BAC Information

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BAC

Clone NameB6Ng01-014B21
Chromosome5 (Build37)
Map Location 16,473,596 - 16,474,776
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B21.bB6Ng01-014B21.g
ACCDH848751DH848752
length1,1911,177
definitionDH848751|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B21, 5' end.DH848752|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaatctctaatggtcgagaagcacttaaagacatg
ttcaacatccttagtcatcagagtaatgcaaatcaaaatgaccctgagat
tccatcttatacccttcagaatggctaaggtcaagtgacaacatgtagtg
atgaggatgtggggcaatgagaacactcatccattgctggtgggagtgta
aacttgtacagccactttggaaatcaatttggtggattttggattaattc
tatcccaagaccaacctatacccctccaaggcatatacctaaagatcccc
tatcttaccacaaggacacttgctcaactacctccttagaaactttattg
gtaatagccagaatctggaaaaaaatcttagtgtccctcaactgaataaa
tggataaagaaaatatggtacatctacacaatagaatactatttgactat
taaaaacaaaaacatcatgaaaatttcaggctaatggatgaagctagaaa
atatcctaagtgagggaacccagacccagaaagacatgacagagaagagc
ctacataaatgtctcctgagaggcttcatccaacaggatcttgttattga
tcaatttacagctttttgaaggccctccacacagatttccatagtgcctg
tacaattttgcattcccatcagcaatgattaagtttccctttgattgcat
ctttctcagtgtgtactgtcatttgttttattgattttggccattcagtc
tgaggaaagatgaaatctgaaagcagttttaatttgcatttttattgtgg
ataataactctgaacagttaaaaaatgtgtctcaaccatttgtgcttcat
cttttgagaactctttgtttagttctataactcatcttgattaatatttt
cttgactttaagttttgctttttatatatttatatattgtatatttgatt
agatatagatgtatacatatctaatatacatatagttagtcagaatacat
ttgtaagatttctttcatcctataggctgctatatacttggacgatgtat
acttactatacggagtcttatatttaaataatatttttaacaatgggttc
attttgaataatgaatgtaggattactgttttcagttacggagactatgg
atctagtcattgaagtcaaattcaaaccctgcggtattgga
gaattccccagacaggattcttcactaggcccaaaagaaacagcataatc
agacatttactagaacccctggtggtgggcttaacaatagactagcatta
cacctggctcccttcttagtagcagcctggtccccaccttcttttgatgt
atacattccttttgtattgtgtcactgtaacttgacagatgtatcttacc
tggtttcttgtcgctctcctgtataaaaagtatgatgctctacttgaaaa
attacattcagattctacagaatctcgtgtgtcacttctgtctgtcattt
gtgaactccttgtccacctgcaactagagacccattctacgccaacaggg
accaaaaaaggtctgcggcagagcatagccctaagaactttaattaattt
tctttttcttaagaaagcactgtatcctatcaagccacaataaacccact
aaggtaccttaacatcttcatcaattttgataggaaaggtctatatagtg
tgctttcaaaagcacaactagagtattttagtaaggaaagataaagcctg
tgatgtataagtttgttgatgaggtcatatgttctatgcagacagttccc
tccctgttttacatacatacatacatatatatatgcatgtatgtatgaaa
tattaattatatattaaatatagtgcaatattttagagattaaatatatt
aaattatatgtatgttaaatatatatgtcatatatatgtatatataatat
ataatggcataaatatacatgtcattttggtgcacagcttaatttggtgt
gagtacctattttgtgtgtctgaattactcgtttatggatttgtattagt
atttagagcattttcattctttggctggaagtcagttgtggaaaagaaaa
actcaagggatcatatgtccctgtcgagagtatattcatctcatcaaatt
gcctgtgctattttttcacctggcattcctgccaaggactgcactggtgt
aaacgacaattatttctcagtgtagatcctataagaatttcggagcacat
cagaagaaggctttcaattctctatcgaactgtgctgaactgggtttgca
caccacaactggttatggacacacccgagagattctggcttacagaagaa
tttcaattttacgagcatgagtagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16473596_16474776
seq2: B6Ng01-014B21.g_85_1243 (reverse)

seq1  TTTCTACTCATTGCTCTGTAAAATATTGGAAATTTCTTCTTGCTAAAGAG  50
      |||||||||| ||||| |||||  ||||  || |||||||   ||   ||
seq2  TTTCTACTCA-TGCTC-GTAAA--ATTG--AAATTCTTCT--GTA---AG  39

seq1  CCAGAACTCCTGCAGGCTGCTCCATTAACCAGTCTGTGCTGTGCAAACCC  100
      |||||| ||   | ||    |||| |||||||| |||| |||||||||||
seq2  CCAGAA-TCTCTCGGGTGTGTCCA-TAACCAGT-TGTGGTGTGCAAACCC  86

seq1  CAGTCAGCACAGTTCCGGTAGGAGATTTGGAAGCCTCTTTCTGATGTGGC  150
         ||||||||||| || || |||| ||| ||||||  ||||||||| ||
seq2  AGTTCAGCACAGTT-CGATA-GAGAATTGAAAGCCTTCTTCTGATGT-GC  133

seq1  TCGGAAA-TCTTATAGGATTCTAACACTGAGAAATAATTGTCGTTTAACA  199
      || |||| |||||||||| ||| ||||||||||||||||||||||| |||
seq2  TCCGAAATTCTTATAGGA-TCT-ACACTGAGAAATAATTGTCGTTT-ACA  180

seq1  CCAGTGCAGTCTTTGGCAGGAATGCCAAGTTGAAAAAATAGCACAGGCAA  249
      ||||||||||| |||||||||||||| || ||||||||||||||||||||
seq2  CCAGTGCAGTCCTTGGCAGGAATGCC-AGGTGAAAAAATAGCACAGGCAA  229

seq1  TTTGATGAGGATGAATATACTCTCCGACAGGGACATATGATCCCTTGAGT  299
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGATGA-GATGAATATACTCT-CGACAGGGACATATGATCCCTTGAGT  277

seq1  TTTTCTTTTCCACAACTGACTTCCAGCCAAAGAATGAAAATGCTCTAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCCACAACTGACTTCCAGCCAAAGAATGAAAATGCTCTAAAT  327

seq1  ACTAATACAAATCCATAAACGAGTAATTCAGACACACAAAATAGGTACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATACAAATCCATAAACGAGTAATTCAGACACACAAAATAGGTACTC  377

seq1  ACACCAAATTAAGCTGTGCACCAAAATGACATGTATATTTATGCCATTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAATTAAGCTGTGCACCAAAATGACATGTATATTTATGCCATTAT  427

seq1  ATATTATATATACATATATATGACATATATATTTAACATACATATAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATATACATATATATGACATATATATTTAACATACATATAATTT  477

seq1  AATATATTTAATCTCTAAAATATTGCACTATATTTAATATATAATTAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTAATCTCTAAAATATTGCACTATATTTAATATATAATTAATA  527

seq1  TTTCATACATACATGCATATATATATGTATGTATGTATGTAAAACAGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACATACATGCATATATATATGTATGTATGTATGTAAAACAGGGA  577

seq1  GGGAACTGTCTGCATAGAACATATGACCTCATCAACAAACTTATACATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGTCTGCATAGAACATATGACCTCATCAACAAACTTATACATCA  627

seq1  CAGGCTTTATCTTTCCTTACTAAAATACTCTAGTTGTGCTTTTGAAAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTATCTTTCCTTACTAAAATACTCTAGTTGTGCTTTTGAAAGCA  677

seq1  CACTATATAGACCTTTCCTATCAAAATTGATGAAGATGTTAAGGTACCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATAGACCTTTCCTATCAAAATTGATGAAGATGTTAAGGTACCTT  727

seq1  AGTGGGTTTATTGTGGCTTGATAGGATACAGTGCTTTCTTAAGAAAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTTATTGTGGCTTGATAGGATACAGTGCTTTCTTAAGAAAAAGA  777

seq1  AAATTAATTAAAGTTCTTAGGGCTATGCTCTGCCGCAGACCTTTTTTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAAAGTTCTTAGGGCTATGCTCTGCCGCAGACCTTTTTTGGT  827

seq1  CCCTGTTGGCGTAGAATGGGTCTCTAGTTGCAGGTGGACAAGGAGTTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGGCGTAGAATGGGTCTCTAGTTGCAGGTGGACAAGGAGTTCAC  877

seq1  AAATGACAGACAGAAGTGACACACGAGATTCTGTAGAATCTGAATGTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAGACAGAAGTGACACACGAGATTCTGTAGAATCTGAATGTAAT  927

seq1  TTTTCAAGTAGAGCATCATACTTTTTATACAGGAGAGCGACAAGAAACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGTAGAGCATCATACTTTTTATACAGGAGAGCGACAAGAAACCA  977

seq1  GGTAAGATACATCTGTCAAGTTACAGTGACACAATACAAAAGGAATGTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATACATCTGTCAAGTTACAGTGACACAATACAAAAGGAATGTAT  1027

seq1  ACATCAAAAGAAGGTGGGGACCAGGCTGCTACTAAGAAGGGAGCCAGGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAAGAAGGTGGGGACCAGGCTGCTACTAAGAAGGGAGCCAGGTG  1077

seq1  TAATGCTAGTCTATTGTTAAGCCCACCACCAGGGGTTCTAGTAAATGTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAGTCTATTGTTAAGCCCACCACCAGGGGTTCTAGTAAATGTCT  1127

seq1  GATTATGCTGTTTCTTTTGGGCCTAGTGAAGA  1181
      ||||||||||||||||||||||||||||||||
seq2  GATTATGCTGTTTCTTTTGGGCCTAGTGAAGA  1159