BAC Information

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BAC

Clone NameB6Ng01-014F05
Chromosome5 (Build37)
Map Location 148,872,735 - 149,011,269
singlet/doubletdoublet
Overlap geneC130038G02Rik, LOC100041819
Upstream geneLnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneSlc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F05.bB6Ng01-014F05.g
ACCDH848904DH848905
length1,072674
definitionDH848904|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F05, 5' end.DH848905|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,872,735 - 148,873,827)(149,010,597 - 149,011,269)
sequence
gaattcaaggagaattaactcccaagtgatgcccaaggaatacgggcagt
tatctcaaataatgctttgacccctaaatgttaaaagttcatgaattacc
aaatattcagagatgtgcccttgaggaggcaaagcgcccaggcgggcatt
cctcagagggagccgtttttattaaagcagaacgtatttatgtgtactaa
aaattagaggcagttctgaattattcaaggaggaagctaagtttcattcc
cccctgaatgtaaagtattttgaagtgaggtgagctcatgtctaaaatat
tagcctaatatgagagcaagcctctttgcagcacaggcggctgcttgttc
agctctcctcggagtcgcaggcgatggtttgtaacacagttctgtgattc
cttgtttcagtgggggttgggccagtctctaatgaacaggctaatggctt
cgaacctgttctttcacaggcttaggggtgctgagggagacctggatgga
ctcttggtgatttaacatgctctgttgggcacgttggagtacatcgggga
gtgctgagggctccaattctgcatggacacttgggatgaggaactgggag
acgaggcggccttgggacattgatggtgactcacatggaccttgtgggaa
tgaaatttaattaaccaatgaacgatgctggaaaatcgagctggggtcag
gagatctttgtagagagggttttaaaaggaaccacatgtagttctggtac
cgagtgataaacaagggacagagggatggctcagtggttaagagcactgc
ctgctgctcttccagaggaccctgtttctattcggatcaccagcatagct
gctcacaaccaccttggactccagttctgggagatctaatgccctcttct
ggtctctgaaggtactgcatgcacacgggataatacatgcaggcaagcca
ctctaaaacaagctaaacaacaacaacacaccacacaacattccaaaaaa
aaaacctatctgctgcactcacttgctctgaccaagaaagatcctcatgg
atcggtagtcatcccgtgctgg
gaattccaggacagccaaggctacacagagaaaccctgtctcagaaaaac
caccaccaacaacaaaaacaaaaacaaaaatagcaaaacaaacaacgaat
gaaagaacgaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaga
aaggaaggaagaaaggaaggaaggagaaaataaaggaggaaaattgactt
tgtagactactgtgagaattgaaagagttaatgccaggagatttgtaagt
tgacaaagggctctggagagatgtctcagcatttaagaacatttggtgtt
cttgcagaggatcagggttcaattccaggaccctcatggtcagtctcaac
tgcctgtaactctggttccaggagaacaggtgtcccattctggccttctt
gggtactaggcacatatacatacatgtctacaaaacctcacacagaaaat
aaaaaaaatttaaaatgtttttgcaggagttagcccaagaaaacacatta
ctgtctggtacactgcataccctgatgtgttattaccttgcacactgact
tcaatttctacagctagtcattttaatgaatacatttatcaaaagcacat
gggaagcctgaaacgaagactgacatcagatgcctaaaagaacatgggag
gaaaaggtgtgtggggggtgtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148872735_148873827
seq2: B6Ng01-014F05.b_48_1119

seq1  GAATTCAAGGAGAATTAACTCCCAAGTGATGCCCAAGGAATACGGGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGAATTAACTCCCAAGTGATGCCCAAGGAATACGGGCAGT  50

seq1  TATCTCAAATAATGCTTTGACCCCTAAATGTTAAAAGTTCATGAATTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAATAATGCTTTGACCCCTAAATGTTAAAAGTTCATGAATTACC  100

seq1  AAATATTCAGAGATGTGCCCTTGAGGAGGCAAAGCGCCCAGGCGGGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCAGAGATGTGCCCTTGAGGAGGCAAAGCGCCCAGGCGGGCATT  150

seq1  CCTCAGAGGGAGCCGTTTTTATTAAAGCAGAACGTATTTATGTGTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGGAGCCGTTTTTATTAAAGCAGAACGTATTTATGTGTACTAA  200

seq1  AAATTAGAGGCAGTTCTGAATTATTCAAGGAGGAAGCTAAGTTTCATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAGGCAGTTCTGAATTATTCAAGGAGGAAGCTAAGTTTCATTCC  250

seq1  CCCCTGAATGTAAAGTATTTTGAAGTGAGGTGAGCTCATGTCTAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAATGTAAAGTATTTTGAAGTGAGGTGAGCTCATGTCTAAAATAT  300

seq1  TAGCCTAATATGAGAGCAAGCCTCTTTGCAGCACAGGCGGCTGCTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAATATGAGAGCAAGCCTCTTTGCAGCACAGGCGGCTGCTTGTTC  350

seq1  AGCTCTCCTCGGAGTCGCAGGCGATGGTTTGTAACACAGTTCTGTGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCTCGGAGTCGCAGGCGATGGTTTGTAACACAGTTCTGTGATTC  400

seq1  CTTGTTTCAGTGGGGGTTGGGCCAGTCTCTAATGAACAGGCTAATGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCAGTGGGGGTTGGGCCAGTCTCTAATGAACAGGCTAATGGCTT  450

seq1  CGAACCTGTTCTTTCACAGGCTTAGGGGTGCTGAGGGAGACCTGGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCTGTTCTTTCACAGGCTTAGGGGTGCTGAGGGAGACCTGGATGGA  500

seq1  CTCTTGGTGATTTAACATGCTCTGTTGGGCACGTTGGAGTACATCGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGATTTAACATGCTCTGTTGGGCACGTTGGAGTACATCGGGGA  550

seq1  GTGCTGAGGGCTCCAATTCTGCATGGACACTTGGGATGAGGAACTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGGCTCCAATTCTGCATGGACACTTGGGATGAGGAACTGGGAG  600

seq1  ACGAGGCGGCCTTGGGACATTGATGGTGACTCACATGGACCTTGTGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCGGCCTTGGGACATTGATGGTGACTCACATGGACCTTGTGGGAA  650

seq1  TGAAATTTAATTAACCAATGAACGATGCTGGAAAATCGAGCTGGGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTAATTAACCAATGAACGATGCTGGAAAATCGAGCTGGGGTCAG  700

seq1  GAGATCTTTGTAGAGAGGGTTTTAAAAGGAACCACATGTAGTTCTGGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTTGTAGAGAGGGTTTTAAAAGGAACCACATGTAGTTCTGGTAC  750

seq1  CGAGTGATAAACAAGGGACAGAGGGATGGCTCAGTGGTTAAGAGCACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGATAAACAAGGGACAGAGGGATGGCTCAGTGGTTAAGAGCACTGC  800

seq1  CTGCTGCTCTTCCAGAGGACCCTGTTTCTATTCGGATCACCAGCATAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTCTTCCAGAGGACCCTGTTTCTATTCGGATCACCAGCATAGCT  850

seq1  GCTCACAACCACCTTGGACTCCAGTTCTGGGAGATCTAATGCCCTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCACCTTGGACTCCAGTTCTGGGAGATCTAATGCCCTCTTCT  900

seq1  GGTCTCTGAAGGTACTGCATGCACACGGTATATATACATGCAGGCAAGCC  950
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  GGTCTCTGAAGGTACTGCATGCACACGGGATA-ATACATGCAGGCAAGCC  949

seq1  ACTCATAAAACAAAGCAAAAACAACAACAACAACAACAACAACAACAATT  1000
      |||| |||||| ||||  ||||||||||||| ||| ||   ||||| |||
seq2  ACTC-TAAAAC-AAGC-TAAACAACAACAAC-ACACCA--CACAAC-ATT  992

seq1  ACAAAAAAAAAAAAACCCTATCTGCTGCACTCACTTGCTTCCTGCACCAA  1050
       |||||||||||    |||||||||||||||||||||||  ||| |||||
seq2  CCAAAAAAAAAA----CCTATCTGCTGCACTCACTTGCT--CTG-ACCAA  1035

seq1  GGAAAAGATCCCTCAATGGATTCTGTAGTCATCACGTTGCTGG  1093
      |  |||||| |||| ||||| || ||||||||| || ||||||
seq2  G--AAAGAT-CCTC-ATGGA-TCGGTAGTCATCCCG-TGCTGG  1072

seq1: chr5_149010597_149011269
seq2: B6Ng01-014F05.g_68_741 (reverse)

seq1  ATGACACCCCCCACACACCTTTTCCTCCCATGTTC-TTTAGGCATCTGAT  49
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGACACCCCCCACACACCTTTTCCTCCCATGTTCTTTTAGGCATCTGAT  50

seq1  GTCAGTCTTCGTTTCAGGCTTCCCATGTGCTTTTGATAAATGTATTCATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTTCGTTTCAGGCTTCCCATGTGCTTTTGATAAATGTATTCATT  100

seq1  AAAATGACTAGCTGTAGAAATTGAAGTCAGTGTGCAAGGTAATAACACAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTAGCTGTAGAAATTGAAGTCAGTGTGCAAGGTAATAACACAT  150

seq1  CAGGGTATGCAGTGTACCAGACAGTAATGTGTTTTCTTGGGCTAACTCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATGCAGTGTACCAGACAGTAATGTGTTTTCTTGGGCTAACTCCT  200

seq1  GCAAAAACATTTTAAATTTTTTTTATTTTCTGTGTGAGGTTTTGTAGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACATTTTAAATTTTTTTTATTTTCTGTGTGAGGTTTTGTAGACA  250

seq1  TGTATGTATATGTGCCTAGTACCCAAGAAGGCCAGAATGGGACACCTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATATGTGCCTAGTACCCAAGAAGGCCAGAATGGGACACCTGTT  300

seq1  CTCCTGGAACCAGAGTTACAGGCAGTTGAGACTGACCATGAGGGTCCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAACCAGAGTTACAGGCAGTTGAGACTGACCATGAGGGTCCTGG  350

seq1  AATTGAACCCTGATCCTCTGCAAGAACACCAAATGTTCTTAAATGCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACCCTGATCCTCTGCAAGAACACCAAATGTTCTTAAATGCTGAG  400

seq1  ACATCTCTCCAGAGCCCTTTGTCAACTTACAAATCTCCTGGCATTAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCCAGAGCCCTTTGTCAACTTACAAATCTCCTGGCATTAACTC  450

seq1  TTTCAATTCTCACAGTAGTCTACAAAGTCAATTTTCCTCCTTTATTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTCTCACAGTAGTCTACAAAGTCAATTTTCCTCCTTTATTTTCT  500

seq1  CCTTCCTTCCTTTCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTTCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCC  550

seq1  TTCCTTCCTTCCTTTCGTTCTTTCATTCGTTGTTTGTTTTGCTATTTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTTCGTTCTTTCATTCGTTGTTTGTTTTGCTATTTTTG  600

seq1  TTTTTGTTTTTGTTGTTGGTGGTGGTTTTTCTGAGACAGGGTTTCTCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTGTTGGTGGTGGTTTTTCTGAGACAGGGTTTCTCTGT  650

seq1  GTAGCCTTGGCTGTCCTGGAATTC  673
      ||||||||||||||||||||||||
seq2  GTAGCCTTGGCTGTCCTGGAATTC  674