

seq1  ATATTTAAATATATAAAATATATTTAGAATAGTAATAATTAAATATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATATATAAAATATATTTAGAATAGTAATAATTAAATATATTG  150

seq1  TAAATATATTATAAAATGATTATATTATATAACTACATTCTATAATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTATAAAATGATTATATTATATAACTACATTCTATAATTATT  200

seq1  AACTACATTAATTATATTGTAGCATTAATAATCATAGTAACAATGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTAATTATATTGTAGCATTAATAATCATAGTAACAATGAATAT  250

seq1  GTTTTATAATGTATAATAATATATCATATAATAATATTTAAATATATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAATGTATAATAATATATCATATAATAATATTTAAATATATTTA  300

seq1  ATATATTGGTGTAATTATATAAGATATTAATATATATGTGTGTGTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGGTGTAATTATATAAGATATTAATATATATGTGTGTGTATTTA  350

seq1  CATATATGCATACATATACTTGACATCTGTCACCACAAGAAGAATCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCATACATATACTTGACATCTGTCACCACAAGAAGAATCTGTG  400

seq1  CACACTGCAGCAGCATCTCACATCGTTAGTGGTTTCATGTCTCAACGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCAGCAGCATCTCACATCGTTAGTGGTTTCATGTCTCAACGCAG  450

seq1  CTGTAATCAGCTAGGATTTCAGCTGCTGGTGAAGACAATGGGGGAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCAGCTAGGATTTCAGCTGCTGGTGAAGACAATGGGGGAGCTGG  500

seq1  AATCTCTGGGGAGAATCTCACTTCATGGGTAAATCAAAGGGAAAGCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGGGGAGAATCTCACTTCATGGGTAAATCAAAGGGAAAGCCCTA  550

seq1  ACATAGGGCAGGCCTGATTCTTAGAAACAACACATCAGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGGCAGGCCTGATTCTTAGAAACAACACATCAGAATTC  593