BAC Information

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BAC

Clone NameB6Ng01-014E17
Chromosome5 (Build37)
Map Location 75,167,461 - 75,339,828
singlet/doubletdoublet
Overlap genenone
Upstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
Downstream geneEG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E17.bB6Ng01-014E17.g
ACCDH848881DH848882
length333229
definitionDH848881|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E17, 5' end.DH848882|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,167,461 - 75,167,793)(75,339,600 - 75,339,828)
sequence
agcttcgttggatgccttgagtcttcggttctccgatgggctcaagaaca
gaaaaaattttgtagattgtacagattattcccattgttagtatgataac
aatgcacttctgtggtttttacatcctaagtagaagcagaacttgcaaca
atcttaccagcttagaatctaaaattcatctgatgtgtaaggagaagggg
gactgtgctgaggggccagacatgttctacaggaaagaggaggggaacag
gagaaggccatggggtgggccaaagacagatatctagttctctctctctc
tctctctctctctctctctctctctctctctct
tttcctcataattgggtcatgatgctcatcagtatgttgtttggggatga
actgtgtggccccccaaatagtgctatagtgcttgatcaggtctgttgag
gcaatctactgctgcaaggcccgcaagagaaagacatcgctgcttgtggg
ctgatttgatttgatttacacaggtttgggtgtttgtttgtttgtgtttg
tttttgtttattttttggttggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_75167461_75167793
seq2: B6Ng01-014E17.b_52_384

seq1  AGCTTCGTTGGATGCCTTGAGTCTTCGGTTCTCCGATGGGCTCAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCGTTGGATGCCTTGAGTCTTCGGTTCTCCGATGGGCTCAAGAACA  50

seq1  GAAAAAATTTTGTAGATTGTACAGATTATTCCCATTGTTAGTATGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTTTGTAGATTGTACAGATTATTCCCATTGTTAGTATGATAAC  100

seq1  AATGCACTTCTGTGGTTTTTACATCCTAAGTAGAAGCAGAACTTGCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTTCTGTGGTTTTTACATCCTAAGTAGAAGCAGAACTTGCAACA  150

seq1  ATCTTACCAGCTTAGAATCTAAAATTCATCTGATGTGTAAGGAGAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCAGCTTAGAATCTAAAATTCATCTGATGTGTAAGGAGAAGGGG  200

seq1  GACTGTGCTGAGGGGCCAGACATGTTCTACAGGAAAGAGGAGGGGAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCTGAGGGGCCAGACATGTTCTACAGGAAAGAGGAGGGGAACAG  250

seq1  GAGAAGGCCATGGGGTGGGCCAAAGACAGATATCTAGTTCTCTCTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCCATGGGGTGGGCCAAAGACAGATATCTAGTTCTCTCTCTCTC  300

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  333
      |||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  333

seq1: chr5_75339600_75339828
seq2: B6Ng01-014E17.g_71_299 (reverse)

seq1  CAACCAACCAACCAAAAAATAAACAAAAACAAACACAAACAAACAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAACCAAAAAATAAACAAAAACAAACACAAACAAACAAACAC  50

seq1  CCAAACCTGTGTAAATCAAATCAAATCAGCCCACAAGCAGCGATGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTGTGTAAATCAAATCAAATCAGCCCACAAGCAGCGATGTCTTT  100

seq1  CTCTTGCGGGCCTTGCAGCAGTAGATTGCCTCAACAGACCTGATCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCGGGCCTTGCAGCAGTAGATTGCCTCAACAGACCTGATCAAGCA  150

seq1  CTATAGCACTATTTGGGGGGCCACACAGTTCATCCCCAAACAACATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCACTATTTGGGGGGCCACACAGTTCATCCCCAAACAACATACTG  200

seq1  ATGAGCATCATGACCCAATTATGAGGAAA  229
      |||||||||||||||||||||||||||||
seq2  ATGAGCATCATGACCCAATTATGAGGAAA  229