BAC Information

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BAC

Clone NameB6Ng01-015E13
Chromosome5 (Build37)
Map Location 12,285,346 - 12,426,462
singlet/doubletdoublet
Overlap geneEG668059, Sema3d
Upstream geneSpeer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015E13.bB6Ng01-015E13.g
ACCDH849587DH849588
length9691,024
definitionDH849587|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E13, 5' end.DH849588|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,285,346 - 12,286,210)(12,425,441 - 12,426,462)
sequence
gaattccaatacacaagtgacactaatcttaaatagctcttttttacccg
agtctttacatttattcttttattttatgtatatggtgttcgagtgtgca
tgtgtgcatgggatcatgtagccctggtccctctcaggttagaagagggc
atctgataccctgaaactgaatgtatgtgtggttgcgaactgtgtgtgga
tactaggaactgaatcccaatagttggcaagagcaacaaatggtttaaac
tgctaagtcatcaccccatcccttgtgaattctttttgttgttgttactc
tgtcaatttcttaaacagttcatccaataaaagttctaagaatattttaa
gtaaccaatatttgaaatgtttataatgggcaaacaaagaaaatggaaat
aatttgcactgcttcacaatctctgggattcctactgactaaaaactcct
aagcaaacaccgtcctataccttggttttggttttcagtttgatataaca
gtgactggttggaggtgaacataacccttgtgcagggtaactccttttag
ggtctttatattcatttgcattttgggagcttacaaaacaggagtcgtct
atgtaatgtaatgtttcagatagccttcgttttgcttatttctccccaaa
ccttcctctgcctgccttccacacttcaatcttccttactcctttccatg
ttatacaaccagtgatctactatctctttttctttctctcccccagtgga
cctttctagttcttttccttctatttgtactctcaattaaacacacagaa
tttaaaagatttaaaggtagaattcacataagacaaaaacatgtactttt
ggtctttgtaggttgggttacattaaaaaacactttattccagttacatc
tgtttacctgataattttatatttatacatggataaaattctgtcttata
agtcttttatacagattta
gaattccttaggatttagtcggtctattataaggtgattattttagaatt
catgctatggaattattataaactatgtcctgaacaaaaatataactgaa
ttacttatgagaatatgtcatatactttgggatacagaaagcgaaacatg
ttgcttatgagacataagttctatatgggcttcataataaatttggcaag
aaaaaagttataaatgaaaaaactgtcatagaaagagatagtttaaatga
caaaagtactggtagttctaaatttattcaaaaattatgcatacatttat
acatatatatatatattacattagaaatatatatatatatatatacaccg
tctcttttagatatttaaatacaacataaaaacaaaattcaccatccata
tttctcccgtaaatatagatatagaggtcacacagtaagcaaagcacata
tcaaaattgtagtaagagctatatgtaaaattgtgcaaagatgcaagaga
atgtttccacttaaattttagagaaagtattaagacattaaatggggata
aaaatgtggagaagtttgttacttagcagatgaacagtgttaactatgga
ggagccaaaagtaaagggcagattgctaacaggctacaatgattggacta
acactattgatacagaattcagatatatgcttctcatgggggaacagtca
ggagatagctgtaagactaaaatttgaaatctgaagatgctcaatctgtt
aactggatatcctcctgaaggtattgacagacagctgagtttaaagctga
agaagtgggcagcagccatagtagatgtataagtttggtagtgatcaacc
ctaaagaagcattagtacaggtcgagtgaggttgccaggactcggagccc
agtagtggaaagaataataacaggactgatcctttgatgcaattcattat
tgagagtccaaaagcagaggtaaaaccaatagtgggaaactccaaaacag
cttccgcggagggaggaaggtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12285346_12286210
seq2: B6Ng01-015E13.b_45_910

seq1  GAATTCCAATACACAAGTGACACTAATCTTAAATAGCTCTTTTTTACCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATACACAAGTGACACTAATCTTAAATAGCTCTTTTTTACCCG  50

seq1  AGTCTTTACATTTATTCTTTTATTTTATGTATATGGTGTTCGAGTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTACATTTATTCTTTTATTTTATGTATATGGTGTTCGAGTGTGCA  100

seq1  TGTGTGCATGGGATCATGTAGCCCTGGTCCCTCTCAGGTTAGAAGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGGGATCATGTAGCCCTGGTCCCTCTCAGGTTAGAAGAGGGC  150

seq1  ATCTGATACCCTGAAACTGAATGTATGTGTGGTTGCGAACTGTGTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATACCCTGAAACTGAATGTATGTGTGGTTGCGAACTGTGTGTGGA  200

seq1  TACTAGGAACTGAATCCCAATAGTTGGCAAGAGCAACAAATGGTTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGAACTGAATCCCAATAGTTGGCAAGAGCAACAAATGGTTTAAAC  250

seq1  TGCTAAGTCATCACCCCATCCCTTGTGAATTCTTTTTGTTGTTGTTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTCATCACCCCATCCCTTGTGAATTCTTTTTGTTGTTGTTACTC  300

seq1  TGTCAATTTCTTAAACAGTTCATCCAATAAAAGTTCTAAGAATATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTCTTAAACAGTTCATCCAATAAAAGTTCTAAGAATATTTTAA  350

seq1  GTAACCAATATTTGAAATGTTTATAATGGGCAAACAAAGAAAATGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAATATTTGAAATGTTTATAATGGGCAAACAAAGAAAATGGAAAT  400

seq1  AATTTGCACTGCTTCACAATCTCTGGGATTCCTACTGACTAAAAACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCACTGCTTCACAATCTCTGGGATTCCTACTGACTAAAAACTCCT  450

seq1  AAGCAAACACCGTCCTATACCTTGGTTTTGGTTTTCAGTTTGATATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACACCGTCCTATACCTTGGTTTTGGTTTTCAGTTTGATATAACA  500

seq1  GTGACTGGTTGGAGGTGAACATAACCCTTGTGCAGGGTAACTCCTTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGTTGGAGGTGAACATAACCCTTGTGCAGGGTAACTCCTTTTAG  550

seq1  GGTCTTTATATTCATTTGCATTTTGGGAGCTTACAAAACAGGAGTCGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTATATTCATTTGCATTTTGGGAGCTTACAAAACAGGAGTCGTCT  600

seq1  ATGTAATGTAATGTTTCAGATAGCCTTCGTTTTGCTTATTTCTCCCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGTAATGTTTCAGATAGCCTTCGTTTTGCTTATTTCTCCCCAAA  650

seq1  CCTTCCTCTGCCTGCCTTCCACACTTCAATCTTCCTTACTCCTTTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTGCCTGCCTTCCACACTTCAATCTTCCTTACTCCTTTCCATG  700

seq1  TTATACAACCAGTGATCTACTATCTC-TTTTCTTTCTCTCCCCCAGTGGA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATACAACCAGTGATCTACTATCTCTTTTTCTTTCTCTCCCCCAGTGGA  750

seq1  CCTTTCTAGTTCTTTTCCTTCTATTTGTACTCTCAATTAAACACACAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTAGTTCTTTTCCTTCTATTTGTACTCTCAATTAAACACACAGAA  800

seq1  TTTAAAAGATTTAAAGGTAGAATTCACATAAGACAAAAACATGTACTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATTTAAAGGTAGAATTCACATAAGACAAAAACATGTACTTTT  850

seq1  GGTCTTTGTAGGTTGG  865
      ||||||||||||||||
seq2  GGTCTTTGTAGGTTGG  866

seq1: chr5_12425441_12426462
seq2: B6Ng01-015E13.g_67_1090 (reverse)

seq1  GTCACC-TCCTCCCTCACCGGAAGCTGTTTT-GAGTTT-CCACTATTGGT  47
      |||||| |||||||||  ||||||||||||| |||||| |||||||||||
seq2  GTCACCTTCCTCCCTCCGCGGAAGCTGTTTTGGAGTTTCCCACTATTGGT  50

seq1  TTTA-CTCTGCTTTTTGGACTCTGCATAATGAATTGCATC-AAGGATCAG  95
      |||| |||||| |||||||||||  ||||||||||||||| |||||||||
seq2  TTTACCTCTGC-TTTTGGACTCTCAATAATGAATTGCATCAAAGGATCAG  99

seq1  TTCTTGTTATTATTCCTTCCACTACTGGGCTCCGAGTCCTGGCAACCTCA  145
       || ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -TCCTGTTATTATTCTTTCCACTACTGGGCTCCGAGTCCTGGCAACCTCA  148

seq1  CCTGACCTGTACTAATGCTTCTTTAGGGTTGATCACTACCAAACTTATAC  195
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCTGTACTAATGCTTCTTTAGGGTTGATCACTACCAAACTTATAC  198

seq1  ATCTACTATGGCTGCTGCCCACTTCTTCAGCTTTAAACTCAGCTGTCTTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCTACTATGGCTGCTGCCCACTTCTTCAGCTTTAAACTCAGCTGTC-TG  247

seq1  TCAATACCTTCAGGAGGATATCCAGTTAACAGATTGAGCATCTTCAGATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCTTCAGGAGGATATCCAGTTAACAGATTGAGCATCTTCAGATT  297

seq1  TCAAATTTTAGTCTTACAGCTATCTCCTGACTGTTCCCCCATGAGAAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTAGTCTTACAGCTATCTCCTGACTGTTCCCCCATGAGAAGCA  347

seq1  TATATCTGAATTCTGTATCAATAGTGTTAGTCCAATCATTGTAGCCTGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGAATTCTGTATCAATAGTGTTAGTCCAATCATTGTAGCCTGTT  397

seq1  AGCAATCTGCCCTTTACTTTTGGCTCCTCCATAGTTAACACTGTTCATCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTGCCCTTTACTTTTGGCTCCTCCATAGTTAACACTGTTCATCT  447

seq1  GCTAAGTAACAAACTTCTCCACATTTTTATCCCCATTTAATGTCTTAATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTAACAAACTTCTCCACATTTTTATCCCCATTTAATGTCTTAATA  497

seq1  CTTTCTCTAAAATTTAAGTGGAAACATTCTCTTGCATCTTTGCACAATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAAAATTTAAGTGGAAACATTCTCTTGCATCTTTGCACAATTT  547

seq1  TACATATAGCTCTTACTACAATTTTGATATGTGCTTTGCTTACTGTGTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAGCTCTTACTACAATTTTGATATGTGCTTTGCTTACTGTGTGA  597

seq1  CCTCTATATCTATATTTACGGGAGAAATATGGATGGTGAATTTTGTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATATCTATATTTACGGGAGAAATATGGATGGTGAATTTTGTTTTT  647

seq1  ATGTTGTATTTAAATATCTAAAAGAGACGGTGTATATATATATATATATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTATTTAAATATCTAAAAGAGACGGTGTATATATATATATATATA  697

seq1  TTTCTAATGTAATATATATATATATGTATAAATGTATGCATAATTTTTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGTAATATATATATATATGTATAAATGTATGCATAATTTTTGA  747

seq1  ATAAATTTAGAACTACCAGTACTTTTGTCATTTAAACTATCTCTTTCTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTAGAACTACCAGTACTTTTGTCATTTAAACTATCTCTTTCTAT  797

seq1  GACAGTTTTTTCATTTATAACTTTTTTCTTGCCAAATTTATTATGAAGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTTTTCATTTATAACTTTTTTCTTGCCAAATTTATTATGAAGCC  847

seq1  CATATAGAACTTATGTCTCATAAGCAACATGTTTCGCTTTCTGTATCCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAACTTATGTCTCATAAGCAACATGTTTCGCTTTCTGTATCCCA  897

seq1  AAGTATATGACATATTCTCATAAGTAATTCAGTTATATTTTTGTTCAGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATGACATATTCTCATAAGTAATTCAGTTATATTTTTGTTCAGGA  947

seq1  CATAGTTTATAATAATTCCATAGCATGAATTCTAAAATAATCACCTTATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTATAATAATTCCATAGCATGAATTCTAAAATAATCACCTTATA  997

seq1  ATAGACCGACTAAATCCTAAGGAATTC  1022
      |||||||||||||||||||||||||||
seq2  ATAGACCGACTAAATCCTAAGGAATTC  1024