BAC Information

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BAC

Clone NameB6Ng01-016A01
Chromosome5 (Build37)
Map Location 55,767,020 - 55,768,067
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A01.bB6Ng01-016A01.g
ACCDH850106DH850107
length8101,048
definitionDH850106|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A01, 5' end.DH850107|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgatgacttacaggctgcagtacaactcccaacaatggttag
tagcagctgtgaatggaagtccaaggatctagcagtttctcagttccaca
cagcaagcaggtgaaggagagagagagagagccttccttctcccaatatc
cttacatagtctacaacagaaggtgtagcccagattaaaggtgtggtgtg
caaccacatctttaatcccagatgaccttgaacttggagatctccctgtc
ttaatcttctggaatccatagccactatgcctcaagatctccataccaag
gtccaggtcagaaatttctatcttcctggtgagtcttccaattctggatt
gtagttcattctagatatagtcaagttaacaaccaggtcagtacaatgta
gccactacattgaccaatacagatgcagatactcacagccaaccatcaga
ctgagtacctggacccaatggaagagttagacaaaggactgaagaagctg
aggggctttgaaaccccttaggaagaacaacaatatcaaccaaccaggtc
tcccagagctcccagggactaaaccaccaaacagaaagtacacatggagg
gacccatggctccagctgcatatgtagcaaaagattgtcttgtctgacat
caatatgaggagaggtccttagtcctgtagaggcttgatgaaccagcata
gggaaattctagggcagtgaggggggtcggtgggtagctggatagttgag
ggagctatatcatagaaatagggggaagagcgtatggggtaggggcttgt
aaacgaaatc

gaattctttgagtataatctgttgataataatctcctcatttctatcaaa
agctaatttagaatatgttaaatttgatttagctagagcttaagataaaa
atgaagaaagcagaatttgaatatagaatacaaatcttattagagatcca
tttcagtttatatttttactgtaaattaattactgcaacttccattcctt
cttattttgtggtttcatactgtttaatatcatatggtattcttattgta
agaacagaacttctaaagaagatataatcagagcaaattcaatacttcaa
ttccattaaagattcactttaatcaaatcatggagatttaggaacacaac
tttacaattcaaccttcagtcaaaactttaacacagtcaatcaaggaaat
ctctctttgtaaatatctagtgttggatatgttgctactgttccagaaat
caagcaagtagacataacttttatatgctataactgttgtagtatataca
ggaactgcactagaatttcctaccattttcctgtaaatttgaggatacat
ttgattttcctttgactgaatgtaataatttgacaacacagtacagctga
aagtggaaattaagaattatcacttttatacatatacacctaaaatcttc
ctcatttgtctagatgtaaatatgttttttagaatgtgggagaataatat
tcactttacttatgttaacttctaaaactaattactacaggattaatata
agtaagtagtctgtaaaaatatatgctaaatgagattataagtgttatca
aatatttttgttctgctgaaatgtttagtttttatatttctatagcattg
agttcacattactgctaaagataactctgggtaatggcacagtacactga
ccttttggcatgcagaagtagaaccattctctaaatagagaatctaaacc
tacttagaggaaaagaacgataaatgcacacatttgaattctgcagataa
aagagtaagccaagatggaggaaggattaaagagagtgggagcaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55767020_55768067
seq2: B6Ng01-016A01.g_65_1112 (reverse)

seq1  AACCTGCT-CCACTCTTCTTTAT-CTTCCTCCATCTTTGCTTACTCTTTT  48
      ||| |||| |||||||  || || ||||||||||||| ||||||||||||
seq2  AACTTGCTCCCACTCTCTTTAATCCTTCCTCCATCTTGGCTTACTCTTTT  50

seq1  ATCTGCAGAATTCCAATGGTGTGCATTTTATCGTTCTTTTCCTCTAAGTA  98
      ||||||||||||| ||| ||||||| ||||||||||||||||||||||||
seq2  ATCTGCAGAATTCAAAT-GTGTGCA-TTTATCGTTCTTTTCCTCTAAGTA  98

seq1  GGTTTTAGATTCTCTATTTAGAGAATGGTTCTACTTCTGCATGCCAAAAG  148
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TTTAGATTCTCTATTTAGAGAATGGTTCTACTTCTGCATGCCAAAAG  147

seq1  GTCAGTGTACTGTGCCATTA-CCAGAGTTATCTTTAGCAGTAATGTGAAC  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCAGTGTACTGTGCCATTACCCAGAGTTATCTTTAGCAGTAATGTGAAC  197

seq1  TCAATGCTATAGAAATATAAAAACTAAACATTTCAGCAGAACAAAAATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTATAGAAATATAAAAACTAAACATTTCAGCAGAACAAAAATAT  247

seq1  TTGATAACACTTATAATCTCATTTAGCATATATTTTTACAGACTACTTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACACTTATAATCTCATTTAGCATATATTTTTACAGACTACTTAC  297

seq1  TTATATTAATCCTGTAGTAATTAGTTTTAGAAGTTAACATAAGTAAAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAATCCTGTAGTAATTAGTTTTAGAAGTTAACATAAGTAAAGTG  347

seq1  AATATTATTCTCCCACATTCTAAAAAACATATTTACATCTAGACAAATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTCTCCCACATTCTAAAAAACATATTTACATCTAGACAAATGA  397

seq1  GGAAGATTTTAGGTGTATATGTATAAAAGTGATAATTCTTAATTTCCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTTTAGGTGTATATGTATAAAAGTGATAATTCTTAATTTCCACT  447

seq1  TTCAGCTGTACTGTGTTGTCAAATTATTACATTCAGTCAAAGGAAAATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTACTGTGTTGTCAAATTATTACATTCAGTCAAAGGAAAATCA  497

seq1  AATGTATCCTCAAATTTACAGGAAAATGGTAGGAAATTCTAGTGCAGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCCTCAAATTTACAGGAAAATGGTAGGAAATTCTAGTGCAGTTC  547

seq1  CTGTATATACTACAACAGTTATAGCATATAAAAGTTATGTCTACTTGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATACTACAACAGTTATAGCATATAAAAGTTATGTCTACTTGCTT  597

seq1  GATTTCTGGAACAGTAGCAACATATCCAACACTAGATATTTACAAAGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGGAACAGTAGCAACATATCCAACACTAGATATTTACAAAGAGA  647

seq1  GATTTCCTTGATTGACTGTGTTAAAGTTTTGACTGAAGGTTGAATTGTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTGATTGACTGTGTTAAAGTTTTGACTGAAGGTTGAATTGTAA  697

seq1  AGTTGTGTTCCTAAATCTCCATGATTTGATTAAAGTGAATCTTTAATGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTTCCTAAATCTCCATGATTTGATTAAAGTGAATCTTTAATGGA  747

seq1  ATTGAAGTATTGAATTTGCTCTGATTATATCTTCTTTAGAAGTTCTGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTATTGAATTTGCTCTGATTATATCTTCTTTAGAAGTTCTGTTC  797

seq1  TTACAATAAGAATACCATATGATATTAAACAGTATGAAACCACAAAATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAAGAATACCATATGATATTAAACAGTATGAAACCACAAAATAA  847

seq1  GAAGGAATGGAAGTTGCAGTAATTAATTTACAGTAAAAATATAAACTGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGGAAGTTGCAGTAATTAATTTACAGTAAAAATATAAACTGAA  897

seq1  ATGGATCTCTAATAAGATTTGTATTCTATATTCAAATTCTGCTTTCTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTCTAATAAGATTTGTATTCTATATTCAAATTCTGCTTTCTTCA  947

seq1  TTTTTATCTTAAGCTCTAGCTAAATCAAATTTAACATATTCTAAATTAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCTTAAGCTCTAGCTAAATCAAATTTAACATATTCTAAATTAGC  997

seq1  TTTTGATAGAAATGAGGAGATTATTATCAACAGATTATACTCAAAGAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAGAAATGAGGAGATTATTATCAACAGATTATACTCAAAGAATT  1047

seq1  C  1048
      |
seq2  C  1048


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