BAC Information

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BAC

Clone NameB6Ng01-015J16
Chromosome5 (Build37)
Map Location 142,987,291 - 143,198,791
singlet/doubletdoublet
Overlap geneD930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik
Downstream geneTnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J16.bB6Ng01-015J16.g
ACCDH849814DH849815
length1,097773
definitionDH849814|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J16, 5' end.DH849815|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,987,291 - 142,988,389)(143,198,023 - 143,198,791)
sequence
gaattctaaacaaacatggcacctctgggaggcaggtacccaggagtcag
ttaaacataggtttttctttttagtttttggttttctgagacagggtctt
ccttccaggccagcctggaactcttagttctcctgccttagtctcctgaa
gactggtattacaggcctgtgcaccatgcctggttgcttttcttcactct
taaaagcttttcttcaagcagacatcatagaattctgactgctttgaagc
acctcgcttgcatgggactttctgatatgtcccctcctcaagataaggcc
acagagagcaagggcccaaaccactccgagggtcagggagaccagttttg
aggaccttccagtccctgaattcttagaaacagagcagtggtcacagcac
caatacatgaacgtcatcacctatatatcaactcaagtccacccctgacc
aatgacctcccatgtggcctctggactgaaggccagcagaggccagcagg
ctagcacctctcgtaagtcaatcctgaagctgtggaggacacagtccagc
atcatggctggacataccctgcagctgctgaggggctcagacctgatgtc
acatgacctaggaggagctcggggagttggcagtcaaatgggcatatgtc
tgagggtcatacgcagctgtcttggtcaaaaacaaggtcacttcaggtgc
cccctatactcaaccagggactttgccaatgtgaggggaactttagatga
agccccattcccacatccactttagacaagtcagctggcaagaggtggct
caaagcctttcagaacatggcagttttagatggaaaactattcactgcat
gtaaagatgtcaggccttgccatgtgagagtgaggatggaaaaggacagc
ccccctcttcccttccctgctgcaggatggtcccagccaaggctctcgtc
tcctggaggaacatcgcacttcccactctgctgtgctgggtccctgccat
cagaagctctggaattcagaagaatctcagcaaccccgtgattccgccac
tgccatgtcctgaccaagaacagctgtccctaagcctgaaatctgag
gaattcattactggctttgagcagcctgactcccagacccagagggggta
gagccaggaccagcacactccccgttttgagctcttcctcctgtgagcca
gatgtagaaatccatatcttttcctgtcctcacagaggcagcggttgcta
aggcccgtgcaagccccaggtgctcagcactaggcaatcatcagttctaa
aaacacctagctcaggacaggtgggaccacaagtgtctcagcattgtggg
gaagacaccccatcagggccccattttaatctccccaccctacccagtgg
ctcacttcccagccctccccccacaaacacttcctcaggacagcggtggg
cagtctctgccatatttaatggccagtgcggtagtcagagaacacacagg
tagacaggacacagcagggactggtacagggtggtcacggctggggccac
tgtgtggagaggcaagtgtcccggctcagcaaaagctctctttggcagga
ggtcctccagccgatcctggcacccacgagtccaatcctcaccttgcagc
cacttgccagggtttcaagtgtgtcgtgtcatcacttgactctcggtgga
tgggagtggggcggcctaggtcacgagtggacctcagctgtccctgcatg
atgggtagttggatggaaacaggaaagaaaatgggacgtccctgttagcc
gtggcccttagcctgtgctctaagagggggtgggtggtggtgcatgggga
agtcctccacctagggtgggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_142987291_142988389
seq2: B6Ng01-015J16.b_45_1141

seq1  GAATTCTAAACAAACATGGCACCTCTGGGAGGCAGGTACCCAGGAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACAAACATGGCACCTCTGGGAGGCAGGTACCCAGGAGTCAG  50

seq1  TTAAACATAGGTTTTTCTTTTTAGTTTTTGGTTTTCTGAGACAGGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATAGGTTTTTCTTTTTAGTTTTTGGTTTTCTGAGACAGGGTCTT  100

seq1  CCTTCCAGGCCAGCCTGGAACTCTTAGTTCTCCTGCCTTAGTCTCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGCCAGCCTGGAACTCTTAGTTCTCCTGCCTTAGTCTCCTGAA  150

seq1  GACTGGTATTACAGGCCTGTGCACCATGCCTGGTTGCTTTTCTTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTATTACAGGCCTGTGCACCATGCCTGGTTGCTTTTCTTCACTCT  200

seq1  TAAAAGCTTTTCTTCAAGCAGACATCATAGAATTCTGACTGCTTTGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTTTTCTTCAAGCAGACATCATAGAATTCTGACTGCTTTGAAGC  250

seq1  ACCTCGCTTGCATGGGACTTTCTGATATGTCCCCTCCTCAAGATAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGCTTGCATGGGACTTTCTGATATGTCCCCTCCTCAAGATAAGGCC  300

seq1  ACAGAGAGCAAGGGCCCAAACCACTCCGAGGGTCAGGGAGACCAGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCAAGGGCCCAAACCACTCCGAGGGTCAGGGAGACCAGTTTTG  350

seq1  AGGACCTTCCAGTCCCTGAATTCTTAGAAACAGAGCAGTGGTCACAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCCAGTCCCTGAATTCTTAGAAACAGAGCAGTGGTCACAGCAC  400

seq1  CAATACATGAACGTCATCACCTATATATCAACTCAAGTCCACCCCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATGAACGTCATCACCTATATATCAACTCAAGTCCACCCCTGACC  450

seq1  AATGACCTCCCATGTGGCCTCTGGACTGAAGGCCAGCAGAGGCCAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTCCCATGTGGCCTCTGGACTGAAGGCCAGCAGAGGCCAGCAGG  500

seq1  CTAGCACCTCTCGTAAGTCAATCCTGAAGCTGTGGAGGACACAGTCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCTCTCGTAAGTCAATCCTGAAGCTGTGGAGGACACAGTCCAGC  550

seq1  ATCATGGCTGGACATACCCTGCAGCTGCTGAGGGGCTCAGACCTGATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCTGGACATACCCTGCAGCTGCTGAGGGGCTCAGACCTGATGTC  600

seq1  ACATGACCTAGGAGGAGCTCGGGGAGTTGGCAGTCAAATGGGCATATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCTAGGAGGAGCTCGGGGAGTTGGCAGTCAAATGGGCATATGTC  650

seq1  TGAGGGTCATACGCAGCTGTCTTGGTCAAAAACAAGGTCACTTCAGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCATACGCAGCTGTCTTGGTCAAAAACAAGGTCACTTCAGGTGC  700

seq1  CCCCTATACTCAACCAGGGACTTTGCCAATGTGAGGGGAACCTTAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCTATACTCAACCAGGGACTTTGCCAATGTGAGGGGAACTTTAGATGA  750

seq1  AGCCCCATTTCCCACATCCACTTTAGACAAGTCAGCTGGCAAGAGGTGGC  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCA-TTCCCACATCCACTTTAGACAAGTCAGCTGGCAAGAGGTGGC  799

seq1  TCAAAGCCTTTCAGAACATGGCAGTTTTAGATGGAAAACTATTCACTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCTTTCAGAACATGGCAGTTTTAGATGGAAAACTATTCACTGCA  849

seq1  TGTAAAGATGTCAGGCCTTGCCATGTGAGAGTGAGGATGGAAAAGGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGATGTCAGGCCTTGCCATGTGAGAGTGAGGATGGAAAAGGACAG  899

seq1  -CCCCCTCTTCCCTTCCCCTGCTGCAGGGATGGTCCCAGCCAAGGCTCTC  949
       |||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  CCCCCCTCTTCCCTT-CCCTGCTGCA-GGATGGTCCCAGCCAAGGCTCTC  947

seq1  GTCTCCTGGAGGAACATCGCACCTCCCACTCTGCTGTGGCTGGGTCCCTT  999
      |||||||||||||||||||||| |||||||||||||| |||||||||| |
seq2  GTCTCCTGGAGGAACATCGCACTTCCCACTCTGCTGT-GCTGGGTCCC-T  995

seq1  GCAATCAGAAGCTCTG--ACTCAGAAG-ATCTCAGCAACACCCGTGTATC  1046
      || |||||||||||||  | ||||||| ||||||||||| ||||||  ||
seq2  GCCATCAGAAGCTCTGGAATTCAGAAGAATCTCAGCAAC-CCCGTGATTC  1044

seq1  AGCCACTGCCATGT-CTGACCAAAGACAGCTGTCCCCAAGCCTGACAATC  1095
       ||||||||||||| ||||||||  ||||||||||| |||||||| ||||
seq2  CGCCACTGCCATGTCCTGACCAAGAACAGCTGTCCCTAAGCCTGA-AATC  1093

seq1  TGAG  1099
      ||||
seq2  TGAG  1097

seq1: chr5_143198023_143198791
seq2: B6Ng01-015J16.g_67_839 (reverse)

seq1  GCACCCACCTTAGGTGGAGGACTTCCCCATGCA-CACCACC--ACCCCTC  47
      ||||||||| ||||||||||||||||||||||| |||||||   ||||||
seq2  GCACCCACCCTAGGTGGAGGACTTCCCCATGCACCACCACCCACCCCCTC  50

seq1  TTAGAGCACAGGCTAAGGGCCACGGCTAACAGGGACGTCCCA-TTTCTTT  96
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAGAGCACAGGCTAAGGGCCACGGCTAACAGGGACGTCCCATTTTCTTT  100

seq1  CCTG-TTCCATCCAACTTACCCATCATGCAGGGACAGCTGAGGTCCACTC  145
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCATCCAAC-TACCCATCATGCAGGGACAGCTGAGGTCCACTC  149

seq1  GTGACCTAGGCCGCCCCACTCCCATCCACCGAGAGTCAAGTGATGACACG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTAGGCCGCCCCACTCCCATCCACCGAGAGTCAAGTGATGACACG  199

seq1  ACACACTTGAAACCCTGGCAAGTGGCTGCAAGGTGAGGATTGGACTCGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTGAAACCCTGGCAAGTGGCTGCAAGGTGAGGATTGGACTCGTG  249

seq1  GGTGCCAGGATCGGCTGGAGGACCTCCTGCCAAAGAGAGCTTTTGCTGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGGATCGGCTGGAGGACCTCCTGCCAAAGAGAGCTTTTGCTGAG  299

seq1  CCGGGACACTTGCCTCTCCACACAGTGGCCCCAGCCGTGACCACCCTGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACACTTGCCTCTCCACACAGTGGCCCCAGCCGTGACCACCCTGTA  349

seq1  CCAGTCCCTGCTGTGTCCTGTCTACCTGTGTGTTCTCTGACTACCGCACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCTGCTGTGTCCTGTCTACCTGTGTGTTCTCTGACTACCGCACT  399

seq1  GGCCATTAAATATGGCAGAGACTGCCCACCGCTGTCCTGAGGAAGTGTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTAAATATGGCAGAGACTGCCCACCGCTGTCCTGAGGAAGTGTTT  449

seq1  GTGGGGGGAGGGCTGGGAAGTGAGCCACTGGGTAGGGTGGGGAGATTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGAGGGCTGGGAAGTGAGCCACTGGGTAGGGTGGGGAGATTAAA  499

seq1  ATGGGGCCCTGATGGGGTGTCTTCCCCACAATGCTGAGACACTTGTGGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCCTGATGGGGTGTCTTCCCCACAATGCTGAGACACTTGTGGTC  549

seq1  CCACCTGTCCTGAGCTAGGTGTTTTTAGAACTGATGATTGCCTAGTGCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTCCTGAGCTAGGTGTTTTTAGAACTGATGATTGCCTAGTGCTG  599

seq1  AGCACCTGGGGCTTGCACGGGCCTTAGCAACCGCTGCCTCTGTGAGGACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGGGGCTTGCACGGGCCTTAGCAACCGCTGCCTCTGTGAGGACA  649

seq1  GGAAAAGATATGGATTTCTACATCTGGCTCACAGGAGGAAGAGCTCAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGATATGGATTTCTACATCTGGCTCACAGGAGGAAGAGCTCAAAA  699

seq1  CGGGGAGTGTGCTGGTCCTGGCTCTACCCCCTCTGGGTCTGGGAGTCAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGTGTGCTGGTCCTGGCTCTACCCCCTCTGGGTCTGGGAGTCAGG  749

seq1  CTGCTCAAAGCCAGTAATGAATTC  769
      ||||||||||||||||||||||||
seq2  CTGCTCAAAGCCAGTAATGAATTC  773