BAC Information

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BAC

Clone NameB6Ng01-014O03
Chromosome5 (Build37)
Map Location 24,892,686 - 25,030,361
singlet/doubletdoublet
Overlap geneMll3, Gm443
Upstream geneAtg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneXrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014O03.bB6Ng01-014O03.g
ACCDH849300DH849301
length1,151837
definitionDH849300|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O03, 5' end.DH849301|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,892,686 - 24,893,866)(25,029,525 - 25,030,361)
sequence
gaattcaaagactttctctaaacactgttttgcaccaaaactgggtactt
gctctgcaaaatagtctctcttgatacttagcaacttatttctgattctc
agatactaagaatttaaaaaatatgaaaattaatggactctttttgaaat
ttatgaatcaaacccaagtaaacaagcaagatgtatctccaaggcctcca
gtggttactcagtttaacaaactctaccatgttttacctttaagcacttc
cactacatgaataagctggaggccattcctctcacacctcttctcaagag
acaataaatacacatacgaattatcaagtaaatgttaactgatcttctta
gattttagcaaagtatgaaagcaaacagtttgatttactttgtgattctg
attctgactgttcttctgaaataacctgtaaattagactttccagagcaa
ctttaggctttacttttgcctagttaaaaaatgctgtgtttgcaaccatt
tatgtatcactaaagatgcactctcaaaatgctacactaactatatactt
gcggtgagagaattacaggagagtggagaaatggccaagggatgaaatac
aatagatgagaaagtatagctccagatgcttaatttccacaccatgcttt
gtttgaactatacggaatagaatctacttagaagatgaacatcaagattg
tagcaagacagtagtcagtagaaattgaccatcctagatttggaggctca
atgtttataacttatttctacagttactgcttcattatcctattaattcc
tctcaataaaaattttttttctagtctttattttaaatatcatttattaa
taaagtgttagcacagtgagttttgtttagatatgcttcaaaataataga
aagttagtaatgctagtagacatacatggtgaaattagtgtgactatagc
ttacagtataagaaccttcattatagctcataacttttatacgtacagca
gtctcactgagactcacacataccctgagtgatgagaactacttgcagtt
ctgcacactttgcactcaggaacactgcaccagcacgcttatgattacag
caatcagcacattcccatgtatgcgtgacacagtgtcaagaactgatcta
a
gaattcttttctgtatcaaagccacaaatcccagtttggcctgagtcgtg
atccctgagagattaaggggcctcttcaggctgttgagagtgaccgtggg
gagctgagtttctgtcccctcctttctaaggattctaacgagagaatggg
gatgggggctgctgagcctgtagaatagttctgcttcctgctgtgggaga
taactattttcagagtccatgtgactgtataattcacctaaaggactctg
tcaccctgctcagtcaacaggctgacaatctacttccagtcactcagtca
tcctggcaaacagaagcatgggaacctatttttctagccatcctccatct
gagtttttattctttcctccctccctccttccttctttcttttccttttt
ctttctttttttattttcttgctacttttttttaaactacttttaaattt
tattttatttattattatatgtaagtacattgtagctgacagaccagaag
agggtgtcatatctcactacggatggttgtgaaccatcatgtggttgctg
ggatttgaactcaggacctttggaagagcagtcagtgctcttacccgctg
agccatctctccagccccttcttgctacttttaaaagaaagatttacaaa
caaacaaaaaatgcaaggcagtaatggtgcacacatttaatctggagcac
tctggaggcagaggcggtggatctcttgagtttcaggccacactgttcta
cagagtgagttccaggacagccagggatatacagagcagccctgtctcaa
atatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24892686_24893866
seq2: B6Ng01-014O03.b_49_1199

seq1  GAATTCAAAGACTTTCTCTAAACACTGTTTTGCACCAAAACTGGGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACTTTCTCTAAACACTGTTTTGCACCAAAACTGGGTACTT  50

seq1  GCTCTGCAAAATAGTCTCTCTTGATACTTAGCAACTTATTTCTGATTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAAAATAGTCTCTCTTGATACTTAGCAACTTATTTCTGATTCTC  100

seq1  AGATACTAAGAATTTAAAAAATATGAAAATTAATGGACTCTTTTTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAAGAATTTAAAAAATATGAAAATTAATGGACTCTTTTTGAAAT  150

seq1  TTATGAATCAAACCCAAGTAAACAAGCAAGATGTATCTCCAAGGCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATCAAACCCAAGTAAACAAGCAAGATGTATCTCCAAGGCCTCCA  200

seq1  GTGGTTACTCAGTTTAACAAACTCTACCATGTTTTACCTTTAAGCACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTACTCAGTTTAACAAACTCTACCATGTTTTACCTTTAAGCACTTC  250

seq1  CACTACATGAATAAGCTGGAGGCCATTCCTCTCACACCTCTTCTCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATGAATAAGCTGGAGGCCATTCCTCTCACACCTCTTCTCAAGAG  300

seq1  ACAATAAATACACATACGAATTATCAAGTAAATGTTAACTGATCTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATACACATACGAATTATCAAGTAAATGTTAACTGATCTTCTTA  350

seq1  GATTTTAGCAAAGTATGAAAGCAAACAGTTTGATTTACTTTGTGATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGCAAAGTATGAAAGCAAACAGTTTGATTTACTTTGTGATTCTG  400

seq1  ATTCTGACTGTTCTTCTGAAATAACCTGTAAATTAGACTTTCCAGAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACTGTTCTTCTGAAATAACCTGTAAATTAGACTTTCCAGAGCAA  450

seq1  CTTTAGGCTTTACTTTTGCCTAGTTAAAAAATGCTGTGTTTGCAACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCTTTACTTTTGCCTAGTTAAAAAATGCTGTGTTTGCAACCATT  500

seq1  TATGTATCACTAAAGATGCACTCTCAAAATGCTACACTAACTATATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCACTAAAGATGCACTCTCAAAATGCTACACTAACTATATACTT  550

seq1  GCGGTGAGAGAATTACAGGAGAGTGGAGAAATGGCCAAGGGATGAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGAGAGAATTACAGGAGAGTGGAGAAATGGCCAAGGGATGAAATAC  600

seq1  AATAGATGAGAAAGTATAGCTCCAGATGCTTAATTTCCACACCATGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGAGAAAGTATAGCTCCAGATGCTTAATTTCCACACCATGCTTT  650

seq1  GTTTGAACTATACGGAATAGAATCTACTTAGAAGATGAACATCAAGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACTATACGGAATAGAATCTACTTAGAAGATGAACATCAAGATTG  700

seq1  TAGCAAGACAGTAGTCAGTAGAAATTGACCATCCTAGATTTGGAGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGACAGTAGTCAGTAGAAATTGACCATCCTAGATTTGGAGGCTCA  750

seq1  ATGTTTATAACTTATTTCTACAGTTACTGCTTCATTATCCTATTAATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATAACTTATTTCTACAGTTACTGCTTCATTATCCTATTAATTCC  800

seq1  TCTCAATAAAAA-TTTTTTTCTAGTCTTTATTTTAAAATATCATTTATTA  849
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TCTCAATAAAAATTTTTTTTCTAGTCTTTATTTT-AAATATCATTTATTA  849

seq1  ATAAAGTGTTAGCACAGTGAGTTTTGTTTAGATATGCTTCAAAATAATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGTTAGCACAGTGAGTTTTGTTTAGATATGCTTCAAAATAATAG  899

seq1  AAAAGTTAGTAAATGCTAGTAGACATACATGGTGAAATTAGTGTGACTAT  949
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -AAAGTTAGT-AATGCTAGTAGACATACATGGTGAAATTAGTGTGACTAT  947

seq1  AGCTTACAGTATAAAGAACCTTCATTATAGCTCATAAACTTTTAATACGT  999
      |||||||||||| |||||||||||||||||||||| ||||||| ||||||
seq2  AGCTTACAGTAT-AAGAACCTTCATTATAGCTCAT-AACTTTT-ATACGT  994

seq1  AACAGCAGGTCTCACTGAGACTCAACACATACCCTTGAGTTGGAATGAGA  1049
       |||||| ||||||||||||||| |||||||||| |||||    ||||||
seq2  -ACAGCA-GTCTCACTGAGACTC-ACACATACCC-TGAGT---GATGAGA  1037

seq1  AACTTACTTGCAGTTCTGGCACACTTTGCACTCAGG-ACACTGCCAACCA  1098
      |   ||||||||||||| |||||||||||||||||| |||||||  ||||
seq2  A--CTACTTGCAGTTCT-GCACACTTTGCACTCAGGAACACTGC--ACCA  1082

seq1  GCACGCTTTAGTGGAGTAACAGCTATATCCAGGCACA-TCCCATGGTAGT  1147
      ||||||||  |     | ||||| ||   || ||||| |||||| ||| |
seq2  GCACGCTTATG----ATTACAGCAAT---CA-GCACATTCCCAT-GTA-T  1122

seq1  GC-TGACCACAAGTGGTACAAAAGAACTGATCTAA  1181
      || ||| ||| ||||      ||||||||||||||
seq2  GCGTGA-CAC-AGTG----TCAAGAACTGATCTAA  1151

seq1: chr5_25029525_25030361
seq2: B6Ng01-014O03.g_68_904 (reverse)

seq1  CATACATACACACACACACACACACACACACACATATTTGAGACAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACACACACACACACACACACACACATATTTGAGACAGGGCT  50

seq1  GCTCTGTATATCCCTGGCTGTCCTGGAACTCACTCTGTAGAACAGTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTATATCCCTGGCTGTCCTGGAACTCACTCTGTAGAACAGTGTGG  100

seq1  CCTGAAACTCAAGAGATCCACCGCCTCTGCCTCCAGAGTGCTCCAGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCAAGAGATCCACCGCCTCTGCCTCCAGAGTGCTCCAGATTA  150

seq1  AATGTGTGCACCATTACTGCCTTGCATTTTTTGTTTGTTTGTAAATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGCACCATTACTGCCTTGCATTTTTTGTTTGTTTGTAAATCTTT  200

seq1  CTTTTAAAAGTAGCAAGAAGGGGCTGGAGAGATGGCTCAGCGGGTAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAGTAGCAAGAAGGGGCTGGAGAGATGGCTCAGCGGGTAAGAG  250

seq1  CACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATG  300

seq1  ATGGTTCACAACCATCCGTAGTGAGATATGACACCCTCTTCTGGTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCACAACCATCCGTAGTGAGATATGACACCCTCTTCTGGTCTGTC  350

seq1  AGCTACAATGTACTTACATATAATAATAAATAAAATAAAATTTAAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAATGTACTTACATATAATAATAAATAAAATAAAATTTAAAAGTA  400

seq1  GTTTAAAAAAAAGTAGCAAGAAAATAAAAAAAGAAAGAAAAAGGAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAAAAGTAGCAAGAAAATAAAAAAAGAAAGAAAAAGGAAAAGA  450

seq1  AAGAAGGAAGGAGGGAGGGAGGAAAGAATAAAAACTCAGATGGAGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAGGAGGGAGGGAGGAAAGAATAAAAACTCAGATGGAGGATGG  500

seq1  CTAGAAAAATAGGTTCCCATGCTTCTGTTTGCCAGGATGACTGAGTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAATAGGTTCCCATGCTTCTGTTTGCCAGGATGACTGAGTGACT  550

seq1  GGAAGTAGATTGTCAGCCTGTTGACTGAGCAGGGTGACAGAGTCCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGATTGTCAGCCTGTTGACTGAGCAGGGTGACAGAGTCCTTTAG  600

seq1  GTGAATTATACAGTCACATGGACTCTGAAAATAGTTATCTCCCACAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTATACAGTCACATGGACTCTGAAAATAGTTATCTCCCACAGCAG  650

seq1  GAAGCAGAACTATTCTACAGGCTCAGCAGCCCCCATCCCCATTCTCTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAACTATTCTACAGGCTCAGCAGCCCCCATCCCCATTCTCTCGT  700

seq1  TAGAATCCTTAGAAAGGAGGGGACAGAAACTCAGCTCCCCACGGTCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCTTAGAAAGGAGGGGACAGAAACTCAGCTCCCCACGGTCACTC  750

seq1  TCAACAGCCTGAAGAGGCCCCTTAATCTCTCAGGGATCACGACTCAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCCTGAAGAGGCCCCTTAATCTCTCAGGGATCACGACTCAGGCC  800

seq1  AAACTGGGATTTGTGGCTTTGATACAGAAAAGAATTC  837
      |||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGATTTGTGGCTTTGATACAGAAAAGAATTC  837