BAC Information

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BAC

Clone NameB6Ng01-013P17
Chromosome5 (Build37)
Map Location 26,874,413 - 26,937,989
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013P17.bB6Ng01-013P17.g
ACCDH848657DH848658
length1,047997
definitionDH848657|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P17, 5' end.DH848658|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,874,413 - 26,875,447)(26,936,991 - 26,937,989)
sequence
gaattctttctgcacttgagactcattattctagtttatcccattgctgt
gataaaactgaccagaagcaatttaggggacggaagtggttatatgactt
atgcttccaggtcacagtccatcactgagggaaatgagggaggaactcaa
gcaggaacccgaggcagaaactgtggagaaaccctgctttctggctgcag
gggaataagggtcggggttctgggtgtgatgggagcttgggtgatcgaag
gagctcagctgtctaagtttctaaggacaattgctttgctcacatggtag
ggaagcagataagatttagatattgctgtgtatatagatcactttacatt
ggtcttggcaccaacttagccagcctttaaaaatgcccacctataggtga
attcagaatttggtctatgtgggattctattcaataataaagcaatgcat
tactgatttggtcccatatggacatatttgcaatactgaccaaggaagta
tgaagaatccttgttaattgcaaaccaagagagccagaaagcaactctgg
gttgtctaggacagggcctggaggccttgactaatggggtttgggagtgg
agcttctgtggtgatggcaaaactgactgaactgtagagtctagtgagtc
tccacacaggctcaggtgtagacagaaagaattcttctctcacaagtcaa
ggaggaaagaaaatatgatgtttgtcagtatggagtgtgtgccagcggtc
tttgccccttggttctttctttgctgacatgtggcactctgcctgtgtgt
agaaaacatgttggaagacagattgcctcagaaaggcctctcttacttct
catgtccagtctgccctttttatatagcccaggaacctctctggcaaggg
atggtggcttaccagtaacgctgagtcaaccctgcctcaattaaagtccg
ggaccagtaaccattaccatgcctgcaggtagtttgagtttggcagttct
tcaggtgaaactttcctctaaaatgactccggctgggtcagggagcc
gaattccctaattttcagatctttctgttctgtcccaaaggaactgaacc
aagaagtatacttctctctgcctcaagatgattctttcctcctgaccagt
gctctgacctggctcaggggataactctttctctgtccttctgtctttgg
ggccctgttttctgtgtttaaagataacagcatgatcatggaattacgat
gttcccttaaccacacgaggaagagtgagtggctcccactgagtcccaca
tgccatggtggttcctctctctacttcaaggcagccgtgtcacttgtcat
ggcagcagctaccacactggagttaacaggaacattctggagggcagagc
tatgtggaagagaaggtgggaaagtgacagaaatgttgggatggaagaag
aaggaagaaacccagatgaatcatggggactgcagatgtagttcatggac
acaagctacagcttttcatgcagttgtaaacagcttgacacccagggggt
ggttaccctttaagcagcatgtttcatatgtggtttgggtttacattctt
ttctctctaatagtaggtttagtaaacggtgatctgcacactctcaggga
ggctaattgattttaccattttttaaagcagcacattcagatgcacatgg
aaaccactacagctgcagagctcgctggagaagtgactgcaaggatctac
agcttaatatttataaaatattaatacgtttttctacatatttagccagt
gtctgtctggaacctctcagccactggtcagccactaggtcagacgggct
tcttgccttggaattaacaattcctctcctctcagaaatgagcaaaggcc
ttgggtaattcagtcactcatcctctgtgcccccacagtgttctttctgc
ttgcctcagtgtaccccacctctggtttcagcaaaattccaaataaaagc
aaggaggggtgctctcagctctctgggtgcttttcggggggctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26874413_26875447
seq2: B6Ng01-013P17.b_46_1092

seq1  GAATTCTTTCTGCACTTGAGACTCATTATTCTAGTTTATCCCATTGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCACTTGAGACTCATTATTCTAGTTTATCCCATTGCTGT  50

seq1  GATAAAACTGACCAGAAGCAATTTAGGGGACGGAAGTGGTTATATGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACTGACCAGAAGCAATTTAGGGGACGGAAGTGGTTATATGACTT  100

seq1  ATGCTTCCAGGTCACAGTCCATCACTGAGGGAAATGAGGGAGGAACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCAGGTCACAGTCCATCACTGAGGGAAATGAGGGAGGAACTCAA  150

seq1  GCAGGAACCCGAGGCAGAAACTGTGGAGAAACCCTGCTTTCTGGCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACCCGAGGCAGAAACTGTGGAGAAACCCTGCTTTCTGGCTGCAG  200

seq1  GGGAATAAGGGTCGGGGTTCTGGGTGTGATGGGAGCTTGGGTGATCGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAGGGTCGGGGTTCTGGGTGTGATGGGAGCTTGGGTGATCGAAG  250

seq1  GAGCTCAGCTGTCTAAGTTTCTAAGGACAATTGCTTTGCTCACATGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGCTGTCTAAGTTTCTAAGGACAATTGCTTTGCTCACATGGTAG  300

seq1  GGAAGCAGATAAGATTTAGATATTGCTGTGTATATAGATCACTTTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGATAAGATTTAGATATTGCTGTGTATATAGATCACTTTACATT  350

seq1  GGTCTTGGCACCAACTTAGCCAGCCTTTAAAAATGCCCACCTATAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGCACCAACTTAGCCAGCCTTTAAAAATGCCCACCTATAGGTGA  400

seq1  ATTCAGAATTTGGTCTATGTGGGATTCTATTCAATAATAAAGCAATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAATTTGGTCTATGTGGGATTCTATTCAATAATAAAGCAATGCAT  450

seq1  TACTGATTTGGTCCCATATGGACATATTTGCAATACTGACCAAGGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTTGGTCCCATATGGACATATTTGCAATACTGACCAAGGAAGTA  500

seq1  TGAAGAATCCTTGTTAATTGCAAACCAAGAGAGCCAGAAAGCAACTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCCTTGTTAATTGCAAACCAAGAGAGCCAGAAAGCAACTCTGG  550

seq1  GTTGTCTAGGACAGGGCCTGGAGGCCTTGACTAATGGGGTTTGGGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGGACAGGGCCTGGAGGCCTTGACTAATGGGGTTTGGGAGTGG  600

seq1  AGCTTCTGTGGTGATGGCAAAACTGACTGAACTGTAGAGTCTAGTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTGGTGATGGCAAAACTGACTGAACTGTAGAGTCTAGTGAGTC  650

seq1  TCCACACAGGCTCAGGTGTAGACAGAAAGAATTCTTCTCTCACAAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAGGCTCAGGTGTAGACAGAAAGAATTCTTCTCTCACAAGTCAA  700

seq1  GGAGGAAAGAAAATATGATGTTTGTCAAGTATGGAGTGTGTGCCAGCGGT  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAGGAAAGAAAATATGATGTTTGTC-AGTATGGAGTGTGTGCCAGCGGT  749

seq1  C-TTGCCCCTTGGTTCTTTC-TTGCTGACATGTGGCACTCTGCCTGTGTG  798
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTGCCCCTTGGTTCTTTCTTTGCTGACATGTGGCACTCTGCCTGTGTG  799

seq1  TAG-AAACATGTTGGAAGACAGATTGCCTCAGAAA-GCCTC-CTTAC-TC  844
      ||| ||||||||||||||||||||||||||||||| ||||| ||||| ||
seq2  TAGAAAACATGTTGGAAGACAGATTGCCTCAGAAAGGCCTCTCTTACTTC  849

seq1  TCATGCCCAGTCTGCCC-TTTTATATAGCCCAGG-ACCTC-CTGGC-AGG  890
      ||||| ||||||||||| |||||||||||||||| ||||| ||||| |||
seq2  TCATGTCCAGTCTGCCCTTTTTATATAGCCCAGGAACCTCTCTGGCAAGG  899

seq1  GATGGTG--CTACCAGT-ACGCTGAGTC-ACCCTGCTTCAGTTAACAGT-  935
      |||||||   ||||||| |||||||||| ||||||| ||| |||| ||| 
seq2  GATGGTGGCTTACCAGTAACGCTGAGTCAACCCTGCCTCAATTAA-AGTC  948

seq1  CGGGA-CAGTAGCCATAACCATGCCTGCAGGTTAGTTTGAGTTTGGCAGT  984
      ||||| ||||| |||| |||||||||||||| ||||||||||||||||||
seq2  CGGGACCAGTAACCATTACCATGCCTGCAGG-TAGTTTGAGTTTGGCAGT  997

seq1  TCTTCAGTGGAAGCTTTCCTCTGAGATGACTCCAGGCTGGGTCAGGAAGC  1034
      |||||||  ||| ||||||||| | |||||||| |||||||||||| |||
seq2  TCTTCAGGTGAAACTTTCCTCTAAAATGACTCC-GGCTGGGTCAGGGAGC  1046

seq1  C  1035
      |
seq2  C  1047

seq1: chr5_26936991_26937989
seq2: B6Ng01-013P17.g_66_1062 (reverse)

seq1  TCAAAGCCCCCCGAAAAGCACCCAAGAGAGCTGAAGAGCACCCCTCCTTT  50
      ||||||||||||||||||||||| ||||||||| ||||||||||||| ||
seq2  TCAAAGCCCCCCGAAAAGCACCC-AGAGAGCTG-AGAGCACCCCTCC-TT  47

seq1  GCTTTTTATTTGGATTTTTGCTGAAACCAGAG--TGGGTACACTGAGGCA  98
      || ||||||||||| |||||||||||||||||   |||||||||||||||
seq2  GC-TTTTATTTGGAATTTTGCTGAAACCAGAGGTGGGGTACACTGAGGCA  96

seq1  AGCAGAAAGGACACTGTGGGGGCACAGGAGGATGAGTGACTGAATTA-CC  147
      ||||||||| |||||||||||||||| |||||||||||||||||||| ||
seq2  AGCAGAAAGAACACTGTGGGGGCACA-GAGGATGAGTGACTGAATTACCC  145

seq1  AAGGCCTTTGCTCATTTCTGAGAGGAGAGGAATTGTTAATTCCAAGGCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTTGCTCATTTCTGAGAGGAGAGGAATTGTTAATTCCAAGGCAA  195

seq1  GAAGCCCTTCTGACCTAGTGGCTGACCAGTGGCTGAGAGGTTCCAGACAG  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCGTCTGACCTAGTGGCTGACCAGTGGCTGAGAGGTTCCAGACAG  245

seq1  ACACTGGCTAAATATGTAGAAAAACGTATTAATATTTTATAAATATTAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTAAATATGTAGAAAAACGTATTAATATTTTATAAATATTAAG  295

seq1  CTGTAGATCCTTGCAGTCACTTCTCCAGCGAGCTCTGCAGCTGTAGTGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATCCTTGCAGTCACTTCTCCAGCGAGCTCTGCAGCTGTAGTGGT  345

seq1  TTCCATGTGCATCTGAATGTGCTGCTTTAAAAAATGGTAAAATCAATTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGCATCTGAATGTGCTGCTTTAAAAAATGGTAAAATCAATTAG  395

seq1  CCTCCCTGAGAGTGTGCAGATCACCGTTTACTAAACCTACTATTAGAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGAGAGTGTGCAGATCACCGTTTACTAAACCTACTATTAGAGAG  445

seq1  AAAAGAATGTAAACCCAAACCACATATGAAACATGCTGCTTAAAGGGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGTAAACCCAAACCACATATGAAACATGCTGCTTAAAGGGTAA  495

seq1  CCACCCCCTGGGTGTCAAGCTGTTTACAACTGCATGAAAAGCTGTAGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCTGGGTGTCAAGCTGTTTACAACTGCATGAAAAGCTGTAGCTT  545

seq1  GTGTCCATGAACTACATCTGCAGTCCCCATGATTCATCTGGGTTTCTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATGAACTACATCTGCAGTCCCCATGATTCATCTGGGTTTCTTCC  595

seq1  TTCTTCTTCCATCCCAACATTTCTGTCACTTTCCCACCTTCTCTTCCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCATCCCAACATTTCTGTCACTTTCCCACCTTCTCTTCCACA  645

seq1  TAGCTCTGCCCTCCAGAATGTTCCTGTTAACTCCAGTGTGGTAGCTGCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGCCCTCCAGAATGTTCCTGTTAACTCCAGTGTGGTAGCTGCTG  695

seq1  CCATGACAAGTGACACGGCTGCCTTGAAGTAGAGAGAGGAACCACCATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAAGTGACACGGCTGCCTTGAAGTAGAGAGAGGAACCACCATGG  745

seq1  CATGTGGGACTCAGTGGGAGCCACTCACTCTTCCTCGTGTGGTTAAGGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGACTCAGTGGGAGCCACTCACTCTTCCTCGTGTGGTTAAGGGA  795

seq1  ACATCGTAATTCCATGATCATGCTGTTATCTTTAAACACAGAAAACAGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGTAATTCCATGATCATGCTGTTATCTTTAAACACAGAAAACAGGG  845

seq1  CCCCAAAGACAGAAGGACAGAGAAAGAGTTATCCCCTGAGCCAGGTCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGACAGAAGGACAGAGAAAGAGTTATCCCCTGAGCCAGGTCAGA  895

seq1  GCACTGGTCAGGAGGAAAGAATCATCTTGAGGCAGAGAGAAGTATACTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTCAGGAGGAAAGAATCATCTTGAGGCAGAGAGAAGTATACTTC  945

seq1  TTGGTTCAGTTCCTTTGGGACAGAACAGAAAGATCTGAAAATTAGGGAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAGTTCCTTTGGGACAGAACAGAAAGATCTGAAAATTAGGGAAT  995

seq1  TC  999
      ||
seq2  TC  997