BAC Information

Click to search

BAC

Clone NameB6Ng01-016P14
Chromosome5 (Build37)
Map Location 134,055,178 - 134,251,276
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039731
Downstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P14.bB6Ng01-016P14.g
ACCDH850787DH850788
length1,0321,011
definitionDH850787|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P14, 5' end.DH850788|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,055,178 - 134,056,218)(134,250,707 - 134,251,276)
sequence
gaattctactttggcttgccactgggaccttataaggaaagggtagatat
tggaaaatagatacttaggtccctgatcggccattcagcatcagaattcc
agaggtgagagctcagagatctatttttttaaaccctctggatgctaaga
ctgaatgatcctaacaggaaagcttagccctcccgcatctatttagtgca
atatggaacccctgcaccgttctcaggctatttgttttttaatgattgat
gaatcaatctagcagtaactcatatctccccaggccagtcacacctgcct
tgaagctggtattgctgctaaacaccagcccaggtgccggaatccctgga
gaggcctctcagcctgcaacctgtctgagtagcatgaccaaagccattgg
acaattcacaggagatcaagtcactggtagcctcaaggcattctgactcc
tgttgttctcagcagggcaggggctggagagcaacctgctcaccatgggg
cttctgctgccactctagaatcagccctgtgactcagaggccacaaccct
gggcttaccttgggaccaatatgtcattcactctcagaagccattacagc
agggtctgtggcagctttctctgtcttgcatgctaagtcaagggtatctg
ttccatatggtggtgaataatttacaacacaatttacttcctgcttatat
agctgattccatacaaagcttccatttgcatatttattaatttacaaaat
taatgccattttcttagtcccgtacaggatgtgtggctggtccctgtctt
tgaattaattttaatctaaggtggaaacatttgttaagggagctggctca
cgccaaagtaatcaaattcgtggtaatcaaatgctggtaggggggtgggg
ggaagagagagctactttatttagtgcctaaccatgcaggctccaggaaa
taatggtgctataatagagtctccaaaaacatcccttaatgggattattg
ggtcgtttacaataagagaatgaactcagaga
gaattcatcgtaggtaaagaatttataagcaacagtaaaattgactcttt
tggtagcacttttcaccactgattctcaatactgttagttacagaatatt
cgtatttctaaatcttctattggtttgatttctaggtgtttgtgtcagta
acttttgaggtttagtagtgtataaccatccaaatggcttgtaagaccat
gatgttactgtgtgaggctgaactttctatatagaatttaactaaagcca
cactttgcatcagatttaatgatatgtcagatataggaatacattgtctt
ccataaacccaaatattggactagagattgtggggggaataaaaaggaaa
ataatggtgtgcctctctttaagcttttgtttggaaaatatacaatgtat
ctaattgtgtgatgggactattataattgagttaataagacagatataat
ttcccccttttgaggcagtgtgccactatttattcctggatgggctagga
cttgttatgtaaaccaggctgatctggaactcacagaaatcctcttgctt
cagtttccagagtgctgagattaaaggtatgtaccaccttgcctggaagt
agacatcttaaaacatttaagtgttaatctataatgtagtgtaaagttat
agcatacatgagcaagaacttttctgagtgctcgagtttttaatttttta
aatccagcctgatggctaaaagtggttatcccagctccacagcggtgcta
agtcaggaggattacaagttcaaggccatcatgaggaagttagtgagacc
atcccaaaatataagtaaaatgaggccaagggtgtagctcagaatcagtg
tacttgcctagtatctcctcttgaaggatagggatgtagagtgcctagaa
tccttgtgagaagctagaagtatggctaacagaagttgctatctagccac
atgtgaaatcctgtatcaaccctggtacgaattttttaaaaaaagatttt
ttgattggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134055178_134056218
seq2: B6Ng01-016P14.b_45_1076

seq1  GAATTCTACTTTGGCTTGCCACTGGGACCTTATAAGGAAAGGGTAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTGGCTTGCCACTGGGACCTTATAAGGAAAGGGTAGATAT  50

seq1  TGGAAAATAGATACTTAGGTCCCTGATCGGCCATTCAGCATCAGAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATAGATACTTAGGTCCCTGATCGGCCATTCAGCATCAGAATTCC  100

seq1  AGAGGTGAGAGCTCAGAGATCTATTTTTTTAAACCCTCTGGATGCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAGCTCAGAGATCTATTTTTTTAAACCCTCTGGATGCTAAGA  150

seq1  CTGAATGATCCTAACAGGAAAGCTTAGCCCTCCCGCATCTATTTAGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGATCCTAACAGGAAAGCTTAGCCCTCCCGCATCTATTTAGTGCA  200

seq1  ATATGGAACCCCTGCACCGTTCTCAGGCTATTTGTTTTTTAATGATTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAACCCCTGCACCGTTCTCAGGCTATTTGTTTTTTAATGATTGAT  250

seq1  GAATCAATCTAGCAGTAACTCATATCTCCCCAGGCCAGTCACACCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATCTAGCAGTAACTCATATCTCCCCAGGCCAGTCACACCTGCCT  300

seq1  TGAAGCTGGTATTGCTGCTAAACACCAGCCCAGGTGCCGGAATCCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGGTATTGCTGCTAAACACCAGCCCAGGTGCCGGAATCCCTGGA  350

seq1  GAGGCCTCTCAGCCTGCAACCTGTCTGAGTAGCATGACCAAAGCCATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTCAGCCTGCAACCTGTCTGAGTAGCATGACCAAAGCCATTGG  400

seq1  ACAATTCACAGGAGATCAAGTCACTGGTAGCCTCAAGGCATTCTGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCACAGGAGATCAAGTCACTGGTAGCCTCAAGGCATTCTGACTCC  450

seq1  TGTTGTTCTCAGCAGGGCAGGGGCTGGAGAGCAACCTGCTCACCATGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTCAGCAGGGCAGGGGCTGGAGAGCAACCTGCTCACCATGGGG  500

seq1  CTTCTGCTGCCACTCTAGAATCAGCCCTGTGACTCAGAGGCCACAACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGCCACTCTAGAATCAGCCCTGTGACTCAGAGGCCACAACCCT  550

seq1  GGGCTTACCTTGGGACCAATATGTCATTCACTCTCAGAAGCCATTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTACCTTGGGACCAATATGTCATTCACTCTCAGAAGCCATTACAGC  600

seq1  AGGGTCTGTGGCAGCTTTCTCTGTCTTGCATGCTAAGTCAAGGGTATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGTGGCAGCTTTCTCTGTCTTGCATGCTAAGTCAAGGGTATCTG  650

seq1  TTCCATATGGTGGTGAATAATTTACAACACAATTTACTTCCTGCTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATGGTGGTGAATAATTTACAACACAATTTACTTCCTGCTTATAT  700

seq1  AGCTGATTCCATACAAAGCTTCCATTTGCATATTTATTAATTTACAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTCCATACAAAGCTTCCATTTGCATATTTATTAATTTACAAAAT  750

seq1  TAATGCCATTTTCTTAGTCCCGTACAGGATGTGTGGCTGGTCCCTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCATTTTCTTAGTCCCGTACAGGATGTGTGGCTGGTCCCTGTCTT  800

seq1  TGAATTAATTTTAATCTAAGGTGGAAACATTTGTTAAGGGAGCTGGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAATTTTAATCTAAGGTGGAAACATTTGTTAAGGGAGCTGGCTCA  850

seq1  GGCCAAAGTAATCAAATTCGTGGTAATCAAATGCTGGTAGGGGG--TGGG  898
       |||||||||||||||||||||||||||||||||||||||||||   |||
seq2  CGCCAAAGTAATCAAATTCGTGGTAATCAAATGCTGGTAGGGGGGTGGGG  900

seq1  GGAAGAGAGAGCTAACATTTATTGAGTGCCTAACCATGCCAGGCTCCAGG  948
      ||||||||||||||   |||||| |||||||||||||| |||||||||||
seq2  GGAAGAGAGAGCTA--CTTTATTTAGTGCCTAACCATG-CAGGCTCCAGG  947

seq1  AAAATTAATGGTGC-AGAATAGAAGTCTCCAAAAACATCCCCTTAATGTG  997
      |||  ||||||||| | ||||| ||||||||||||||| ||||||||| |
seq2  AAA--TAATGGTGCTATAATAG-AGTCTCCAAAAACAT-CCCTTAATGGG  993

seq1  ATTATTGTGGCTGTTTTACAAATAAGGAAATTGAAACTCAGAGA  1041
      |||||  ||| |  ||||| ||||||  |||   ||||||||||
seq2  ATTAT--TGGGTCGTTTAC-AATAAGAGAAT--GAACTCAGAGA  1032

seq1: chr5_134250707_134251276
seq2: B6Ng01-016P14.g_520_1080 (reverse)

seq1  TGGCCAATTCAAAATATCTTTTTTTTTAAAAAAATTCAGTACCAAGGGTT  50
      ||||||| |||||| ||||||||||   ||||||||| ||||| ||||||
seq2  TGGCCAA-TCAAAAAATCTTTTTTT---AAAAAATTC-GTACC-AGGGTT  44

seq1  GAATACAGGATTTCACATGT-GCTAGATAAGCAATCTACTGTTAGCCATA  99
      | |||||||||||||||||| ||||||| ||||| || ||||||||||||
seq2  G-ATACAGGATTTCACATGTGGCTAGAT-AGCAA-CTTCTGTTAGCCATA  91

seq1  CTTCTAGCCTCTCACAAGGAATTCTAGGCACTCTACATCCCTATCCTTCA  149
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCTAGCTTCTCACAAGG-ATTCTAGGCACTCTACATCCCTATCCTTCA  140

seq1  AGAGGAGATTCTAGGCAAGTACACTGATTCTGAGCTACACCCTTGGCCTT  199
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  AGAGGAGATACTAGGCAAGTACACTGATTCTGAGCTACACCCTTGGCC-T  189

seq1  CATTTTACTTATATTTTGGGATGGTCTCACTAACTTCCTCATGATGGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACTTATATTTTGGGATGGTCTCACTAACTTCCTCATGATGGCCT  239

seq1  TGAACTTGTAATCCTCCTGACTTAGC-CCGCTGTGGAGCTGGGATAACCA  298
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAACTTGTAATCCTCCTGACTTAGCACCGCTGTGGAGCTGGGATAACCA  289

seq1  CTTTTAGCCATCAGGCTGGATTTAAAAAATTAAAAACTCGAGCACTCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCCATCAGGCTGGATTTAAAAAATTAAAAACTCGAGCACTCAGA  339

seq1  AAAGTTCTTGCTCATGTATGCTATAACTTTACACTACATTATAGATTAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTGCTCATGTATGCTATAACTTTACACTACATTATAGATTAAC  389

seq1  ACTTAAATGTTTTAAGATGTCTACTTCCAGGCAAGGTGGTACATACCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATGTTTTAAGATGTCTACTTCCAGGCAAGGTGGTACATACCTTT  439

seq1  AATCTCAGCACTCTGGAAACTGAAGCAAGAGGATTTCTGTGAGTTCCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCACTCTGGAAACTGAAGCAAGAGGATTTCTGTGAGTTCCAGA  489

seq1  TCAGCCTGGTTTACATAACAAGTCCTAGCCCATCCAGGAATAAATAGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGGTTTACATAACAAGTCCTAGCCCATCCAGGAATAAATAGTGG  539

seq1  CACACTGCCTCAAAAGGGGGAA  570
      ||||||||||||||||||||||
seq2  CACACTGCCTCAAAAGGGGGAA  561