BAC Information

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BAC

Clone NameB6Ng01-015J14
Chromosome5 (Build37)
Map Location 41,515,351 - 41,673,081
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J14.bB6Ng01-015J14.g
ACCDH849810DH849811
length1,1321,112
definitionDH849810|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J14, 5' end.DH849811|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,671,926 - 41,673,081)(41,515,351 - 41,516,474)
sequence
gaattccacagaatggagtctattcaaaatgaggaagcgattaacgtaat
tttagcttcctctgaagcttgcaaaagttggttaagtatatctattcaaa
acaacatacattcttttaaaaaaatcaaagtcaaatttaagtgttgttga
ctgttcaatatctcagctaggaatagatctcaaagtttttccttttgttg
ttaattttaatttcgacaaattctgccttggatagcttttccttcagcag
aacgtttgtgagtctcacagggcactctgagcatgcttttcttttctttc
tagttcttctttctttctttttttcttttctttagtattgcaaaagatac
tggctctgtgttgacgggaatactgcactgcaaatattaacagcaaatgc
atggcagagcacacggcttggtcatttcccactttcttctccttcatgtc
tctgccatttggaatcccacctaccttttaaagctctgctccaagacttt
gaggtggaaagagcctatactctgttgccaggggaaaaagtgtaatagtg
acgatcctggcctccaaactcagaagttcccctttctaactccttgaact
tggttgtgaaatttaaaagcgtcactcctcccttcaagtaggcacaaatt
cacagcacttcagagtggtgttgtgatgaggccatgtgtaacaattagtt
actgtgactacacccaatgtccatttccccccttttcatgtgccagtcct
gtaactatattttggagatcaaatgttggttgtgcatccgacgtgaggcc
aagctgaggttctatctctggaacttagtcttagtggaagaacatcagga
cagaggacttgttcccaccactgtccttctatacttacaacctttgtcca
ggaaagggctgtccttcgctattatgaatctagtatttttttttagttta
ctcttcagtttcataactcctccctgtattttctgtatatttttctagta
cattatttctgcttatataaagagctgcataatattagaatactagttct
cacttttgtttccctattacaaaacatgtcattcgtataaggtgctggta
catggtagaatataggaagagagttggggttt
gaattcctataggatgtgcagagcaagaaggccagtgcttagagagaaag
aacacagcagataccgtgctgagctgcaggtgagggacataacaaagggt
tgctctaaggacttgtgcatacaactttaccaattatctaattgtagata
attaggggatttttatcattggtgaaaaatacaggcttgacttaatcgta
aatgtaccaagaatacatcagcaaaagaagacaaaccattggcttcttag
gtaagatcctccaggaaagtgaacctaagagtggcatttgcatcataacc
ataggctgtccacctaaacaaaacactgattatgtataggaagatgatta
agccatacaaaaagagaaaagggctccatctatgtgtggaaggcaaagca
aggcatctgaaacagaagcatggagagagcaattgagtcacgtggaaaca
tggaggcaaacaaaagagtgaagctatcagttatttttcactctaaaatt
taagtgaagcaaatctgtagaattttacacacctgggacaaccacgtggt
ccttgacaattaaatgaatctggctttttttttttttttttttttttttt
gtaaaagtaaaacttaaaaaacaaacaaaaaataaaccaaaaaaactaaa
ggaccaaacaaaaaacctcaaggtgttgtggctgggacttttgcttagct
ggtagagtcttgtctggtgtgcacaaaccttgaatctgatccccgacatc
tcatgaagcaggcatggtatcccatgcctgtagatctcatccaaacttga
acacgtggcatgacatgatgagttgaaagccatactgagctacatgagac
cctgtctcaaaactcaaacaaaccttttttgtatctatgagctgtcatac
aacctaccaggttccaatctccttatttttctccttagcatcattgcact
tgataccttaatttctgaattcctctaatatgcgtacatttaagtcacca
tttaaagtagtaaatgatgtggggcaactcttcgattcttgttctaggtg
tatgtttgctcccacatatttaattatttttatagacggtctcatgaagc
agttatcaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41671926_41673081
seq2: B6Ng01-015J14.b_43_1174 (reverse)

seq1  AAACCCCAA-ACTCTCCATA---TCTACCATGTAACAGCACTTTATAACC  46
      |||||||||  |||| | ||   ||||||||||| |||||| |||||  |
seq2  AAACCCCAACTCTCTTCCTATATTCTACCATGTACCAGCACCTTATA--C  48

seq1  GAAATGACATGGTTTTGTTATAAGGGAAACAAAAGTGAAGAAACTAGTAT  96
      | |||||||| ||||||| || ||||||||||||||||   |||||||| 
seq2  G-AATGACAT-GTTTTGTAAT-AGGGAAACAAAAGTGA--GAACTAGTA-  92

seq1  TTCTAATATTTATTGGCAGCTCTTTTAATTATAAGCAGAAATATATGTAA  146
      |||||||| ||||  ||||||||||    |||||||||||||| |||| |
seq2  TTCTAATA-TTAT--GCAGCTCTTT---ATATAAGCAGAAATA-ATGT-A  134

seq1  CTTAAGAAAAATAATTACAGAAAATACAGGGAGGAGTTTATGAAACTGAA  196
      ||  |||||||||  ||||||||||||||||||||| |||||||||||||
seq2  CT--AGAAAAATA--TACAGAAAATACAGGGAGGAG-TTATGAAACTGAA  179

seq1  GAGTAAACCTAAAAAAAAAATACTAGATTTCATAAATAGCGAAGGACAAG  246
      ||||||||   |||||||||||||||| ||||| ||||||||||||||  
seq2  GAGTAAAC--TAAAAAAAAATACTAGA-TTCAT-AATAGCGAAGGACA--  223

seq1  GCCCTTTCCTGGAACAAAGGTTGTAAGTATAGAAGGACAGTGGTGGGAAC  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCCTGG-ACAAAGGTTGTAAGTATAGAAGGACAGTGGTGGGAAC  272

seq1  AAGTCCTCTGTCCTGATGTTCTTCCACTAAGACTAAGTTCCAGAGATAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCTGTCCTGATGTTCTTCCACTAAGACTAAGTTCCAGAGATAGA  322

seq1  ACCTCAGCTTGGCCTCACGTCGGATGCACAACCAACATTTGATCTCCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCTTGGCCTCACGTCGGATGCACAACCAACATTTGATCTCCAAA  372

seq1  ATATAGTTACAGGACTGGCACATGAAAAGGGGGGAAATGGACATTGGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTACAGGACTGGCACATGAAAAGGGGGGAAATGGACATTGGGTG  422

seq1  TAGTCACAGTAACTAATTGTTACACATGGCCTCATCACAACACCACTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGTAACTAATTGTTACACATGGCCTCATCACAACACCACTCTG  472

seq1  AAGTGCTGTGAATTTGTGCCTACTTGAAGGGAGGAGTGACGCTTTTAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGTGAATTTGTGCCTACTTGAAGGGAGGAGTGACGCTTTTAAAT  522

seq1  TTCACAACCAAGTTCAAGGAGTTAGAAAGGGGAACTTCTGAGTTTGGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACCAAGTTCAAGGAGTTAGAAAGGGGAACTTCTGAGTTTGGAGG  572

seq1  CCAGGATCGTCACTATTACACTTTTTCCCCTGGCAACAGAGTATAGGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCGTCACTATTACACTTTTTCCCCTGGCAACAGAGTATAGGCTC  622

seq1  TTTCCACCTCAAAGTCTTGGAGCAGAGCTTTAAAAGGTAGGTGGGATTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTCAAAGTCTTGGAGCAGAGCTTTAAAAGGTAGGTGGGATTCC  672

seq1  AAATGGCAGAGACATGAAGGAGAAGAAAGTGGGAAATGACCAAGCCGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAGAGACATGAAGGAGAAGAAAGTGGGAAATGACCAAGCCGTGT  722

seq1  GCTCTGCCATGCATTTGCTGTTAATATTTGCAGTGCAGTATTCCCGTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCATGCATTTGCTGTTAATATTTGCAGTGCAGTATTCCCGTCAA  772

seq1  CACAGAGCCAGTATCTTTTGCAATACTAAAGAAAAGAAAAAAAGAAAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCCAGTATCTTTTGCAATACTAAAGAAAAGAAAAAAAGAAAGAA  822

seq1  AGAAGAACTAGAAAGAAAAGAAAAGCATGCTCAGAGTGCCCTGTGAGACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACTAGAAAGAAAAGAAAAGCATGCTCAGAGTGCCCTGTGAGACT  872

seq1  CACAAACGTTCTGCTGAAGGAAAAGCTATCCAAGGCAGAATTTGTCGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACGTTCTGCTGAAGGAAAAGCTATCCAAGGCAGAATTTGTCGAAA  922

seq1  TTAAAATTAACAACAAAAGGAAAAACTTTGAGATCTATTCCTAGCTGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAACAACAAAAGGAAAAACTTTGAGATCTATTCCTAGCTGAGA  972

seq1  TATTGAACAGTCAACAACACTTAAATTTGACTTTGATTTTTTTAAAAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACAGTCAACAACACTTAAATTTGACTTTGATTTTTTTAAAAGAA  1022

seq1  TGTATGTTGTTTTGAATAGATATACTTAACCAACTTTTGCAAGCTTCAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTGTTTTGAATAGATATACTTAACCAACTTTTGCAAGCTTCAGA  1072

seq1  GGAAGCTAAAATTACGTTAATCGCTTCCTCATTTTGAATAGACTCCATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAAAATTACGTTAATCGCTTCCTCATTTTGAATAGACTCCATTC  1122

seq1  TGTGGAATTC  1156
      ||||||||||
seq2  TGTGGAATTC  1132

seq1: chr5_41515351_41516474
seq2: B6Ng01-015J14.g_65_1176

seq1  GAATTCCTATAGGATGTGCAGAGCAAGAAGGCCAGTGCTTAGAGAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAGGATGTGCAGAGCAAGAAGGCCAGTGCTTAGAGAGAAAG  50

seq1  AACACAGCAGATACCGTGCTGAGCTGCAGGTGAGGGACATAACAAAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCAGATACCGTGCTGAGCTGCAGGTGAGGGACATAACAAAGGGT  100

seq1  TGCTCTAAGGACTTGTGCATACAACTTTACCAATTATCTAATTGTAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGGACTTGTGCATACAACTTTACCAATTATCTAATTGTAGATA  150

seq1  ATTAGGGGATTTTTATCATTGGTGAAAAATACAGGCTTGACTTAATCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGATTTTTATCATTGGTGAAAAATACAGGCTTGACTTAATCGTA  200

seq1  AATGTACCAAGAATACATCAGCAAAAGAAGACAAACCATTGGCTTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCAAGAATACATCAGCAAAAGAAGACAAACCATTGGCTTCTTAG  250

seq1  GTAAGATCCTCCAGGAAAGTGAACCTAAGAGTGGCATTTGCATCATAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATCCTCCAGGAAAGTGAACCTAAGAGTGGCATTTGCATCATAACC  300

seq1  ATAGGCTGTCCACCTAAACAAAACACTGATTATGTATAGGAAGATGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGTCCACCTAAACAAAACACTGATTATGTATAGGAAGATGATTA  350

seq1  AGCCATACAAAAAGAGAAAAGGGCTCCATCTATGTGTGGAAGGCAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACAAAAAGAGAAAAGGGCTCCATCTATGTGTGGAAGGCAAAGCA  400

seq1  AGGCATCTGAAACAGAAGCATGGAGAGAGCAATTGAGTCACGTGGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTGAAACAGAAGCATGGAGAGAGCAATTGAGTCACGTGGAAACA  450

seq1  TGGAGGCAAACAAAAGAGTGAAGCTATCAGTTATTTTTCACTCTAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAAACAAAAGAGTGAAGCTATCAGTTATTTTTCACTCTAAAATT  500

seq1  TAAGTGAAGCAAATCTGTAGAATTTTACACACCTGGGACAACCACGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGCAAATCTGTAGAATTTTACACACCTGGGACAACCACGTGGT  550

seq1  CCTTGACAATTAAATGAATCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACAATTAAATGAATCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTT  600

seq1  GTAAAAGTAAAACTTAAAAAACAAACAAAAAATAAACCAAAAAAACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTAAAACTTAAAAAACAAACAAAAAATAAACCAAAAAAACTAAA  650

seq1  GGACCAAACAAAAAACCTCAAGGTGTTGTGGCTGGGACTTTTGCTTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAACAAAAAACCTCAAGGTGTTGTGGCTGGGACTTTTGCTTAGCT  700

seq1  GGTAGAGTCTTGTCTGGTGTGCACAAACCTTGAATCTGATCCCCGACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTCTTGTCTGGTGTGCACAAACCTTGAATCTGATCCCCGACATC  750

seq1  TCATGAAGCAGGCATGGTATCCCATGCCTGTAGATCTCATCCAAACTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCAGGCATGGTATCCCATGCCTGTAGATCTCATCCAAACTTGA  800

seq1  ACACGTGGCATGACATGATGAGTTGAAAGCCATACTGAGCTACATGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGGCATGACATGATGAGTTGAAAGCCATACTGAGCTACATGAGAC  850

seq1  CCTGTCTCAAAACTCAAACAAACC-TTTTTGTATCTATGAGCTGTCATAC  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGTCTCAAAACTCAAACAAACCTTTTTTGTATCTATGAGCTGTCATAC  900

seq1  AACCTACCAAGTTCCAATCTCCTTATTTTTCTCCTTTAGCATCATTGCAC  949
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  AACCTACCAGGTTCCAATCTCCTTATTTTTCTCC-TTAGCATCATTGCAC  949

seq1  TTGATACCTT-ATTTCTGAATTCCTTCTAATATGCGTTACATTTAAGTCA  998
      |||||||||| ||||||||||||| ||||||||||| |||||||||||||
seq2  TTGATACCTTAATTTCTGAATTCC-TCTAATATGCG-TACATTTAAGTCA  997

seq1  CCAATATTAAAGTTAGTAAATGATGTGGGGCAACTCTTCGAATTCTCTTG  1048
      |||   |||||| ||||||||||||||||||||||||||||    |||||
seq2  CCA--TTTAAAG-TAGTAAATGATGTGGGGCAACTCTTCGA---TTCTTG  1041

seq1  TTCTAGGTGTATGTTTGCTCCCACATATTTAAATTATTTTAATAGACGTA  1098
      |||||||||||||||||||||||||||||| ||||||||| |||||||  
seq2  TTCTAGGTGTATGTTTGCTCCCACATATTT-AATTATTTTTATAGACGGT  1090

seq1  CTCATGAAAAGCAAGTTATTCAAGTC  1124
      ||||||  |||| ||||| |||||||
seq2  CTCATG--AAGC-AGTTA-TCAAGTC  1112