BAC Information

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BAC

Clone NameB6Ng01-016F04
Chromosome5 (Build37)
Map Location 47,646,002 - 47,647,137
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016F04.bB6Ng01-016F04.g
ACCDH850318DH850319
length1,119911
definitionDH850318|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F04, 5' end.DH850319|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgctttaagttatacccttcctatttctgtttattcaatggt
aaatggagtcttcattcttgttactttactgccatttcatgaatttggga
atgaaataggcttccccaccctactcctgtaaacctccaagcttaaaatg
tcaaatactagttttctcaaatatagaactttctagagttggcagaggat
taaatgagctcatgtgtgttaagaatttaatatagcacaagctccaagct
ttggcacatgtcatcaaaataatatcacacactactccaccaccactgaa
tgccagccttttctctcaatgacttaattccatcctaaaaatacatttct
gacacagtcatgacattatcaagtgagtaacatggaacaactgacaggtg
aagcagatgcttgtagctgtggtaactagcaagtggctatatttggacat
taagctaagcatcctgatgtggagtccagtgtgctctagggagcagttat
atagatagccccttattcaaaagtacttataatcaaaatgctgactttaa
tataacactcagtatgcattagttagccctagatatcaaagaatgaaacc
ctacacacacacacacacacacacacacacacacacacacatgcatgcac
acatgcatacactcacactcacttgcacatgcacacacacacatagagtc
atgatgctaatgtatttgcattagcaaacatttccttgttgttagtttgg
gatgctccaaagataatcagtattttgatacgttcaaacttatggaaaat
ataaagaattgaaaaccacgtgtggagagcagatgaagttgtgagtaaat
acatatcgttgatgtgaacattgatgtgtcaaagatgtcaatccctcaga
ctcacaagaatagcaatggtaatgcctggtcagtatcagaggagttcagg
cattcccttggcacagtgtggatgctgacaaacagtggtctatagccaaa
attgtatgtgtaaggataccagctatgactgtcgaccatgggcttcctga
ctttcgactagagaagggccttcgagactactatctacttatttgttcag
tgtaaaaaataaattactg

gaattctttgttttctccatccatggtaattgaaagtttggctgggtata
gtagcctgggctggcatttgtgttctcttagtgtctgtataacatctgtc
caggatcttctggctttcatagtctctggtgaaaagtctagtgtaattct
aataggcttgtctttatatgttacttgacctttttttcttactgcttttt
atattctatctttatttagtgcatttgttgttctgattattatgtgtcgg
gaggaatttcttttctggtccagtctatttggagttttgtaggcttgttg
tatgttcatgagcatctctttctttaggtttgggaagttttcttctataa
ttttgttgaagatatttgctggccctttaagttaaaaatcgtcattctct
tctactcctattatctgtaggtttggtattctcattgtgtcctggatttc
ctggatgttttgagttaggatctttttgcattttccattttctttgattg
ttgtgctgatgttctctatggaatcttctgcatctgagattctctcttcc
atctcttgtattctgttgctgatgctcacatctatagttccagatttctt
tcctaagatttctatctccagcgttgcttcactttgggttttctttgttg
tgtctacttcctgttttaggtcttgtatgattttgttcaattccatcacc
gtttggttgtgttttcctgtttttctttaagtacttagaactctttagca
gtgttctcctgtatttctttaagtgagttattaaagtccttcttgatgtc
ctctactatcatcatgagatatgcttttaaatccaggtctagcttttcgg
gtatgttgtggtgtctagactggctgaggtgggattgctgtgttctgatg
atggtgattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47646002_47647137
seq2: B6Ng01-016F04.b_46_1164

seq1  GAATTCTGTGCTTTAAGTTATACCCTTCCTATTTCTGTTTATTCAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTTTAAGTTATACCCTTCCTATTTCTGTTTATTCAATGGT  50

seq1  AAATGGAGTCTTCATTCTTGTTACTTTACTGCCATTTCATGAATTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTCTTCATTCTTGTTACTTTACTGCCATTTCATGAATTTGGGA  100

seq1  ATGAAATAGGCTTCCCCACCCTACTCCTGTAAACCTCCAAGCTTAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGGCTTCCCCACCCTACTCCTGTAAACCTCCAAGCTTAAAATG  150

seq1  TCAAATACTAGTTTTCTCAAATATAGAACTTTCTAGAGTTGGCAGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTAGTTTTCTCAAATATAGAACTTTCTAGAGTTGGCAGAGGAT  200

seq1  TAAATGAGCTCATGTGTGTTAAGAATTTAATATAGCACAAGCTCCAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGCTCATGTGTGTTAAGAATTTAATATAGCACAAGCTCCAAGCT  250

seq1  TTGGCACATGTCATCAAAATAATATCACACACTACTCCACCACCACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACATGTCATCAAAATAATATCACACACTACTCCACCACCACTGAA  300

seq1  TGCCAGCCTTTTCTCTCAATGACTTAATTCCATCCTAAAAATACATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCCTTTTCTCTCAATGACTTAATTCCATCCTAAAAATACATTTCT  350

seq1  GACACAGTCATGACATTATCAAGTGAGTAACATGGAACAACTGACAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTCATGACATTATCAAGTGAGTAACATGGAACAACTGACAGGTG  400

seq1  AAGCAGATGCTTGTAGCTGTGGTAACTAGCAAGTGGCTATATTTGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGCTTGTAGCTGTGGTAACTAGCAAGTGGCTATATTTGGACAT  450

seq1  TAAGCTAAGCATCCTGATGTGGAGTCCAGTGTGCTCTAGGGAGCAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAGCATCCTGATGTGGAGTCCAGTGTGCTCTAGGGAGCAGTTAT  500

seq1  ATAGATAGCCCCTTATTCAAAAGTACTTATAATCAAAATGCTGACTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGCCCCTTATTCAAAAGTACTTATAATCAAAATGCTGACTTTAA  550

seq1  TATAACACTCAGTATGCATTAGTTAGCCCTAGATATCAAAGAATGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTCAGTATGCATTAGTTAGCCCTAGATATCAAAGAATGAAACC  600

seq1  CTACACACACACACACACACACACACACACACACACACACATGCATGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACACACACACACACACACACACACACACACACACATGCATGCAC  650

seq1  ACATGCATACACTCACACTCACTTGCACATGCACACACACACATAGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATACACTCACACTCACTTGCACATGCACACACACACATAGAGTC  700

seq1  ATGATGCTAATGTATTTGCATTAGCAAACATTTCCTTGTTGTTAGTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTAATGTATTTGCATTAGCAAACATTTCCTTGTTGTTAGTTTGG  750

seq1  GATGCTCCAAAGATAATCAGTATTTTGATACGTTCAAACTTATGGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCCAAAGATAATCAGTATTTTGATACGTTCAAACTTATGGAAAAT  800

seq1  ATAAAGAATTGAAAACCACGTGTGGAGAGCAGATGAAGTTGTGAGTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAATTGAAAACCACGTGTGGAGAGCAGATGAAGTTGTGAGTAAAT  850

seq1  ACATATCGTTGATGTGAACATTGATGTGTCAAAGATGTCAATCCCTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCGTTGATGTGAACATTGATGTGTCAAAGATGTCAATCCCTCAGA  900

seq1  CTCACAAGAATAGCAATGGTAATGCCTGGTCAGTATCAGAGGAAGTTCAG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  CTCACAAGAATAGCAATGGTAATGCCTGGTCAGTATCAGAGG-AGTTCA-  948

seq1  GGCATTCCCTTGGCACAAGTGTGGATGCTGACAAACAGTTGGTCTATAGC  1000
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GGCATTCCCTTGGCAC-AGTGTGGATGCTGACAAACAG-TGGTCTATAGC  996

seq1  CAAAATTTGTATGTGTAAAGGATACCAGCTAATGACTGTACGACCATGGG  1050
      ||||| |||||||||| ||||||||||||| |||||||| ||||||||||
seq2  CAAAA-TTGTATGTGT-AAGGATACCAGCT-ATGACTGT-CGACCATGGG  1042

seq1  CCTTCCTTGACTTTCCGACTAGAGAGGGCCCTTCAGAGACTACCTAATCT  1100
       ||||| ||||||| |||||||||| || ||||| ||||||||   ||||
seq2  -CTTCC-TGACTTT-CGACTAGAGAAGGGCCTTC-GAGACTAC--TATCT  1086

seq1  ACTTATTTGTTCAGGTTGTATAAAATAAATATACTG  1136
      ||||||||||||||  |||| ||||||||| |||||
seq2  ACTTATTTGTTCAG--TGTAAAAAATAAAT-TACTG  1119


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