BAC Information

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BAC

Clone NameB6Ng01-015F07
Chromosome5 (Build37)
Map Location 80,566,700 - 80,670,351
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015F07.bB6Ng01-015F07.g
ACCDH849622DH849623
length6401,114
definitionDH849622|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F07, 5' end.DH849623|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,566,700 - 80,567,339)(80,669,229 - 80,670,351)
sequence
gaattcaccattttcaccttgtaacaaattcagcaatgctgcaaaattac
caggcaacccaatttcttagggttacagcaatgtcacagataattaaata
gaaactggggttttgtcctggtttcaataaattggccagctggaccacca
gcaacatccctctgtgcagccgcaaaggtctagcagcatgctaataaaag
cctcagggagatcgcacacactattggccattttctacaagagctatggt
tttgggcaaattggggatatgtattagcattcttgttccattgcattgag
cacaagaagacaaggcgtaccttatgagggtgtgttaagtagccctgaaa
gtattgaaaactaatgagacaaacagaaaaaaaaaatataattcttattc
aacctcattctatagaacagcaaatctgacaatggcatcagttgtttgta
atgcttcaaagaaaaaccatatttccacttcaattaaaataaaagataat
tctgtgctgctttgatattcatagtcaagaatattttcccaaccatattt
ttatgaaactaactttttaatacctggagtttttgctttaactttacaat
tgctgagaaatagtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattccaggttcggttatttttattaggtagataagaatggaaaatgac
cctgtctatgacaaaattattctacatgatgaaaaaggtctttttcccat
atatcatgagaattttttctttttaatctaaatcatggaaatagaaacaa
ttttgtaattttaaaataacatatgttatcatggtttgaccaaaattatg
ttgatatttacctaaatcttttcctaaggtgaataatcagctgaatattg
aagggggcatactctcgatagccttctatgctgtctaagcattttgatct
ctgcacatagtaccaggtttggtctttctgtttactcaaatttttctgtt
ttactatgggtgcccactaaattctcacagagctcaatctccttggatac
caattggaaattctattcacatgaatttataaggcttatctcattggttt
ctcttttttagaggatgataaagtgtctgaaacatgactgacttcttaat
cattgcttcctgtaattaatccgttgaagtattttggtcattaaagtgag
ccaggcttctcttcttaccttgaacaaagtagaattcatactcaaagatt
ttgatttttattaaaactttgaacttatcagtttatactattaggaactg
acatttttcttagcttatcaatattcaactgttttcccttctaatacatt
tatggacaatgcatttaatttggctagaaatgatggctcagctcttaaca
ggaactttttcacatatattataatcattattaattattattgatgttgt
cataatggcataccatccatctcattaatacctatcagaaaactcggtat
cataattgacacctcctatctttcatcaagctaactcatttgttacctaa
gttagtcatttctgtctgtacttcttcagatatattcactcatctcacgt
tccaagaaaatctgccaccacatatacttttgattaaacagtatttatcc
ttttctcatcctagggaagccttaagcttccattgtatcaggctttatca
gtactatgattttagaaatagagtgattgtgatgttataccctcaccttg
atttggtttagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80566700_80567339
seq2: B6Ng01-015F07.b_47_686

seq1  GAATTCACCATTTTCACCTTGTAACAAATTCAGCAATGCTGCAAAATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTTCACCTTGTAACAAATTCAGCAATGCTGCAAAATTAC  50

seq1  CAGGCAACCCAATTTCTTAGGGTTACAGCAATGTCACAGATAATTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACCCAATTTCTTAGGGTTACAGCAATGTCACAGATAATTAAATA  100

seq1  GAAACTGGGGTTTTGTCCTGGTTTCAATAAATTGGCCAGCTGGACCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGGGTTTTGTCCTGGTTTCAATAAATTGGCCAGCTGGACCACCA  150

seq1  GCAACATCCCTCTGTGCAGCCGCAAAGGTCTAGCAGCATGCTAATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCCCTCTGTGCAGCCGCAAAGGTCTAGCAGCATGCTAATAAAAG  200

seq1  CCTCAGGGAGATCGCACACACTATTGGCCATTTTCTACAAGAGCTATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGAGATCGCACACACTATTGGCCATTTTCTACAAGAGCTATGGT  250

seq1  TTTGGGCAAATTGGGGATATGTATTAGCATTCTTGTTCCATTGCATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCAAATTGGGGATATGTATTAGCATTCTTGTTCCATTGCATTGAG  300

seq1  CACAAGAAGACAAGGCGTACCTTATGAGGGTGTGTTAAGTAGCCCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGACAAGGCGTACCTTATGAGGGTGTGTTAAGTAGCCCTGAAA  350

seq1  GTATTGAAAACTAATGAGACAAACAGAAAAAAAAAATATAATTCTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAAACTAATGAGACAAACAGAAAAAAAAAATATAATTCTTATTC  400

seq1  AACCTCATTCTATAGAACAGCAAATCTGACAATGGCATCAGTTGTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATTCTATAGAACAGCAAATCTGACAATGGCATCAGTTGTTTGTA  450

seq1  ATGCTTCAAAGAAAAACCATATTTCCACTTCAATTAAAATAAAAGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAAAGAAAAACCATATTTCCACTTCAATTAAAATAAAAGATAAT  500

seq1  TCTGTGCTGCTTTGATATTCATAGTCAAGAATATTTTCCCAACCATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGCTTTGATATTCATAGTCAAGAATATTTTCCCAACCATATTT  550

seq1  TTATGAAACTAACTTTTTAATACCTGGAGTTTTTGCTTTAACTTTACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAACTAACTTTTTAATACCTGGAGTTTTTGCTTTAACTTTACAAT  600

seq1  TGCTGAGAAATAGTGTGTGTGTGTGTGTGTGTGTGTGTGT  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAAATAGTGTGTGTGTGTGTGTGTGTGTGTGTGT  640

seq1: chr5_80669229_80670351
seq2: B6Ng01-015F07.g_67_1180 (reverse)

seq1  CAGCTAAACCAAATTAAAGTAAGGTGTTAACATCACAATCATCCTA-TTC  49
      |||||||||||||| || || |||   ||||||||||||||  ||| |||
seq2  CAGCTAAACCAAATCAAGGTGAGGGTATAACATCACAATCACTCTATTTC  50

seq1  TAAAACTATAGTACTGATTAAAGCCTGAATAACCATTGATAGCTTAAAGC  99
      |||||  |||||||||| ||||||||| |||  || ||  ||||||| ||
seq2  TAAAATCATAGTACTGA-TAAAGCCTG-ATA--CAATGGAAGCTTAAGGC  96

seq1  TCTCATA-GATGAGAAAAGGATAATTAACTGTTTAAATCAAAAGTATATG  148
      |  | || |||||||||||||||| | ||||||| |||||||||||||||
seq2  TTCCCTAGGATGAGAAAAGGATAAAT-ACTGTTT-AATCAAAAGTATATG  144

seq1  TGGTGGCAGATTTTTCTTGGAACGTTGAGATGAGTGAATATATCTTGAAG  198
      |||||||||| ||||||||||||| ||||||||||||||||||| |||||
seq2  TGGTGGCAGA-TTTTCTTGGAACG-TGAGATGAGTGAATATATC-TGAAG  191

seq1  AAGTACATGACAGAAATTGACTAACTTAGGTAACAAATGAGTTAGCTTGA  248
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTACA-GACAGAAA-TGACTAACTTAGGTAACAAATGAGTTAGCTTGA  239

seq1  TGAAAGATAGGAGGTGTCAATTATGATACCGAGTTTTCTGATAGGTATTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAGGAGGTGTCAATTATGATACCGAGTTTTCTGATAGGTATTA  289

seq1  ATGAGATGGATGGTATGCCATTATGACAACATCAATAATAATTAATAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGATGGTATGCCATTATGACAACATCAATAATAATTAATAATG  339

seq1  ATTATAATATATGTGAAAAAGTTCCTGTTAAGAGCTGAGCCATCATTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATATATGTGAAAAAGTTCCTGTTAAGAGCTGAGCCATCATTTCT  389

seq1  AGCCAAATTAAATGCATTGTCCATAAATGTATTAGAAGGGAAAACAGTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATTAAATGCATTGTCCATAAATGTATTAGAAGGGAAAACAGTTG  439

seq1  AATATTGATAAGCTAAGAAAAATGTCAGTTCCTAATAGTATAAACTGATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATAAGCTAAGAAAAATGTCAGTTCCTAATAGTATAAACTGATA  489

seq1  AGTTCAAAGTTTTAATAAAAATCAAAATCTTTGAGTATGAATTCTACTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAAGTTTTAATAAAAATCAAAATCTTTGAGTATGAATTCTACTTT  539

seq1  GTTCAAGGTAAGAAGAGAAGCCTGGCTCACTTTAATGACCAAAATACTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGTAAGAAGAGAAGCCTGGCTCACTTTAATGACCAAAATACTTC  589

seq1  AACGGATTAATTACAGGAAGCAATGATTAAGAAGTCAGTCATGTTTCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGATTAATTACAGGAAGCAATGATTAAGAAGTCAGTCATGTTTCAGA  639

seq1  CACTTTATCATCCTCTAAAAAAGAGAAACCAATGAGATAAGCCTTATAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATCATCCTCTAAAAAAGAGAAACCAATGAGATAAGCCTTATAAA  689

seq1  TTCATGTGAATAGAATTTCCAATTGGTATCCAAGGAGATTGAGCTCTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGAATAGAATTTCCAATTGGTATCCAAGGAGATTGAGCTCTGTG  739

seq1  AGAATTTAGTGGGCACCCATAGTAAAACAGAAAAATTTGAGTAAACAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAGTGGGCACCCATAGTAAAACAGAAAAATTTGAGTAAACAGAA  789

seq1  AGACCAAACCTGGTACTATGTGCAGAGATCAAAATGCTTAGACAGCATAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAACCTGGTACTATGTGCAGAGATCAAAATGCTTAGACAGCATAG  839

seq1  AAGGCTATCGAGAGTATGCCCCCTTCAATATTCAGCTGATTATTCACCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATCGAGAGTATGCCCCCTTCAATATTCAGCTGATTATTCACCTT  889

seq1  AGGAAAAGATTTAGGTAAATATCAACATAATTTTGGTCAAACCATGATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGATTTAGGTAAATATCAACATAATTTTGGTCAAACCATGATAA  939

seq1  CATATGTTATTTTAAAATTACAAAATTGTTTCTATTTCCATGATTTAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTATTTTAAAATTACAAAATTGTTTCTATTTCCATGATTTAGAT  989

seq1  TAAAAAGAAAAAATTCTCATGATATATGGGAAAAAGACCTTTTTCATCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAAAATTCTCATGATATATGGGAAAAAGACCTTTTTCATCAT  1039

seq1  GTAGAATAATTTTGTCATAGACAGGGTCATTTTCCATTCTTATCTACCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAATTTTGTCATAGACAGGGTCATTTTCCATTCTTATCTACCTA  1089

seq1  ATAAAAATAACCGAACCTGGAATTC  1123
      |||||||||||||||||||||||||
seq2  ATAAAAATAACCGAACCTGGAATTC  1114