BAC Information

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BAC

Clone NameB6Ng01-014I04
Chromosome5 (Build37)
Map Location 13,281,692 - 13,433,555
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneEG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014I04.bB6Ng01-014I04.g
ACCDH849030DH849031
length1,251742
definitionDH849030|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I04, 5' end.DH849031|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,432,288 - 13,433,555)(13,281,692 - 13,282,433)
sequence
gaattccaggttttctcctcaggatataaaccagtgacctcatacttcca
acacaagacctatctatcaacactcttctccatgcaagagttccgttatg
cagcattcttcccagtgtatccaggactacataaagcagtgtccatttta
attagattcaaatgtgctcaactcccactaggatttttcgaacaatgcct
tatatttaccacatagtttctatgagaagtggagtgtagtttgtctttca
tcaaacccgataccttccagtccgtagagcttgcaccttgaaagaagttg
atgaactttgaccagggatacttccttcttccccaacaccttagcaaaat
caatgcaatgataaacaggttatctttactactatggaaatttctattgg
ggtagagtcttaatggtgatgacaatcacgggctgtggggttatcaaagg
cattccttgtggttgcattagatgtttccactttacgcccattgccttct
tttaaagtgagagacagaggtaaggaaaggtgaacatttaaatcctgtat
gcatactgataatctcaattttctagtaaaagtctatgcactctaactgt
caatgagatggtatttgttctaatgctgttaatcaactcttattcatgtt
taaatcagcctaatatggtttttacctataaacctatccagcttaatgga
aagactgagaacgatcccagagctgtttgtgctttgagcactatatttaa
ctctacagttgatttatggtgctgctactggcaagaatccgcatctttct
ctgcctctgtcagaccacatgtaaaatacctgcccctaaatagttctcag
gaaagctaaaaaagaaaggatgatgtaatgtctgaacattttagatcccc
tatccccctaaagatgttaaaagattttaattctttaaagatttctaaac
aactcattcgaattggaagttttttttgttgtgttctggaagaatctttg
tttgctcgctactttcttcttcagatagcttaaacatctgataaaaaagc
aaatggaaagaaaaagaatgatggttgtactttctgatgttttttttttt
ctgatcatattgaagagcttacgaatcctctatgaggaccattcctccct
gaacaattattctgctggaaggctccacctagcaagcactttttcttttc
gacttattagtgaattactttgtaccctccaatccatttccccatcaccc
a
gaattctcagagcttgtggtctccatttcatgtggtttctgtctagattc
agatgtcatttataaaaagaaagttgtcaaaaggaaaaaagacagcagat
aacacttgctaccctttcccttaagtcacatgtgtgtattcagtgtacca
agtcggtgactggcaaattcatttttagcattttataggtttgttgactt
tcaatgtaataggctctttttcttttttcaattgaatttgtttagattat
ctactctgatatgcttggcttcctgctccaatccattagatagagcacat
agaagattatttataactggcactcaattatcctgataatatttccttta
gttagcttgatattcatctaatctatatagtctactatacagtgttagat
ttattatgagatcaaagcaagtgtaatcatattctccattatgagtttta
tttcttcgtgtattttcaaaaaaatcattttttcctttctagtactgggg
attaaaactttggtctcatacatgctaagcaagtactttactattgagct
gaaactccacccaaactactttacttaggaaaatatgtgtcaaacccatt
tttagctgccagctccctggaatccttgttaaaggcgacagcacaaaatg
aatcctgactaaagcagacttttttttttatagctagacaaaaattggct
atcatctctgacatggtgcgtgcgtgcatgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13432288_13433555
seq2: B6Ng01-014I04.b_46_1296 (reverse)

seq1  TGGGTGATGGGGAATGGAATATGGAGTGTAAAAAGTAAATTAAAAATAAA  50
      ||||||||||||||  | || ||||| ||| ||||||| | |  ||    
seq2  TGGGTGATGGGGAAATGGAT-TGGAGGGTACAAAGTAATTCACTAA----  45

seq1  ATTAAGTCAGAAAAAAGAAAAAAAAGTGCTTGCTA-GTGGAGCCTTCCAG  99
        |||||| |||     || ||||||||||||||| ||||||||||||||
seq2  --TAAGTC-GAA-----AAGAAAAAGTGCTTGCTAGGTGGAGCCTTCCAG  87

seq1  CATGAATAATATGTTCAGTGATGAAATAGTCCTCATAGTAGAATCGTAAA  149
      || ||||||| ||||||| || | ||| ||||||||||  || |||| ||
seq2  CA-GAATAAT-TGTTCAGGGA-GGAATGGTCCTCATAGAGGATTCGT-AA  133

seq1  GCTCTTCATATTGATCAG-AAAAAAAAAACATCAGAAAGTACAAACATCA  198
      ||||||||   ||||||| ||||||||||||||||||||||||| |||||
seq2  GCTCTTCAATATGATCAGAAAAAAAAAAACATCAGAAAGTACAACCATCA  183

seq1  -TCTTTTTCTTTCCATTTGC-TTTTTATCAGATGTTTTAGCTATCTTGGA  246
       ||||||||||||||||||| |||||||||||||||| ||||||| || |
seq2  TTCTTTTTCTTTCCATTTGCTTTTTTATCAGATGTTTAAGCTATC-TGAA  232

seq1  GAAGAAGGTAGCGAGCAAACAAAGATTCTTCCAGAACAACAACAAAAAAA  296
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAGAAAGTAGCGAGCAAACAAAGATTCTTCCAGAAC-ACAACAAAAAAA  281

seq1  ACCTTCCAATTCGAATGAGTTGTTTAGAAATCTTTAAAGAATTAAAATCT  346
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  A-CTTCCAATTCGAATGAGTTGTTTAGAAATCTTTAAAGAATTAAAATC-  329

seq1  TTTTAACATCTTTAGGGGGATAGGGGATCTAAAATGTTCAGACATTACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATCTTTAGGGGGATAGGGGATCTAAAATGTTCAGACATTACAT  379

seq1  CATCCTTTCTTTTTTAGCTTTCCTGAGAACTATTTAGGGGCAGGTATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTCTTTTTTAGCTTTCCTGAGAACTATTTAGGGGCAGGTATTTT  429

seq1  ACATGTGGTCTGACAGAGGCAGAGAAAGATGCGGATTCTTGCCAGTAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTCTGACAGAGGCAGAGAAAGATGCGGATTCTTGCCAGTAGCA  479

seq1  GCACCATAAATCAACTGTAGAGTTAAATATAGTGCTCAAAGCACAAACAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATAAATCAACTGTAGAGTTAAATATAGTGCTCAAAGCACAAACAG  529

seq1  CTCTGGGATCGTTCTCAGTCTTTCCATTAAGCTGGATAGGTTTATAGGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGATCGTTCTCAGTCTTTCCATTAAGCTGGATAGGTTTATAGGTA  579

seq1  AAAACCATATTAGGCTGATTTAAACATGAATAAGAGTTGATTAACAGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATATTAGGCTGATTTAAACATGAATAAGAGTTGATTAACAGCAT  629

seq1  TAGAACAAATACCATCTCATTGACAGTTAGAGTGCATAGACTTTTACTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAATACCATCTCATTGACAGTTAGAGTGCATAGACTTTTACTAG  679

seq1  AAAATTGAGATTATCAGTATGCATACAGGATTTAAATGTTCACCTTTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAGATTATCAGTATGCATACAGGATTTAAATGTTCACCTTTCCT  729

seq1  TACCTCTGTCTCTCACTTTAAAAGAAGGCAATGGGCGTAAAGTGGAAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTCTCTCACTTTAAAAGAAGGCAATGGGCGTAAAGTGGAAACA  779

seq1  TCTAATGCAACCACAAGGAATGCCTTTGATAACCCCACAGCCCGTGATTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCAACCACAAGGAATGCCTTTGATAACCCCACAGCCCGTGATTG  829

seq1  TCATCACCATTAAGACTCTACCCCAATAGAAATTTCCATAGTAGTAAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCATTAAGACTCTACCCCAATAGAAATTTCCATAGTAGTAAAGA  879

seq1  TAACCTGTTTATCATTGCATTGATTTTGCTAAGGTGTTGGGGAAGAAGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTTTATCATTGCATTGATTTTGCTAAGGTGTTGGGGAAGAAGGA  929

seq1  AGTATCCCTGGTCAAAGTTCATCAACTTCTTTCAAGGTGCAAGCTCTACG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCTGGTCAAAGTTCATCAACTTCTTTCAAGGTGCAAGCTCTACG  979

seq1  GACTGGAAGGTATCGGGTTTGATGAAAGACAAACTACACTCCACTTCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGGTATCGGGTTTGATGAAAGACAAACTACACTCCACTTCTCA  1029

seq1  TAGAAACTATGTGGTAAATATAAGGCATTGTTCGAAAAATCCTAGTGGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTATGTGGTAAATATAAGGCATTGTTCGAAAAATCCTAGTGGGA  1079

seq1  GTTGAGCACATTTGAATCTAATTAAAATGGACACTGCTTTATGTAGTCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCACATTTGAATCTAATTAAAATGGACACTGCTTTATGTAGTCCT  1129

seq1  GGATACACTGGGAAGAATGCTGCATAACGGAACTCTTGCATGGAGAAGAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACTGGGAAGAATGCTGCATAACGGAACTCTTGCATGGAGAAGAG  1179

seq1  TGTTGATAGATAGGTCTTGTGTTGGAAGTATGAGGTCACTGGTTTATATC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATAGATAGGTCTTGTGTTGGAAGTATGAGGTCACTGGTTTATATC  1229

seq1  CTGAGGAGAAAACCTGGAATTC  1268
      ||||||||||||||||||||||
seq2  CTGAGGAGAAAACCTGGAATTC  1251

seq1: chr5_13281692_13282433
seq2: B6Ng01-014I04.g_64_805

seq1  GAATTCTCAGAGCTTGTGGTCTCCATTTCATGTGGTTTCTGTCTAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGCTTGTGGTCTCCATTTCATGTGGTTTCTGTCTAGATTC  50

seq1  AGATGTCATTTATAAAAAGAAAGTTGTCAAAAGGAAAAAAGACAGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCATTTATAAAAAGAAAGTTGTCAAAAGGAAAAAAGACAGCAGAT  100

seq1  AACACTTGCTACCCTTTCCCTTAAGTCACATGTGTGTATTCAGTGTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGCTACCCTTTCCCTTAAGTCACATGTGTGTATTCAGTGTACCA  150

seq1  AGTCGGTGACTGGCAAATTCATTTTTAGCATTTTATAGGTTTGTTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTGACTGGCAAATTCATTTTTAGCATTTTATAGGTTTGTTGACTT  200

seq1  TCAATGTAATAGGCTCTTTTTCTTTTTTCAATTGAATTTGTTTAGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTAATAGGCTCTTTTTCTTTTTTCAATTGAATTTGTTTAGATTAT  250

seq1  CTACTCTGATATGCTTGGCTTCCTGCTCCAATCCATTAGATAGAGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGATATGCTTGGCTTCCTGCTCCAATCCATTAGATAGAGCACAT  300

seq1  AGAAGATTATTTATAACTGGCACTCAATTATCCTGATAATATTTCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTATTTATAACTGGCACTCAATTATCCTGATAATATTTCCTTTA  350

seq1  GTTAGCTTGATATTCATCTAATCTATATAGTCTACTATACAGTGTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTGATATTCATCTAATCTATATAGTCTACTATACAGTGTTAGAT  400

seq1  TTATTATGAGATCAAAGCAAGTGTAATCATATTCTCCATTATGAGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGAGATCAAAGCAAGTGTAATCATATTCTCCATTATGAGTTTTA  450

seq1  TTTCTTCGTGTATTTTCAAAAAAATCATTTTTTCCTTTCTAGTACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCGTGTATTTTCAAAAAAATCATTTTTTCCTTTCTAGTACTGGGG  500

seq1  ATTAAAACTTTGGTCTCATACATGCTAAGCAAGTACTTTACTATTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTTTGGTCTCATACATGCTAAGCAAGTACTTTACTATTGAGCT  550

seq1  GAAACTCCACCCAAACTACTTTACTTAGGAAAATATGTGTCAAACCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCACCCAAACTACTTTACTTAGGAAAATATGTGTCAAACCCATT  600

seq1  TTTAGCTGCCAGCTCCCTGGAATCCTTGTTAAAGGCGACAGCACAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCCAGCTCCCTGGAATCCTTGTTAAAGGCGACAGCACAAAATG  650

seq1  AATCCTGACTAAAGCAGACTTTTTTTTTTATAGCTAGACAAAAATTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGACTAAAGCAGACTTTTTTTTTTATAGCTAGACAAAAATTGGCT  700

seq1  ATCATCTCTGACATGGTGCGTGCGTGCATGTGTGTGTGTGTG  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTGACATGGTGCGTGCGTGCATGTGTGTGTGTGTG  742